1IMPA

Colicin e9 immunity protein im9, nmr, 21 structures
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
86
structure length
86
Chain Sequence
MELKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords IM9
publication title Three-dimensional solution structure and 13C nuclear magnetic resonance assignments of the colicin E9 immunity protein Im9.
pubmed doi rcsb
molecule tags Bacteriocin
total genus 21
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 1996-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1impA00
1FR2A 2K5XA 2GZIA 2VLOA 4F37A 2GZGA 3U43A 2GYKA 2JAZA 1IMPA 2GZFA 1MZ8A 1BXIA 1IMQA 1ZNVA 2JBGA 2GZEA 2JB0A 1GXHA 2VLQA 1GXGA 2K0DX 3GKLC 4UHPB 2WPTA 7CEIA 2VLPA 1AYIA 3GJNA 1CEIA 2VLNA 1EMVA 2NO8A 1UNKA 2ERHA 1E0HA 2GZJA 4QKOA 1UJZA 5EW5E
chains in the Genus database with same CATH superfamily
3I56P 2PEJA 2LIWA 2GZIA 1NQ4A 4U0AA 4COPA 1QVFO 4IZ6A 5CZDB 3LRYA 3DS3A 3G6EP 2OTJP 2BUOA 5DCKA 3DS4A 3CC2P 3CD6P 3HYBA 1DV5A 1M6EX 1QVGO 2LTEA 4QKOA 1UJZA 3EJBA 4PWVB 1M74A 1BXIA 1X3OA 2KGAA 2MY5A 3CCEP 3CCLP 3G29A 2L0QA 2QNWA 3G21A 2FVEA 2GDXA 4NEOA 3CCQP 3CXCO 1A43A 3CMAP 2KG8A 2GZFA 1IUQA 2PNGA 4MRTC 1JJ2O 2KW2A 3OW2O 1RO0A 1VQLP 2K92A 5JPAA 5EJDA 2AVAA 2VLNA 4H2YC 1E0HA 5HGLA 3H0DA 5BS1A 2XXMA 5KP7B 3NTEA 3G0VA 2GYKA 4DG9A 3I55P 3G26A 1QRJA 4U0DA 3CCVP 1HQBA 3DS0A 4COCA 1YJ9P 2GDYA 2KOPA 4U0FA 4GR2A 3GZLA 2XZ1C 1EIAA 1YITP 2CWOA 2PEKA 2MR8A 3CC7P 1IMQA 4BPGA 1VQ5P 1YJNP 2VSQA 7CEIA 4IPYA 2PEIA 4XFYA 1CEIA 2L22A 2PY8A 3GZMA 2FACA 3EJDA 1KC8Q 1IMPA 2LPKA 3RG6C 1VHNA 3H4EA 2M5RA 1AF8A 2AFEA 2L4BA 1Q82Q 5F2NA 1EMVA 3DPHA 4XFXA 2KOOA 1Q81Q 2EHSA 2N6ZA 4H2WC 1W2BO 4XROA 2KG6A 3EJEA 2CG5B 1DNYA 3CCRP 4PXHB 5HGNA 4R0MA 5F2KA 3G1GA 2EG5A 3M1MA 2PEOA 4PH1A 5HGMA 3MGEA 1K30A 1KD1Q 3U43A 1K9MQ 1Z6MA 2JBGA 3E2DA 3DS2A 1GXGA 2K0DX 3GKLC 1AUMA 2EFJA 2KWLA 1YJWP 2JO0A 2L6EA 2Z45A 1YHQP 2BHVA 2MF4A 3VRLC 4PH0A 2M8PA 2MVVA 2JU1A 2N6YA 1OR5A 2VLOA 5I4TG 4BPHA 1VQ8P 2XT1A 2KR5A 2JYGA 1T8KA 1M6NA 1VQOP 2QA4P 2XV6A 1K73Q 1D1DA 1KLPA 3DS5A 4QNBA 2FVAA 1M90Q 1VQ9P 4BPFA 2LOLA 1VQMP 3DS1A 1RO2A 1Q7YQ 1BAJA 3H47A 2XZ0D 2PENA 2AF8A 3CC4P 1A8OA 1K8AQ 2M8LA 4F37A 2K5XA 2MVUA 1L0IA 2N98A 1F80D 2MR7A 2GDWA 2EHTA 2LF4A 2LKIA 3CCSP 1VQKP 3G4SP 3CE7A 2ERHA 1EOQA 2EIAA 3CPWO 2KODA 5EW5E 1FR2A 1RNIA 1ZMBA 3Q20A 2KGEA 3G28A 5KP6B 3DTJA 4M0IA 2Z44A 4U0CA 3WBHA 2DGYA 5HV8A 2KOSA 5KP8B 2K0YA 1GPJA 3P05A 2PEQA 1ACPA 1NJIQ 2K2QA 2MD9A 2K0XA 1VQNP 3CMEP 1ZNVA 1YIJP 2AFDA 2FADA 2P9XA 3GJNA 1VQPP 1VQ4P 2NO8A 5BS2A 2N5IA 2DNWA 2M8NA 1E6JP 1YI2P 5F2OA 1KQSO 1M1KQ 2OTLP 2KGDA 2X2BA 3G71P 1HY8A 1N8RQ 2KG9A 2VLQA 1VKUA 4UHPB 2WPTA 3CCJP 2KGCA 3CCUP 2QEXP 2Z46A 3B5IA 2OARA 3HZQA 2JQ4A 2FQ0A 3G1IA 4WYMA 2N50A 2CQ8A 4GR6A 2ONTA 2LIUA 2K93A 2GZGA 2L9FA 2JGPA 5HVCA 4XRQA 5HGOA 2CGQA 4XFZA 2GZEA 2JB0A 3RG2A 2ROQA 1GXHA 2JYLA 1VQ6P 4U0BA 2CNRA 3LMOA 2FQ1A 2LL8A 1L0HA 4U0EA 1VQ7P 3B4QA 2GZJA 4HKGA 2FVFA 1S72P 2PEMA 3CCMP 2E1MA 3NY7B 2FAEA 2JAZA 1MZ8A 2K94A 2N5HA 2LMLA 4CA3A 2KORA 2JU2A 2FHSC 2FQ2A 2VLPA 1AYIA 4H2XC 1UNKA 1Q86Q 2KOQA
chains in the Genus database with same CATH topology
1FR2A 2K5XA 2GZIA 2VLOA 4F37A 2GZGA 3U43A 2GYKA 2JAZA 1IMPA 2GZFA 1MZ8A 1BXIA 1IMQA 1ZNVA 2JBGA 2GZEA 2JB0A 1GXHA 2VLQA 1GXGA 2K0DX 3GKLC 4UHPB 2WPTA 7CEIA 2VLPA 1AYIA 3GJNA 1CEIA 2VLNA 1EMVA 2NO8A 1UNKA 2ERHA 1E0HA 2GZJA 4QKOA 1UJZA 5EW5E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FR2 A;  2K5X A;  2GZI A;  2VLO A;  4F37 A;  2GZG A;  3U43 A;  2GYK A;  2JAZ A;  1IMP A;  2GZF A;  1MZ8 A;  1BXI A;  1IMQ A;  1ZNV A;  2JBG A;  2GZE A;  2JB0 A;  1GXH A;  2VLQ A;  1GXG A;  2K0D X;  3GKL C;  4UHP B;  2WPT A;  7CEI A;  2VLP A;  1AYI A;  3GJN A;  1CEI A;  2VLN A;  1EMV A;  2NO8 A;  1UNK A;  2ERH A;  1E0H A;  2GZJ A;  4QKO A;  1UJZ A;  5EW5 E; 
#chains in the Genus database with same CATH topology
 3I56 P;  2PEJ A;  2LIW A;  2GZI A;  1NQ4 A;  4U0A A;  4COP A;  1QVF O;  4IZ6 A;  5CZD B;  3LRY A;  3DS3 A;  3G6E P;  2OTJ P;  2BUO A;  5DCK A;  3DS4 A;  3CC2 P;  3CD6 P;  3HYB A;  1DV5 A;  1M6E X;  1QVG O;  2LTE A;  4QKO A;  1UJZ A;  3EJB A;  4PWV B;  1M74 A;  1BXI A;  1X3O A;  2KGA A;  2MY5 A;  3CCE P;  3CCL P;  3G29 A;  2L0Q A;  2QNW A;  3G21 A;  2FVE A;  2GDX A;  4NEO A;  3CCQ P;  3CXC O;  1A43 A;  3CMA P;  2KG8 A;  2GZF A;  1IUQ A;  2PNG A;  4MRT C;  1JJ2 O;  2KW2 A;  3OW2 O;  1RO0 A;  1VQL P;  2K92 A;  5JPA A;  5EJD A;  2AVA A;  2VLN A;  4H2Y C;  1E0H A;  5HGL A;  3H0D A;  5BS1 A;  2XXM A;  5KP7 B;  3NTE A;  3G0V A;  2GYK A;  4DG9 A;  3I55 P;  3G26 A;  1QRJ A;  4U0D A;  3CCV P;  1HQB A;  3DS0 A;  4COC A;  1YJ9 P;  2GDY A;  2KOP A;  4U0F A;  4GR2 A;  3GZL A;  2XZ1 C;  1EIA A;  1YIT P;  2CWO A;  2PEK A;  2MR8 A;  3CC7 P;  1IMQ A;  4BPG A;  1VQ5 P;  1YJN P;  2VSQ A;  7CEI A;  4IPY A;  2PEI A;  4XFY A;  1CEI A;  2L22 A;  2PY8 A;  3GZM A;  2FAC A;  3EJD A;  1KC8 Q;  1IMP A;  2LPK A;  3RG6 C;  1VHN A;  3H4E A;  2M5R A;  1AF8 A;  2AFE A;  2L4B A;  1Q82 Q;  5F2N A;  1EMV A;  3DPH A;  4XFX A;  2KOO A;  1Q81 Q;  2EHS A;  2N6Z A;  4H2W C;  1W2B O;  4XRO A;  2KG6 A;  3EJE A;  2CG5 B;  1DNY A;  3CCR P;  4PXH B;  5HGN A;  4R0M A;  5F2K A;  3G1G A;  2EG5 A;  3M1M A;  2PEO A;  4PH1 A;  5HGM A;  3MGE A;  1K30 A;  1KD1 Q;  3U43 A;  1K9M Q;  1Z6M A;  2JBG A;  3E2D A;  3DS2 A;  1GXG A;  2K0D X;  3GKL C;  1AUM A;  2EFJ A;  2KWL A;  1YJW P;  2JO0 A;  2L6E A;  2Z45 A;  1YHQ P;  2BHV A;  2MF4 A;  3VRL C;  4PH0 A;  2M8P A;  2MVV A;  2JU1 A;  2N6Y A;  1OR5 A;  2VLO A;  5I4T G;  4BPH A;  1VQ8 P;  2XT1 A;  2KR5 A;  2JYG A;  1T8K A;  1M6N A;  1VQO P;  2QA4 P;  2XV6 A;  1K73 Q;  1D1D A;  1KLP A;  3DS5 A;  4QNB A;  2FVA A;  1M90 Q;  1VQ9 P;  4BPF A;  2LOL A;  1VQM P;  3DS1 A;  1RO2 A;  1Q7Y Q;  1BAJ A;  3H47 A;  2XZ0 D;  2PEN A;  2AF8 A;  3CC4 P;  1A8O A;  1K8A Q;  2M8L A;  4F37 A;  2K5X A;  2MVU A;  1L0I A;  2N98 A;  1F80 D;  2MR7 A;  2GDW A;  2EHT A;  2LF4 A;  2LKI A;  3CCS P;  1VQK P;  3G4S P;  3CE7 A;  2ERH A;  1EOQ A;  2EIA A;  3CPW O;  2KOD A;  5EW5 E;  1FR2 A;  1RNI A;  1ZMB A;  3Q20 A;  2KGE A;  3G28 A;  5KP6 B;  3DTJ A;  4M0I A;  2Z44 A;  4U0C A;  3WBH A;  2DGY A;  5HV8 A;  2KOS A;  5KP8 B;  2K0Y A;  1GPJ A;  3P05 A;  2PEQ A;  1ACP A;  1NJI Q;  2K2Q A;  2MD9 A;  2K0X A;  1VQN P;  3CME P;  1ZNV A;  1YIJ P;  2AFD A;  2FAD A;  2P9X A;  3GJN A;  1VQP P;  1VQ4 P;  2NO8 A;  5BS2 A;  2N5I A;  2DNW A;  2M8N A;  1E6J P;  1YI2 P;  5F2O A;  1KQS O;  1M1K Q;  2OTL P;  2KGD A;  2X2B A;  3G71 P;  1HY8 A;  1N8R Q;  2KG9 A;  2VLQ A;  1VKU A;  4UHP B;  2WPT A;  3CCJ P;  2KGC A;  3CCU P;  2QEX P;  2Z46 A;  3B5I A;  2OAR A;  3HZQ A;  2JQ4 A;  2FQ0 A;  3G1I A;  4WYM A;  2N50 A;  2CQ8 A;  4GR6 A;  2ONT A;  2LIU A;  2K93 A;  2GZG A;  2L9F A;  2JGP A;  5HVC A;  4XRQ A;  5HGO A;  2CGQ A;  4XFZ A;  2GZE A;  2JB0 A;  3RG2 A;  2ROQ A;  1GXH A;  2JYL A;  1VQ6 P;  4U0B A;  2CNR A;  3LMO A;  2FQ1 A;  2LL8 A;  1L0H A;  4U0E A;  1VQ7 P;  3B4Q A;  2GZJ A;  4HKG A;  2FVF A;  1S72 P;  2PEM A;  3CCM P;  2E1M A;  3NY7 B;  2FAE A;  2JAZ A;  1MZ8 A;  2K94 A;  2N5H A;  2LML A;  4CA3 A;  2KOR A;  2JU2 A;  2FHS C;  2FQ2 A;  2VLP A;  1AYI A;  4H2X C;  1UNK A;  1Q86 Q;  2KOQ A; 
#chains in the Genus database with same CATH homology
 1FR2 A;  2K5X A;  2GZI A;  2VLO A;  4F37 A;  2GZG A;  3U43 A;  2GYK A;  2JAZ A;  1IMP A;  2GZF A;  1MZ8 A;  1BXI A;  1IMQ A;  1ZNV A;  2JBG A;  2GZE A;  2JB0 A;  1GXH A;  2VLQ A;  1GXG A;  2K0D X;  3GKL C;  4UHP B;  2WPT A;  7CEI A;  2VLP A;  1AYI A;  3GJN A;  1CEI A;  2VLN A;  1EMV A;  2NO8 A;  1UNK A;  2ERH A;  1E0H A;  2GZJ A;  4QKO A;  1UJZ A;  5EW5 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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