4M0IA

Crystal structure of synthetic hiv-1 capsid c-terminal domain (ctd) c198s mutant
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
71
structure length
71
Chain Sequence
SILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDSKTILKALGPGATLEEMMTACQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords HIV-1 CAPSID PROTEIN
publication title Molecular basis of disulfide bonding-regulated HIV-1 capsid assembly
rcsb
total genus 24
structure length 71
sequence length 71
ec nomenclature
pdb deposition date 2013-08-01
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 4m0iA00
4XRQA 3DS2A 3DS3A 3P05A 2XV6A 2EIAA 3H4EA 3NTEA 3G21A 5DCKA 1QRJA 4U0CA 3G1GA 1D1DA 3MGEA 2BUOA 3G1IA 2M8NA 3DS4A 2XXMA 4U0DA 3DS1A 3G29A 4XFXA 4XROA 4COPA 4U0BA 2L6EA 3LRYA 1EOQA 3G0VA 4U0FA 5JPAA 4COCA 2KODA 3DPHA 3DTJA 3G28A 1E6JP 4XFYA 1AUMA 2XT1A 4M0IA 2ONTA 3G26A 3DS5A 4QNBA 4U0EA 5HGLA 5HGMA 3VRLC 1BAJA 3H47A 4PH1A 5I4TG 5HGOA 4U0AA 2M8LA 4XFZA 2JYGA 2LF4A 4WYMA 1A43A 2JO0A 1A8OA 2M8PA 2JYLA 5HGNA 4PH0A 3DS0A 1EIAA 4IPYA
chains in the Genus database with same CATH superfamily
3G1GA 3CC2P 2GDYA 2L22A 1YJWP 1VHNA 2KG6A 3B5IA 1MZ8A 2PEOA 3G28A 1Q86Q 2K93A 2JBGA 2LMLA 1BAJA 5BS2A 3I56P 5HV8A 2XV6A 2ERHA 3G1IA 2LIWA 2X2BA 2EG5A 1F80D 2LPKA 2KGCA 2ONTA 1L0HA 2MVUA 5EJDA 4U0AA 1VQOP 3CMAP 3CCVP 1K9MQ 1OR5A 3DS4A 2N50A 1NJIQ 1M74A 1ZNVA 1EOQA 1VQKP 2VLOA 3B4QA 1EMVA 1E6JP 4U0EA 2ROQA 5HGMA 1JJ2O 4GR2A 2Z44A 2MD9A 5KP7B 2K0YA 1AYIA 2N6ZA 3DS0A 3E2DA 2KR5A 4U0DA 3DS1A 2FACA 2L6EA 1Q7YQ 2VLNA 2FQ1A 2PEIA 3CC7P 2JAZA 4PXHB 3DTJA 2JB0A 1GXGA 2N5IA 1QVGO 1VQ6P 1N8RQ 3CCQP 3WBHA 3EJBA 2LL8A 3M1MA 1M90Q 5HGNA 3CCSP 4BPHA 4XRQA 2FVEA 1RNIA 2FVAA 3MGEA 4UHPB 2EHTA 1YJ9P 2JGPA 1M6EX 2Z46A 2OARA 1Z6MA 2KGEA 1HQBA 3G0VA 5F2KA 1KLPA 1YJNP 2K94A 4COCA 3CCJP 2PEJA 2P9XA 1HY8A 2KOSA 2KGAA 2WPTA 2EHSA 1E0HA 1VQ4P 5KP6B 2AVAA 1VQMP 4U0CA 1NQ4A 2PEMA 1QVFO 2OTLP 2GZFA 1YI2P 1BXIA 2PEQA 3Q20A 3GKLC 4BPFA 4M0IA 2GYKA 3G71P 4XFZA 2OTJP 1GPJA 2QEXP 1M6NA 1Q82Q 2EIAA 2PNGA 1DNYA 3CE7A 3CPWO 3CCMP 1VQ8P 1IMQA 1S72P 2M8NA 4U0BA 2CWOA 2FHSC 2QNWA 2KOQA 2PY8A 3G26A 4H2YC 3GZMA 1RO0A 2LF4A 3CCLP 1T8KA 2JO0A 1UJZA 5DCKA 2BUOA 3I55P 2L9FA 3G29A 1VQ9P 3NY7B 2EFJA 2KODA 2GDXA 2MY5A 2LTEA 4QNBA 2CNRA 1YIJP 3CCEP 3EJDA 1YITP 1VKUA 2L0QA 1AF8A 1A8OA 1UNKA 3H0DA 3DS3A 5EW5E 2KOOA 4R0MA 1IMPA 1VQPP 2MR8A 1VQNP 3U43A 2LOLA 1D1DA 1AUMA 3DS5A 1DV5A 4MRTC 2KORA 2JU1A 3HYBA 4PH1A 2QA4P 1A43A 2AF8A 2K5XA 2DNWA 2MF4A 2E1MA 2N5HA 2K0XA 2XXMA 5JPAA 1VQ5P 1VQ7P 3DPHA 5F2OA 2GDWA 1KQSO 2LKIA 2GZJA 2JYLA 5KP8B 2NO8A 4F37A 1L0IA 2XZ1C 3LMOA 4H2XC 4XFXA 1K30A 1W2BO 3G6EP 2GZEA 5HGOA 2AFEA 2Z45A 3H4EA 1FR2A 2KG8A 2K0DX 1M1KQ 4GR6A 2PEKA 2K2QA 3RG6C 2VLQA 1KD1Q 5F2NA 2PENA 3P05A 3CCUP 3CCRP 3GJNA 1K8AQ 4NEOA 4U0FA 3RG2A 2DGYA 4XFYA 2VLPA 1GXHA 2KOPA 2CG5B 2JU2A 7CEIA 2FQ2A 5CZDB 3NTEA 2CQ8A 3G21A 1RO2A 4QKOA 1ZMBA 3CD6P 1Q81Q 1CEIA 5HVCA 2KW2A 2XT1A 2XZ0D 2N6YA 3CMEP 4WYMA 2KWLA 4HKGA 4IZ6A 1EIAA 4BPGA 4IPYA 2AFDA 1QRJA 3G4SP 2KG9A 2K92A 2MVVA 2MR7A 2FVFA 4XROA 3LRYA 4PWVB 3OW2O 3VRLC 1IUQA 3H47A 5I4TG 2FADA 2M8LA 2JYGA 2M8PA 2L4BA 2BHVA 1K73Q 3DS2A 2N98A 3HZQA 4H2WC 1YHQP 1ACPA 4COPA 1X3OA 2VSQA 2KGDA 1KC8Q 1VQLP 2FAEA 2GZGA 2LIUA 5BS1A 3CC4P 4CA3A 5HGLA 4DG9A 2JQ4A 2FQ0A 3GZLA 2M5RA 4PH0A 2CGQA 3EJEA 2GZIA 3CXCO
chains in the Genus database with same CATH topology
4XRQA 3P05A 3DS3A 1RNIA 3CCUP 3G1GA 3CCRP 3MGEA 1K8AQ 3CC2P 1YJ9P 1M6EX 2Z46A 1VQPP 2OARA 1VQNP 3G0VA 5F2KA 4U0FA 1YJWP 3B5IA 2DGYA 1YJNP 2PEOA 3G28A 4XFYA 1AUMA 4COCA 1Q86Q 1D1DA 3DS5A 3CCJP 2PEJA 1BAJA 2P9XA 4PH1A 3HYBA 5BS2A 2QA4P 1A43A 3I56P 1VQ4P 2E1MA 2XV6A 3NTEA 3G21A 1VQMP 1RO2A 4U0CA 3G1IA 2PEMA 1ZMBA 2XXMA 1QVFO 3CD6P 2EG5A 1Q81Q 2OTLP 5JPAA 1YI2P 2PEQA 3Q20A 1VQ5P 3DPHA 1VQ7P 4M0IA 2XT1A 5F2OA 2ONTA 1KQSO 3G71P 4U0AA 4XFZA 1VQOP 2OTJP 3CMEP 4WYMA 2JYLA 3CMAP 3CCVP 1EIAA 4IPYA 2QEXP 1M6NA 1Q82Q 2EIAA 1K9MQ 1QRJA 3G4SP 3CCMP 3CPWO 1VQ8P 1S72P 2M8NA 3DS4A 1NJIQ 4XFXA 1K30A 1M74A 4U0BA 4XROA 3LRYA 1W2BO 1EOQA 2CWOA 1VQKP 3G6EP 3OW2O 2PY8A 1E6JP 4U0EA 5HGMA 3G26A 3VRLC 1JJ2O 4GR2A 2Z44A 1IUQA 1RO0A 3H47A 5I4TG 5HGOA 2M8LA 2JYGA 2LF4A 3CCLP 2JO0A 2M8PA 3DS0A 3E2DA 2BHVA 1K73Q 3DS2A 5DCKA 2Z45A 3H4EA 3HZQA 2BUOA 3I55P 1YHQP 4U0DA 3DS1A 3G29A 4COPA 2L6EA 1Q7YQ 1KC8Q 1VQ9P 2PEIA 1VQLP 3CC7P 2EFJA 2KODA 3DTJA 5BS1A 1M1KQ 3CC4P 4GR6A 4QNBA 1QVGO 1VQ6P 1YIJP 5HGLA 2PEKA 3RG6C 3CCEP 1YITP 1KD1Q 1N8RQ 3CCQP 3WBHA 3M1MA 5F2NA 1M90Q 1A8OA 5HGNA 4PH0A 2PENA 3CCSP 3H0DA 3CXCO
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XRQ A;  3DS2 A;  3DS3 A;  3P05 A;  2XV6 A;  2EIA A;  3H4E A;  3NTE A;  3G21 A;  5DCK A;  1QRJ A;  4U0C A;  3G1G A;  1D1D A;  3MGE A;  2BUO A;  3G1I A;  2M8N A;  3DS4 A;  2XXM A;  4U0D A;  3DS1 A;  3G29 A;  4XFX A;  4XRO A;  4COP A;  4U0B A;  2L6E A;  3LRY A;  1EOQ A;  3G0V A;  4U0F A;  5JPA A;  4COC A;  2KOD A;  3DPH A;  3DTJ A;  3G28 A;  1E6J P;  4XFY A;  1AUM A;  2XT1 A;  4M0I A;  2ONT A;  3G26 A;  3DS5 A;  4QNB A;  4U0E A;  5HGL A;  5HGM A;  3VRL C;  1BAJ A;  3H47 A;  4PH1 A;  5I4T G;  5HGO A;  4U0A A;  2M8L A;  4XFZ A;  2JYG A;  2LF4 A;  4WYM A;  1A43 A;  2JO0 A;  1A8O A;  2M8P A;  2JYL A;  5HGN A;  4PH0 A;  3DS0 A;  1EIA A;  4IPY A; 
#chains in the Genus database with same CATH topology
 3G1G A;  3CC2 P;  2GDY A;  2L22 A;  1YJW P;  1VHN A;  2KG6 A;  3B5I A;  1MZ8 A;  2PEO A;  3G28 A;  1Q86 Q;  2K93 A;  2JBG A;  2LML A;  1BAJ A;  5BS2 A;  3I56 P;  5HV8 A;  2XV6 A;  2ERH A;  3G1I A;  2LIW A;  2X2B A;  2EG5 A;  1F80 D;  2LPK A;  2KGC A;  2ONT A;  1L0H A;  2MVU A;  5EJD A;  4U0A A;  1VQO P;  3CMA P;  3CCV P;  1K9M Q;  1OR5 A;  3DS4 A;  2N50 A;  1NJI Q;  1M74 A;  1ZNV A;  1EOQ A;  1VQK P;  2VLO A;  3B4Q A;  1EMV A;  1E6J P;  4U0E A;  2ROQ A;  5HGM A;  1JJ2 O;  4GR2 A;  2Z44 A;  2MD9 A;  5KP7 B;  2K0Y A;  1AYI A;  2N6Z A;  3DS0 A;  3E2D A;  2KR5 A;  4U0D A;  3DS1 A;  2FAC A;  2L6E A;  1Q7Y Q;  2VLN A;  2FQ1 A;  2PEI A;  3CC7 P;  2JAZ A;  4PXH B;  3DTJ A;  2JB0 A;  1GXG A;  2N5I A;  1QVG O;  1VQ6 P;  1N8R Q;  3CCQ P;  3WBH A;  3EJB A;  2LL8 A;  3M1M A;  1M90 Q;  5HGN A;  3CCS P;  4BPH A;  4XRQ A;  2FVE A;  1RNI A;  2FVA A;  3MGE A;  4UHP B;  2EHT A;  1YJ9 P;  2JGP A;  1M6E X;  2Z46 A;  2OAR A;  1Z6M A;  2KGE A;  1HQB A;  3G0V A;  5F2K A;  1KLP A;  1YJN P;  2K94 A;  4COC A;  3CCJ P;  2PEJ A;  2P9X A;  1HY8 A;  2KOS A;  2KGA A;  2WPT A;  2EHS A;  1E0H A;  1VQ4 P;  5KP6 B;  2AVA A;  1VQM P;  4U0C A;  1NQ4 A;  2PEM A;  1QVF O;  2OTL P;  2GZF A;  1YI2 P;  1BXI A;  2PEQ A;  3Q20 A;  3GKL C;  4BPF A;  4M0I A;  2GYK A;  3G71 P;  4XFZ A;  2OTJ P;  1GPJ A;  2QEX P;  1M6N A;  1Q82 Q;  2EIA A;  2PNG A;  1DNY A;  3CE7 A;  3CPW O;  3CCM P;  1VQ8 P;  1IMQ A;  1S72 P;  2M8N A;  4U0B A;  2CWO A;  2FHS C;  2QNW A;  2KOQ A;  2PY8 A;  3G26 A;  4H2Y C;  3GZM A;  1RO0 A;  2LF4 A;  3CCL P;  1T8K A;  2JO0 A;  1UJZ A;  5DCK A;  2BUO A;  3I55 P;  2L9F A;  3G29 A;  1VQ9 P;  3NY7 B;  2EFJ A;  2KOD A;  2GDX A;  2MY5 A;  2LTE A;  4QNB A;  2CNR A;  1YIJ P;  3CCE P;  3EJD A;  1YIT P;  1VKU A;  2L0Q A;  1AF8 A;  1A8O A;  1UNK A;  3H0D A;  3DS3 A;  5EW5 E;  2KOO A;  4R0M A;  1IMP A;  1VQP P;  2MR8 A;  1VQN P;  3U43 A;  2LOL A;  1D1D A;  1AUM A;  3DS5 A;  1DV5 A;  4MRT C;  2KOR A;  2JU1 A;  3HYB A;  4PH1 A;  2QA4 P;  1A43 A;  2AF8 A;  2K5X A;  2DNW A;  2MF4 A;  2E1M A;  2N5H A;  2K0X A;  2XXM A;  5JPA A;  1VQ5 P;  1VQ7 P;  3DPH A;  5F2O A;  2GDW A;  1KQS O;  2LKI A;  2GZJ A;  2JYL A;  5KP8 B;  2NO8 A;  4F37 A;  1L0I A;  2XZ1 C;  3LMO A;  4H2X C;  4XFX A;  1K30 A;  1W2B O;  3G6E P;  2GZE A;  5HGO A;  2AFE A;  2Z45 A;  3H4E A;  1FR2 A;  2KG8 A;  2K0D X;  1M1K Q;  4GR6 A;  2PEK A;  2K2Q A;  3RG6 C;  2VLQ A;  1KD1 Q;  5F2N A;  2PEN A;  3P05 A;  3CCU P;  3CCR P;  3GJN A;  1K8A Q;  4NEO A;  4U0F A;  3RG2 A;  2DGY A;  4XFY A;  2VLP A;  1GXH A;  2KOP A;  2CG5 B;  2JU2 A;  7CEI A;  2FQ2 A;  5CZD B;  3NTE A;  2CQ8 A;  3G21 A;  1RO2 A;  4QKO A;  1ZMB A;  3CD6 P;  1Q81 Q;  1CEI A;  5HVC A;  2KW2 A;  2XT1 A;  2XZ0 D;  2N6Y A;  3CME P;  4WYM A;  2KWL A;  4HKG A;  4IZ6 A;  1EIA A;  4BPG A;  4IPY A;  2AFD A;  1QRJ A;  3G4S P;  2KG9 A;  2K92 A;  2MVV A;  2MR7 A;  2FVF A;  4XRO A;  3LRY A;  4PWV B;  3OW2 O;  3VRL C;  1IUQ A;  3H47 A;  5I4T G;  2FAD A;  2M8L A;  2JYG A;  2M8P A;  2L4B A;  2BHV A;  1K73 Q;  3DS2 A;  2N98 A;  3HZQ A;  4H2W C;  1YHQ P;  1ACP A;  4COP A;  1X3O A;  2VSQ A;  2KGD A;  1KC8 Q;  1VQL P;  2FAE A;  2GZG A;  2LIU A;  5BS1 A;  3CC4 P;  4CA3 A;  5HGL A;  4DG9 A;  2JQ4 A;  2FQ0 A;  3GZL A;  2M5R A;  4PH0 A;  2CGQ A;  3EJE A;  2GZI A;  3CXC O; 
#chains in the Genus database with same CATH homology
 4XRQ A;  3P05 A;  3DS3 A;  1RNI A;  3CCU P;  3G1G A;  3CCR P;  3MGE A;  1K8A Q;  3CC2 P;  1YJ9 P;  1M6E X;  2Z46 A;  1VQP P;  2OAR A;  1VQN P;  3G0V A;  5F2K A;  4U0F A;  1YJW P;  3B5I A;  2DGY A;  1YJN P;  2PEO A;  3G28 A;  4XFY A;  1AUM A;  4COC A;  1Q86 Q;  1D1D A;  3DS5 A;  3CCJ P;  2PEJ A;  1BAJ A;  2P9X A;  4PH1 A;  3HYB A;  5BS2 A;  2QA4 P;  1A43 A;  3I56 P;  1VQ4 P;  2E1M A;  2XV6 A;  3NTE A;  3G21 A;  1VQM P;  1RO2 A;  4U0C A;  3G1I A;  2PEM A;  1ZMB A;  2XXM A;  1QVF O;  3CD6 P;  2EG5 A;  1Q81 Q;  2OTL P;  5JPA A;  1YI2 P;  2PEQ A;  3Q20 A;  1VQ5 P;  3DPH A;  1VQ7 P;  4M0I A;  2XT1 A;  5F2O A;  2ONT A;  1KQS O;  3G71 P;  4U0A A;  4XFZ A;  1VQO P;  2OTJ P;  3CME P;  4WYM A;  2JYL A;  3CMA P;  3CCV P;  1EIA A;  4IPY A;  2QEX P;  1M6N A;  1Q82 Q;  2EIA A;  1K9M Q;  1QRJ A;  3G4S P;  3CCM P;  3CPW O;  1VQ8 P;  1S72 P;  2M8N A;  3DS4 A;  1NJI Q;  4XFX A;  1K30 A;  1M74 A;  4U0B A;  4XRO A;  3LRY A;  1W2B O;  1EOQ A;  2CWO A;  1VQK P;  3G6E P;  3OW2 O;  2PY8 A;  1E6J P;  4U0E A;  5HGM A;  3G26 A;  3VRL C;  1JJ2 O;  4GR2 A;  2Z44 A;  1IUQ A;  1RO0 A;  3H47 A;  5I4T G;  5HGO A;  2M8L A;  2JYG A;  2LF4 A;  3CCL P;  2JO0 A;  2M8P A;  3DS0 A;  3E2D A;  2BHV A;  1K73 Q;  3DS2 A;  5DCK A;  2Z45 A;  3H4E A;  3HZQ A;  2BUO A;  3I55 P;  1YHQ P;  4U0D A;  3DS1 A;  3G29 A;  4COP A;  2L6E A;  1Q7Y Q;  1KC8 Q;  1VQ9 P;  2PEI A;  1VQL P;  3CC7 P;  2EFJ A;  2KOD A;  3DTJ A;  5BS1 A;  1M1K Q;  3CC4 P;  4GR6 A;  4QNB A;  1QVG O;  1VQ6 P;  1YIJ P;  5HGL A;  2PEK A;  3RG6 C;  3CCE P;  1YIT P;  1KD1 Q;  1N8R Q;  3CCQ P;  3WBH A;  3M1M A;  5F2N A;  1M90 Q;  1A8O A;  5HGN A;  4PH0 A;  2PEN A;  3CCS P;  3H0D A;  3CXC O; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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