2JBGA

Crystal structure of the mutant n560a of the nuclease domain of cole7 in complex with im7
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
86
structure length
86
Chain Sequence
MELKNSISDYTEAEFVQLLKEIEKENVAATDDVLDVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKPGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/inhibitor
molecule keywords COLICIN-E7 IMMUNITY PROTEIN
publication title The Conserved Asparagine in the Hnh Motif Serves an Important Structural Role in Metal Finger Endonucleases.
pubmed doi rcsb
source organism Escherichia coli
total genus 28
structure length 86
sequence length 86
chains with identical sequence C
ec nomenclature ec 3.1.-.-:
pdb deposition date 2006-12-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2jbgA00
1IMPA 4UHPB 1ZNVA 2VLQA 2JB0A 3U43A 2GZGA 4QKOA 2GZFA 2VLPA 2K5XA 1UJZA 1EMVA 3GJNA 2VLNA 1UNKA 1E0HA 2VLOA 1GXGA 1MZ8A 2ERHA 2GZJA 1BXIA 2GZEA 2JAZA 1GXHA 1CEIA 2JBGA 2K0DX 2WPTA 3GKLC 1AYIA 4F37A 7CEIA 1FR2A 2GYKA 2NO8A 5EW5E 1IMQA 2GZIA
chains in the Genus database with same CATH superfamily
2GZFA 2FAEA 2VLPA 2AFDA 2K5XA 2N5IA 3CCSP 5BS2A 2ERHA 2JU2A 2GZEA 4GR2A 3NY7B 2GDYA 3G1IA 2Z46A 3G29A 2GYKA 1VQ4P 2N6YA 3G21A 1IMQA 2K94A 2JYLA 5F2KA 1RO2A 4GR6A 3H47A 2XT1A 2K0XA 4WYMA 3CD6P 4XROA 3MGEA 1AUMA 2GZJA 2FQ2A 1YJWP 1VQLP 2M8NA 4NEOA 4F37A 1VKUA 4H2YC 3G1GA 2AVAA 2KGCA 1AF8A 2KODA 1YHQP 2QEXP 1E0HA 2LF4A 1Q7YQ 1S72P 2M5RA 1DNYA 2EIAA 2KW2A 1VQMP 3CMEP 1OR5A 1K9MQ 4IPYA 4COPA 2GZIA 3DS5A 3HYBA 3DS2A 2JYGA 2EFJA 3VRLC 2Z45A 3LRYA 2CWOA 1ZMBA 1VQPP 1YJ9P 3GZMA 2KGEA 3M1MA 2PEOA 2PEKA 2GDXA 7CEIA 3G0VA 3G28A 4M0IA 2ONTA 2L0QA 3CCEP 3B5IA 3G4SP 3DS1A 5I4TG 2AF8A 5F2OA 5HVCA 3CXCO 3DTJA 1K73Q 3HZQA 2PEJA 2AFEA 2CNRA 1D1DA 2DGYA 2LIWA 3H0DA 5DCKA 2FQ1A 1MZ8A 2EHTA 1YI2P 2PEQA 5HGNA 3CCJP 2M8LA 2LTEA 2NO8A 1KD1Q 1VQ9P 3I55P 1QRJA 3G26A 3CC7P 2JQ4A 1ZNVA 2KGAA 4XRQA 2GDWA 1VQ6P 2LOLA 4U0DA 2L22A 4MRTC 1K30A 1VHNA 2QNWA 2JO0A 3RG6C 2EHSA 2K0DX 4H2WC 5EW5E 2L9FA 5KP6B 2PNGA 5BS1A 2JU1A 2KG6A 3CC4P 2MVVA 2BHVA 2OTJP 4HKGA 2LIUA 2ROQA 2FACA 4PXHB 5CZDB 3CCLP 3G6EP 4XFYA 2KORA 1BAJA 2LL8A 4UHPB 2CGQA 4CA3A 1GPJA 2N6ZA 5KP8B 2MY5A 1VQKP 1VQ5P 3CC2P 1EIAA 1NQ4A 1HQBA 1T8KA 5HGMA 4PH1A 2EG5A 2FVAA 3NTEA 4IZ6A 2K92A 1Z6MA 4U0CA 3G71P 2GZGA 2DNWA 2FVEA 2LKIA 4COCA 3B4QA 2OTLP 2FHSC 2VLNA 1UNKA 2VLOA 4U0AA 2M8PA 3EJDA 2CQ8A 1GXHA 4BPFA 3RG2A 3CCQP 1AYIA 5KP7B 1FR2A 3CE7A 3DS0A 3CCUP 1A43A 2BUOA 3CPWO 1L0IA 2MF4A 3CCVP 1K8AQ 2VSQA 1VQNP 1EOQA 1UJZA 2KOPA 5HGOA 1YITP 2KR5A 3LMOA 2MR8A 1KC8Q 1M1KQ 2N50A 2JAZA 1QVFO 2JGPA 2K0YA 2XV6A 3OW2O 3GKLC 2FADA 2KOOA 2Z44A 5F2NA 1YIJP 1VQOP 2K93A 1KQSO 2PEIA 5HGLA 4DG9A 4U0BA 4PH0A 1GXGA 3E2DA 3DS4A 1BXIA 1E6JP 2FVFA 4XFZA 2PEMA 1W2BO 2L6EA 2N5HA 1M6EX 2KOQA 1Q86Q 4QKOA 2N98A 2E1MA 2X2BA 2PENA 3GJNA 1M6NA 1M74A 3H4EA 2KWLA 1N8RQ 2LMLA 3DPHA 3DS3A 2KG8A 2XZ0D 4BPGA 1IMPA 4R0MA 4U0EA 3GZLA 1YJNP 1EMVA 3CMAP 2XXMA 2OARA 1RNIA 1X3OA 3I56P 2KOSA 2PY8A 5HV8A 3EJBA 4U0FA 1M90Q 2WPTA 2MD9A 2KG9A 1KLPA 1VQ7P 2QA4P 2KGDA 4H2XC 5EJDA 3CCRP 3CCMP 3Q20A 1L0HA 1A8OA 1QVGO 3EJEA 1IUQA 5JPAA 1Q81Q 2LPKA 2MR7A 1CEIA 1HY8A 1Q82Q 2L4BA 2MVUA 1JJ2O 1VQ8P 2XZ1C 2VLQA 2JB0A 3U43A 4PWVB 2FQ0A 1ACPA 1RO0A 3P05A 1F80D 3WBHA 2P9XA 2JBGA 2CG5B 4BPHA 1DV5A 4XFXA 4QNBA 1NJIQ 2K2QA
chains in the Genus database with same CATH topology
1IMPA 4UHPB 1ZNVA 2VLQA 2JB0A 3U43A 2GZGA 4QKOA 2GZFA 2VLPA 2K5XA 1UJZA 1EMVA 3GJNA 2VLNA 1UNKA 1E0HA 2VLOA 1GXGA 1MZ8A 2ERHA 2GZJA 1BXIA 2GZEA 2JAZA 1GXHA 1CEIA 2JBGA 2K0DX 2WPTA 3GKLC 1AYIA 4F37A 7CEIA 1FR2A 2GYKA 2NO8A 5EW5E 1IMQA 2GZIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IMP A;  4UHP B;  1ZNV A;  2VLQ A;  2JB0 A;  3U43 A;  2GZG A;  4QKO A;  2GZF A;  2VLP A;  2K5X A;  1UJZ A;  1EMV A;  3GJN A;  2VLN A;  1UNK A;  1E0H A;  2VLO A;  1GXG A;  1MZ8 A;  2ERH A;  2GZJ A;  1BXI A;  2GZE A;  2JAZ A;  1GXH A;  1CEI A;  2JBG A;  2K0D X;  2WPT A;  3GKL C;  1AYI A;  4F37 A;  7CEI A;  1FR2 A;  2GYK A;  2NO8 A;  5EW5 E;  1IMQ A;  2GZI A; 
#chains in the Genus database with same CATH topology
 2GZF A;  2FAE A;  2VLP A;  2AFD A;  2K5X A;  2N5I A;  3CCS P;  5BS2 A;  2ERH A;  2JU2 A;  2GZE A;  4GR2 A;  3NY7 B;  2GDY A;  3G1I A;  2Z46 A;  3G29 A;  2GYK A;  1VQ4 P;  2N6Y A;  3G21 A;  1IMQ A;  2K94 A;  2JYL A;  5F2K A;  1RO2 A;  4GR6 A;  3H47 A;  2XT1 A;  2K0X A;  4WYM A;  3CD6 P;  4XRO A;  3MGE A;  1AUM A;  2GZJ A;  2FQ2 A;  1YJW P;  1VQL P;  2M8N A;  4NEO A;  4F37 A;  1VKU A;  4H2Y C;  3G1G A;  2AVA A;  2KGC A;  1AF8 A;  2KOD A;  1YHQ P;  2QEX P;  1E0H A;  2LF4 A;  1Q7Y Q;  1S72 P;  2M5R A;  1DNY A;  2EIA A;  2KW2 A;  1VQM P;  3CME P;  1OR5 A;  1K9M Q;  4IPY A;  4COP A;  2GZI A;  3DS5 A;  3HYB A;  3DS2 A;  2JYG A;  2EFJ A;  3VRL C;  2Z45 A;  3LRY A;  2CWO A;  1ZMB A;  1VQP P;  1YJ9 P;  3GZM A;  2KGE A;  3M1M A;  2PEO A;  2PEK A;  2GDX A;  7CEI A;  3G0V A;  3G28 A;  4M0I A;  2ONT A;  2L0Q A;  3CCE P;  3B5I A;  3G4S P;  3DS1 A;  5I4T G;  2AF8 A;  5F2O A;  5HVC A;  3CXC O;  3DTJ A;  1K73 Q;  3HZQ A;  2PEJ A;  2AFE A;  2CNR A;  1D1D A;  2DGY A;  2LIW A;  3H0D A;  5DCK A;  2FQ1 A;  1MZ8 A;  2EHT A;  1YI2 P;  2PEQ A;  5HGN A;  3CCJ P;  2M8L A;  2LTE A;  2NO8 A;  1KD1 Q;  1VQ9 P;  3I55 P;  1QRJ A;  3G26 A;  3CC7 P;  2JQ4 A;  1ZNV A;  2KGA A;  4XRQ A;  2GDW A;  1VQ6 P;  2LOL A;  4U0D A;  2L22 A;  4MRT C;  1K30 A;  1VHN A;  2QNW A;  2JO0 A;  3RG6 C;  2EHS A;  2K0D X;  4H2W C;  5EW5 E;  2L9F A;  5KP6 B;  2PNG A;  5BS1 A;  2JU1 A;  2KG6 A;  3CC4 P;  2MVV A;  2BHV A;  2OTJ P;  4HKG A;  2LIU A;  2ROQ A;  2FAC A;  4PXH B;  5CZD B;  3CCL P;  3G6E P;  4XFY A;  2KOR A;  1BAJ A;  2LL8 A;  4UHP B;  2CGQ A;  4CA3 A;  1GPJ A;  2N6Z A;  5KP8 B;  2MY5 A;  1VQK P;  1VQ5 P;  3CC2 P;  1EIA A;  1NQ4 A;  1HQB A;  1T8K A;  5HGM A;  4PH1 A;  2EG5 A;  2FVA A;  3NTE A;  4IZ6 A;  2K92 A;  1Z6M A;  4U0C A;  3G71 P;  2GZG A;  2DNW A;  2FVE A;  2LKI A;  4COC A;  3B4Q A;  2OTL P;  2FHS C;  2VLN A;  1UNK A;  2VLO A;  4U0A A;  2M8P A;  3EJD A;  2CQ8 A;  1GXH A;  4BPF A;  3RG2 A;  3CCQ P;  1AYI A;  5KP7 B;  1FR2 A;  3CE7 A;  3DS0 A;  3CCU P;  1A43 A;  2BUO A;  3CPW O;  1L0I A;  2MF4 A;  3CCV P;  1K8A Q;  2VSQ A;  1VQN P;  1EOQ A;  1UJZ A;  2KOP A;  5HGO A;  1YIT P;  2KR5 A;  3LMO A;  2MR8 A;  1KC8 Q;  1M1K Q;  2N50 A;  2JAZ A;  1QVF O;  2JGP A;  2K0Y A;  2XV6 A;  3OW2 O;  3GKL C;  2FAD A;  2KOO A;  2Z44 A;  5F2N A;  1YIJ P;  1VQO P;  2K93 A;  1KQS O;  2PEI A;  5HGL A;  4DG9 A;  4U0B A;  4PH0 A;  1GXG A;  3E2D A;  3DS4 A;  1BXI A;  1E6J P;  2FVF A;  4XFZ A;  2PEM A;  1W2B O;  2L6E A;  2N5H A;  1M6E X;  2KOQ A;  1Q86 Q;  4QKO A;  2N98 A;  2E1M A;  2X2B A;  2PEN A;  3GJN A;  1M6N A;  1M74 A;  3H4E A;  2KWL A;  1N8R Q;  2LML A;  3DPH A;  3DS3 A;  2KG8 A;  2XZ0 D;  4BPG A;  1IMP A;  4R0M A;  4U0E A;  3GZL A;  1YJN P;  1EMV A;  3CMA P;  2XXM A;  2OAR A;  1RNI A;  1X3O A;  3I56 P;  2KOS A;  2PY8 A;  5HV8 A;  3EJB A;  4U0F A;  1M90 Q;  2WPT A;  2MD9 A;  2KG9 A;  1KLP A;  1VQ7 P;  2QA4 P;  2KGD A;  4H2X C;  5EJD A;  3CCR P;  3CCM P;  3Q20 A;  1L0H A;  1A8O A;  1QVG O;  3EJE A;  1IUQ A;  5JPA A;  1Q81 Q;  2LPK A;  2MR7 A;  1CEI A;  1HY8 A;  1Q82 Q;  2L4B A;  2MVU A;  1JJ2 O;  1VQ8 P;  2XZ1 C;  2VLQ A;  2JB0 A;  3U43 A;  4PWV B;  2FQ0 A;  1ACP A;  1RO0 A;  3P05 A;  1F80 D;  3WBH A;  2P9X A;  2JBG A;  2CG5 B;  4BPH A;  1DV5 A;  4XFX A;  4QNB A;  1NJI Q;  2K2Q A; 
#chains in the Genus database with same CATH homology
 1IMP A;  4UHP B;  1ZNV A;  2VLQ A;  2JB0 A;  3U43 A;  2GZG A;  4QKO A;  2GZF A;  2VLP A;  2K5X A;  1UJZ A;  1EMV A;  3GJN A;  2VLN A;  1UNK A;  1E0H A;  2VLO A;  1GXG A;  1MZ8 A;  2ERH A;  2GZJ A;  1BXI A;  2GZE A;  2JAZ A;  1GXH A;  1CEI A;  2JBG A;  2K0D X;  2WPT A;  3GKL C;  1AYI A;  4F37 A;  7CEI A;  1FR2 A;  2GYK A;  2NO8 A;  5EW5 E;  1IMQ A;  2GZI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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