4H2YC

Crystal structure of engineered bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with carrier protein from agrobacterium tumefaciens and atp
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
77
structure length
77
Chain Sequence
HMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVKLI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords Amino acid--[acyl-carrier-protein] ligase 1
publication title Adaptation of aminoacyl-tRNA synthetase catalytic core to carrier protein aminoacylation.
pubmed doi rcsb
source organism Bradyrhizobium japonicum
total genus 21
structure length 77
sequence length 77
chains with identical sequence D
ec nomenclature
pdb deposition date 2012-09-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 4h2yC00
2FAEA 2X2BA 2FACA 2JU1A 4BPHA 1DNYA 2MD9A 2KORA 1F80D 2AFEA 1OR5A 5CZDB 1NQ4A 2AVAA 2KWLA 5HVCA 2MR7A 2N50A 2K0YA 4CA3A 2L0QA 2MF4A 2DNWA 1L0IA 2M5RA 3LMOA 4MRTC 4H2XC 5HV8A 2KGDA 2FQ1A 3GZLA 2MY5A 2KOSA 3NY7B 2LOLA 1VKUA 1L0HA 2FVAA 2AFDA 2KR5A 2LMLA 2GDYA 2FQ0A 2FQ2A 2PNGA 2L9FA 2N6YA 2EHSA 2MVUA 2LKIA 2K92A 4NEOA 2KGAA 4PXHB 5KP8B 2KW2A 2K94A 1ACPA 2KOQA 2FADA 2QNWA 4R0MA 2N6ZA 2GDXA 3EJBA 2L22A 2K2QA 5EJDA 2GDWA 1T8KA 1X3OA 2K93A 4IZ6A 5KP7B 2FVFA 2N5IA 2KG8A 1HY8A 2MVVA 2LL8A 2KG6A 2CGQA 3GZMA 2EHTA 5KP6B 1KLPA 2ROQA 4HKGA 2LIWA 2N5HA 2AF8A 2KGEA 2KOPA 2JGPA 2CNRA 4PWVB 2KGCA 1DV5A 4BPGA 3RG2A 2LPKA 2LTEA 2KG9A 3CE7A 3EJDA 3EJEA 2CQ8A 2JU2A 2XZ1C 4DG9A 2FVEA 2XZ0D 2K0XA 2CG5B 2VSQA 4BPFA 4H2YC 2JQ4A 2L4BA 2N98A 2FHSC 2KOOA 2LIUA 1AF8A 4H2WC 2MR8A 1HQBA
chains in the Genus database with same CATH superfamily
1ZMBA 3LRYA 2PEMA 2JYGA 2KWLA 2VLNA 3G1GA 2PEJA 2WPTA 3Q20A 5HGMA 2K0YA 2MF4A 1CEIA 1L0IA 2M5RA 2DGYA 4U0FA 5I4TG 2ERHA 3CCVP 3NY7B 1EOQA 2LF4A 2LOLA 2AFDA 2KR5A 2LMLA 3CMEP 3G21A 3CC7P 4COPA 5F2KA 2GDYA 1VQMP 2GZGA 3U43A 2KGAA 3CXCO 4PXHB 3B4QA 2KOQA 2PEOA 3GJNA 2CWOA 2XV6A 1KQSO 2K93A 2NO8A 2QEXP 4GR6A 5KP7B 1YJ9P 3M1MA 2N5IA 1UNKA 1HY8A 2KG8A 2KG6A 1MZ8A 1DV5A 2LTEA 2KG9A 4WYMA 3EJDA 2JU2A 2XZ1C 1M74A 2GZJA 2L4BA 2FHSC 3CC2P 4H2WC 2MR8A 1HQBA 3GZMA 2GZFA 2M8NA 3CCUP 1YITP 4BPHA 1VQKP 2MD9A 2JB0A 4U0BA 3MGEA 2AFEA 1AUMA 1OR5A 2Z44A 5EW5E 5CZDB 5HGLA 3H47A 3CMAP 5HGOA 5JPAA 1EIAA 2XXMA 1VQLP 2DNWA 3LMOA 4H2XC 1YIJP 2PY8A 2KGDA 1VQ6P 1Z6MA 2MY5A 2KOSA 1L0HA 1GXGA 1Q81Q 3CC4P 1FR2A 1GPJA 2N6YA 3HZQA 2LKIA 1AYIA 4NEOA 2QA4P 1YJNP 4R0MA 2N6ZA 2GDXA 3EJBA 3CPWO 1QVFO 2K2QA 2GDWA 1T8KA 2BUOA 5DCKA 1IUQA 3CCJP 2FVFA 3NTEA 3P05A 2Z46A 2MVVA 1K9MQ 1D1DA 5KP6B 2JYLA 2CGQA 1BXIA 1QRJA 4XRQA 2LIWA 2KGEA 2M8LA 2JGPA 4PWVB 4BPGA 2LPKA 2PEIA 3CCLP 3EJEA 4U0AA 2XZ0D 2OTLP 1K30A 1N8RQ 2VSQA 4U0CA 5BS1A 1Q86Q 2FAEA 2X2BA 2JU1A 2KORA 4F37A 3I56P 3DPHA 1F80D 2M8PA 3DS0A 1M90Q 2EFJA 1ZNVA 1JJ2O 3G29A 2MR7A 2JO0A 3H4EA 4IPYA 4CA3A 2E1MA 4PH1A 5F2OA 1M1KQ 3CCSP 5HV8A 4QNBA 3HYBA 2FQ1A 3G0VA 3GZLA 4U0EA 3I55P 3G6EP 3DS5A 1YJWP 1VQ4P 1VKUA 2FVAA 1A43A 2JAZA 1VQ9P 2GYKA 2FQ0A 2FQ2A 2PNGA 3G26A 2MVUA 2K92A 3RG6C 2XT1A 3H0DA 4GR2A 5KP8B 2KW2A 1ACPA 3OW2O 2FADA 1VQ7P 2QNWA 2EG5A 2VLQA 1QVGO 2JBGA 2L22A 5F2NA 5EJDA 1X3OA 4PH0A 1KC8Q 1KD1Q 2ONTA 2LL8A 1A8OA 2ROQA 1YI2P 2N5HA 2AF8A 2CNRA 2KGCA 3RG2A 1E0HA 2CQ8A 1W2BO 4DG9A 1IMPA 2FVEA 2OARA 1UJZA 3DS2A 2CG5B 4H2YC 2JQ4A 1Q82Q 2N98A 2VLOA 2LIUA 1K8AQ 1M6NA 3CCQP 4XROA 1VHNA 2FACA 1DNYA 3DS3A 4XFZA 2GZIA 1VQ5P 3GKLC 4M0IA 1NQ4A 2AVAA 5HVCA 3CD6P 1BAJA 2N50A 2K0DX 2VLPA 4COCA 3G4SP 2L0QA 3CCEP 3DTJA 2OTJP 4MRTC 4QKOA 1GXHA 3G71P 3DS1A 4XFXA 1VQNP 1E6JP 3WBHA 2PEQA 2PENA 2L9FA 7CEIA 1YHQP 2EHSA 4XFYA 2P9XA 1EMVA 2K94A 3DS4A 3CCRP 1RO0A 1RNIA 2K5XA 4UHPB 1IMQA 1S72P 4IZ6A 3G28A 2KODA 2GZEA 1Q7YQ 5BS2A 1KLPA 2EHTA 1M6EX 4HKGA 1NJIQ 2KOPA 3CE7A 2Z45A 3VRLC 1VQPP 5HGNA 1VQ8P 3G1IA 1VQOP 2EIAA 3B5IA 2BHVA 2K0XA 2L6EA 4BPFA 1K73Q 4U0DA 3CCMP 1RO2A 2KOOA 2PEKA 1AF8A 3E2DA
chains in the Genus database with same CATH topology
2FAEA 2X2BA 2FACA 2JU1A 4BPHA 1DNYA 2MD9A 2KORA 1F80D 2AFEA 1OR5A 5CZDB 1NQ4A 2AVAA 2KWLA 5HVCA 2MR7A 2N50A 2K0YA 4CA3A 2L0QA 2MF4A 2DNWA 1L0IA 2M5RA 3LMOA 4MRTC 4H2XC 5HV8A 2KGDA 2FQ1A 3GZLA 2MY5A 2KOSA 3NY7B 2LOLA 1VKUA 1L0HA 2FVAA 2AFDA 2KR5A 2LMLA 2GDYA 2FQ0A 2FQ2A 2PNGA 2L9FA 2N6YA 2EHSA 2MVUA 2LKIA 2K92A 4NEOA 2KGAA 4PXHB 5KP8B 2KW2A 2K94A 1ACPA 2KOQA 2FADA 2QNWA 4R0MA 2N6ZA 2GDXA 3EJBA 2L22A 2K2QA 5EJDA 2GDWA 1T8KA 1X3OA 2K93A 4IZ6A 5KP7B 2FVFA 2N5IA 2KG8A 1HY8A 2MVVA 2LL8A 2KG6A 2CGQA 3GZMA 2EHTA 5KP6B 1KLPA 2ROQA 4HKGA 2LIWA 2N5HA 2AF8A 2KGEA 2KOPA 2JGPA 2CNRA 4PWVB 2KGCA 1DV5A 4BPGA 3RG2A 2LPKA 2LTEA 2KG9A 3CE7A 3EJDA 3EJEA 2CQ8A 2JU2A 2XZ1C 4DG9A 2FVEA 2XZ0D 2K0XA 2CG5B 2VSQA 4BPFA 4H2YC 2JQ4A 2L4BA 2N98A 2FHSC 2KOOA 2LIUA 1AF8A 4H2WC 2MR8A 1HQBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FAE A;  2X2B A;  2FAC A;  2JU1 A;  4BPH A;  1DNY A;  2MD9 A;  2KOR A;  1F80 D;  2AFE A;  1OR5 A;  5CZD B;  1NQ4 A;  2AVA A;  2KWL A;  5HVC A;  2MR7 A;  2N50 A;  2K0Y A;  4CA3 A;  2L0Q A;  2MF4 A;  2DNW A;  1L0I A;  2M5R A;  3LMO A;  4MRT C;  4H2X C;  5HV8 A;  2KGD A;  2FQ1 A;  3GZL A;  2MY5 A;  2KOS A;  3NY7 B;  2LOL A;  1VKU A;  1L0H A;  2FVA A;  2AFD A;  2KR5 A;  2LML A;  2GDY A;  2FQ0 A;  2FQ2 A;  2PNG A;  2L9F A;  2N6Y A;  2EHS A;  2MVU A;  2LKI A;  2K92 A;  4NEO A;  2KGA A;  4PXH B;  5KP8 B;  2KW2 A;  2K94 A;  1ACP A;  2KOQ A;  2FAD A;  2QNW A;  4R0M A;  2N6Z A;  2GDX A;  3EJB A;  2L22 A;  2K2Q A;  5EJD A;  2GDW A;  1T8K A;  1X3O A;  2K93 A;  4IZ6 A;  5KP7 B;  2FVF A;  2N5I A;  2KG8 A;  1HY8 A;  2MVV A;  2LL8 A;  2KG6 A;  2CGQ A;  3GZM A;  2EHT A;  5KP6 B;  1KLP A;  2ROQ A;  4HKG A;  2LIW A;  2N5H A;  2AF8 A;  2KGE A;  2KOP A;  2JGP A;  2CNR A;  4PWV B;  2KGC A;  1DV5 A;  4BPG A;  3RG2 A;  2LPK A;  2LTE A;  2KG9 A;  3CE7 A;  3EJD A;  3EJE A;  2CQ8 A;  2JU2 A;  2XZ1 C;  4DG9 A;  2FVE A;  2XZ0 D;  2K0X A;  2CG5 B;  2VSQ A;  4BPF A;  4H2Y C;  2JQ4 A;  2L4B A;  2N98 A;  2FHS C;  2KOO A;  2LIU A;  1AF8 A;  4H2W C;  2MR8 A;  1HQB A; 
#chains in the Genus database with same CATH topology
 1ZMB A;  3LRY A;  2PEM A;  2JYG A;  2KWL A;  2VLN A;  3G1G A;  2PEJ A;  2WPT A;  3Q20 A;  5HGM A;  2K0Y A;  2MF4 A;  1CEI A;  1L0I A;  2M5R A;  2DGY A;  4U0F A;  5I4T G;  2ERH A;  3CCV P;  3NY7 B;  1EOQ A;  2LF4 A;  2LOL A;  2AFD A;  2KR5 A;  2LML A;  3CME P;  3G21 A;  3CC7 P;  4COP A;  5F2K A;  2GDY A;  1VQM P;  2GZG A;  3U43 A;  2KGA A;  3CXC O;  4PXH B;  3B4Q A;  2KOQ A;  2PEO A;  3GJN A;  2CWO A;  2XV6 A;  1KQS O;  2K93 A;  2NO8 A;  2QEX P;  4GR6 A;  5KP7 B;  1YJ9 P;  3M1M A;  2N5I A;  1UNK A;  1HY8 A;  2KG8 A;  2KG6 A;  1MZ8 A;  1DV5 A;  2LTE A;  2KG9 A;  4WYM A;  3EJD A;  2JU2 A;  2XZ1 C;  1M74 A;  2GZJ A;  2L4B A;  2FHS C;  3CC2 P;  4H2W C;  2MR8 A;  1HQB A;  3GZM A;  2GZF A;  2M8N A;  3CCU P;  1YIT P;  4BPH A;  1VQK P;  2MD9 A;  2JB0 A;  4U0B A;  3MGE A;  2AFE A;  1AUM A;  1OR5 A;  2Z44 A;  5EW5 E;  5CZD B;  5HGL A;  3H47 A;  3CMA P;  5HGO A;  5JPA A;  1EIA A;  2XXM A;  1VQL P;  2DNW A;  3LMO A;  4H2X C;  1YIJ P;  2PY8 A;  2KGD A;  1VQ6 P;  1Z6M A;  2MY5 A;  2KOS A;  1L0H A;  1GXG A;  1Q81 Q;  3CC4 P;  1FR2 A;  1GPJ A;  2N6Y A;  3HZQ A;  2LKI A;  1AYI A;  4NEO A;  2QA4 P;  1YJN P;  4R0M A;  2N6Z A;  2GDX A;  3EJB A;  3CPW O;  1QVF O;  2K2Q A;  2GDW A;  1T8K A;  2BUO A;  5DCK A;  1IUQ A;  3CCJ P;  2FVF A;  3NTE A;  3P05 A;  2Z46 A;  2MVV A;  1K9M Q;  1D1D A;  5KP6 B;  2JYL A;  2CGQ A;  1BXI A;  1QRJ A;  4XRQ A;  2LIW A;  2KGE A;  2M8L A;  2JGP A;  4PWV B;  4BPG A;  2LPK A;  2PEI A;  3CCL P;  3EJE A;  4U0A A;  2XZ0 D;  2OTL P;  1K30 A;  1N8R Q;  2VSQ A;  4U0C A;  5BS1 A;  1Q86 Q;  2FAE A;  2X2B A;  2JU1 A;  2KOR A;  4F37 A;  3I56 P;  3DPH A;  1F80 D;  2M8P A;  3DS0 A;  1M90 Q;  2EFJ A;  1ZNV A;  1JJ2 O;  3G29 A;  2MR7 A;  2JO0 A;  3H4E A;  4IPY A;  4CA3 A;  2E1M A;  4PH1 A;  5F2O A;  1M1K Q;  3CCS P;  5HV8 A;  4QNB A;  3HYB A;  2FQ1 A;  3G0V A;  3GZL A;  4U0E A;  3I55 P;  3G6E P;  3DS5 A;  1YJW P;  1VQ4 P;  1VKU A;  2FVA A;  1A43 A;  2JAZ A;  1VQ9 P;  2GYK A;  2FQ0 A;  2FQ2 A;  2PNG A;  3G26 A;  2MVU A;  2K92 A;  3RG6 C;  2XT1 A;  3H0D A;  4GR2 A;  5KP8 B;  2KW2 A;  1ACP A;  3OW2 O;  2FAD A;  1VQ7 P;  2QNW A;  2EG5 A;  2VLQ A;  1QVG O;  2JBG A;  2L22 A;  5F2N A;  5EJD A;  1X3O A;  4PH0 A;  1KC8 Q;  1KD1 Q;  2ONT A;  2LL8 A;  1A8O A;  2ROQ A;  1YI2 P;  2N5H A;  2AF8 A;  2CNR A;  2KGC A;  3RG2 A;  1E0H A;  2CQ8 A;  1W2B O;  4DG9 A;  1IMP A;  2FVE A;  2OAR A;  1UJZ A;  3DS2 A;  2CG5 B;  4H2Y C;  2JQ4 A;  1Q82 Q;  2N98 A;  2VLO A;  2LIU A;  1K8A Q;  1M6N A;  3CCQ P;  4XRO A;  1VHN A;  2FAC A;  1DNY A;  3DS3 A;  4XFZ A;  2GZI A;  1VQ5 P;  3GKL C;  4M0I A;  1NQ4 A;  2AVA A;  5HVC A;  3CD6 P;  1BAJ A;  2N50 A;  2K0D X;  2VLP A;  4COC A;  3G4S P;  2L0Q A;  3CCE P;  3DTJ A;  2OTJ P;  4MRT C;  4QKO A;  1GXH A;  3G71 P;  3DS1 A;  4XFX A;  1VQN P;  1E6J P;  3WBH A;  2PEQ A;  2PEN A;  2L9F A;  7CEI A;  1YHQ P;  2EHS A;  4XFY A;  2P9X A;  1EMV A;  2K94 A;  3DS4 A;  3CCR P;  1RO0 A;  1RNI A;  2K5X A;  4UHP B;  1IMQ A;  1S72 P;  4IZ6 A;  3G28 A;  2KOD A;  2GZE A;  1Q7Y Q;  5BS2 A;  1KLP A;  2EHT A;  1M6E X;  4HKG A;  1NJI Q;  2KOP A;  3CE7 A;  2Z45 A;  3VRL C;  1VQP P;  5HGN A;  1VQ8 P;  3G1I A;  1VQO P;  2EIA A;  3B5I A;  2BHV A;  2K0X A;  2L6E A;  4BPF A;  1K73 Q;  4U0D A;  3CCM P;  1RO2 A;  2KOO A;  2PEK A;  1AF8 A;  3E2D A; 
#chains in the Genus database with same CATH homology
 2FAE A;  2X2B A;  2FAC A;  2JU1 A;  4BPH A;  1DNY A;  2MD9 A;  2KOR A;  1F80 D;  2AFE A;  1OR5 A;  5CZD B;  1NQ4 A;  2AVA A;  2KWL A;  5HVC A;  2MR7 A;  2N50 A;  2K0Y A;  4CA3 A;  2L0Q A;  2MF4 A;  2DNW A;  1L0I A;  2M5R A;  3LMO A;  4MRT C;  4H2X C;  5HV8 A;  2KGD A;  2FQ1 A;  3GZL A;  2MY5 A;  2KOS A;  3NY7 B;  2LOL A;  1VKU A;  1L0H A;  2FVA A;  2AFD A;  2KR5 A;  2LML A;  2GDY A;  2FQ0 A;  2FQ2 A;  2PNG A;  2L9F A;  2N6Y A;  2EHS A;  2MVU A;  2LKI A;  2K92 A;  4NEO A;  2KGA A;  4PXH B;  5KP8 B;  2KW2 A;  2K94 A;  1ACP A;  2KOQ A;  2FAD A;  2QNW A;  4R0M A;  2N6Z A;  2GDX A;  3EJB A;  2L22 A;  2K2Q A;  5EJD A;  2GDW A;  1T8K A;  1X3O A;  2K93 A;  4IZ6 A;  5KP7 B;  2FVF A;  2N5I A;  2KG8 A;  1HY8 A;  2MVV A;  2LL8 A;  2KG6 A;  2CGQ A;  3GZM A;  2EHT A;  5KP6 B;  1KLP A;  2ROQ A;  4HKG A;  2LIW A;  2N5H A;  2AF8 A;  2KGE A;  2KOP A;  2JGP A;  2CNR A;  4PWV B;  2KGC A;  1DV5 A;  4BPG A;  3RG2 A;  2LPK A;  2LTE A;  2KG9 A;  3CE7 A;  3EJD A;  3EJE A;  2CQ8 A;  2JU2 A;  2XZ1 C;  4DG9 A;  2FVE A;  2XZ0 D;  2K0X A;  2CG5 B;  2VSQ A;  4BPF A;  4H2Y C;  2JQ4 A;  2L4B A;  2N98 A;  2FHS C;  2KOO A;  2LIU A;  1AF8 A;  4H2W C;  2MR8 A;  1HQB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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