2PENA

Crystal structure of rbcx, crystal form i
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
110
structure length
110
Chain Sequence
b'EFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and Function of RbcX, an Assembly Chaperone for Hexadecameric Rubisco.
pubmed doi rcsb
molecule keywords ORF134
source organism Synechococcus sp.
molecule tags Chaperone
total genus 49
structure length 110
sequence length 110
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2007-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02341 RcbX RbcX protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2penA00
3Q20A 2Z46A 3RG6C 5BS2A 5BS1A 2PEMA 2PEIA 3HYBA 4GR6A 2PY8A 2Z45A 2PEOA 4GR2A 2PEKA 2PEQA 2PEJA 2Z44A 2PENA
chains in the Genus database with same CATH superfamily
1K73Q 4U0DA 2BUOA 3CCQP 2K0DX 2PEMA 4GR6A 2KOOA 4QKOA 1QVGO 2M8PA 3CE7A 4U0AA 2MVVA 3LMOA 2GDYA 1HY8A 1OR5A 5HVCA 2WPTA 2MY5A 3EJEA 1VQNP 1RO2A 1VKUA 1VQ6P 2K92A 2GYKA 2JYGA 3CCVP 1N8RQ 2KOSA 3DTJA 2M8NA 1K30A 3E2DA 4QNBA 2K5XA 2KGCA 1HQBA 3EJDA 5JPAA 1IUQA 2JGPA 1VQ7P 1BXIA 1A8OA 2MR7A 2LMLA 2EG5A 2KG8A 2K93A 4HKGA 2JU2A 2KG6A 1UNKA 2AVAA 3H47A 4XROA 2KOQA 3EJBA 4UHPB 1Q7YQ 2PENA 4PXHB 2N6YA 2JQ4A 3DS1A 2PEKA 2JYLA 3CCMP 2GDXA 1EOQA 4U0CA 2VLNA 3GZMA 2VSQA 3HYBA 1BAJA 2N50A 2OTJP 2EIAA 5HGMA 2LTEA 2FVFA 2N6ZA 4H2YC 2KGEA 2JB0A 2VLPA 1K9MQ 4GR2A 2JAZA 2KORA 1M6NA 4H2WC 1DNYA 2FADA 1Z6MA 2MD9A 2K2QA 7CEIA 2M8LA 2K0YA 3CCSP 1RO0A 1FR2A 2FQ1A 3GKLC 3G29A 1VQ8P 1NJIQ 4U0BA 2LIUA 2GZJA 2BHVA 3NTEA 1QVFO 3DS3A 1T8KA 1L0HA 1A43A 3H0DA 2QEXP 1YJNP 3G21A 3HZQA 1YI2P 2MVUA 2Z44A 5KP7B 2KOPA 5F2KA 1Q86Q 5HGLA 1EMVA 1RNIA 5HV8A 1AF8A 3CC7P 1D1DA 3G71P 1GXGA 2L9FA 2MF4A 2NO8A 3RG2A 3G4SP 3DS2A 2L22A 1M90Q 3CCJP 4R0MA 3NY7B 3CCRP 2LF4A 4BPHA 2XT1A 2CWOA 3DPHA 1F80D 2PY8A 4PWVB 5CZDB 2FHSC 3B4QA 2KR5A 4U0FA 5BS1A 2XV6A 2LL8A 1ZMBA 4CA3A 2FQ0A 5HGOA 3M1MA 1JJ2O 2L0QA 1IMPA 1CEIA 2OTLP 4COPA 2KODA 1UJZA 1YJWP 4XFZA 4XFXA 2FACA 1Q82Q 1M1KQ 1S72P 2CQ8A 2KWLA 2LPKA 3CCUP 3CXCO 3CD6P 2K0XA 1EIAA 2XXMA 1W2BO 1YIJP 2EFJA 2GZFA 3CCLP 2FAEA 2CNRA 2JO0A 2FQ2A 1ZNVA 3CC4P 3DS5A 1IMQA 2VLOA 5F2NA 5BS2A 2KG9A 3DS4A 2QA4P 3GZLA 2CGQA 2DNWA 3I56P 4PH1A 5DCKA 4COCA 1K8AQ 4XFYA 2ONTA 1VQPP 2LKIA 2KW2A 1KD1Q 4MRTC 4DG9A 3G6EP 1E6JP 2GZGA 5HGNA 2LIWA 2XZ1C 2QNWA 1DV5A 1AYIA 2N5HA 2EHTA 1AUMA 1Q81Q 2Z46A 5EW5E 3P05A 2LOLA 2XZ0D 2N5IA 3CPWO 2Z45A 3G26A 4XRQA 3I55P 2P9XA 3CC2P 4H2XC 4BPFA 1VQOP 2L6EA 2KGAA 2CG5B 1QRJA 3H4EA 5F2OA 2E1MA 2DGYA 3G28A 2AFEA 1L0IA 2PEQA 3CCEP 2PNGA 1VQ9P 3LRYA 2AF8A 2AFDA 4U0EA 4BPGA 2GZIA 1NQ4A 2PEOA 3CMAP 3G1IA 2X2BA 2MR8A 1YJ9P 2KGDA 1KLPA 1VQMP 4WYMA 2EHSA 2PEJA 2JBGA 4IZ6A 4M0IA 2VLQA 3G0VA 1KQSO 3VRLC 1YITP 5KP6B 2ROQA 3WBHA 2FVEA 2GZEA 2N98A 3CMEP 3G1GA 2FVAA 2L4BA 3GJNA 1GXHA 3Q20A 1VQ4P 1KC8Q 1YHQP 2JU1A 4IPYA 1VQ5P 1ACPA 3B5IA 5I4TG 4F37A 1X3OA 2K94A 1GPJA 2ERHA 1M74A 1M6EX 3RG6C 5KP8B 1VQKP 5EJDA 2PEIA 2M5RA 2OARA 2GDWA 4PH0A 4NEOA 3DS0A 3OW2O 3MGEA 1VHNA 1MZ8A 1VQLP 1E0HA 3U43A
chains in the Genus database with same CATH topology
1BAJA 4U0FA 1VQOP 2L6EA 1K73Q 2OTJP 2EIAA 4U0DA 2BUOA 3CCQP 5HGMA 1QRJA 5BS1A 2PEMA 2XV6A 3H4EA 4GR6A 1ZMBA 5HGOA 5F2OA 3M1MA 2E1MA 2DGYA 3G28A 1QVGO 1JJ2O 2M8PA 2OTLP 4COPA 1K9MQ 2KODA 4GR2A 4U0AA 2PEQA 3CCEP 1YJWP 4XFZA 1M6NA 4XFXA 1VQ9P 1M1KQ 1Q82Q 1S72P 3LRYA 3CCUP 3CXCO 4U0EA 3CD6P 2PEOA 1EIAA 3CMAP 3G1IA 2XXMA 2M8LA 1YJ9P 3CCSP 2EFJA 1YIJP 1RO0A 1W2BO 3CCLP 1RO2A 1VQNP 3G29A 1VQ8P 3I55P 1VQ6P 2JO0A 1NJIQ 2JYGA 3CCVP 1N8RQ 4U0BA 3CC4P 1VQMP 4WYMA 3DTJA 2BHVA 3NTEA 2M8NA 3DS5A 1QVFO 1K30A 3E2DA 2PEJA 3DS3A 5F2NA 5BS2A 4QNBA 1A43A 3DS4A 3H0DA 2QEXP 4M0IA 2QA4P 1YJNP 1KQSO 3G0VA 3VRLC 1YITP 3G21A 3HZQA 5JPAA 3I56P 1IUQA 4PH1A 1YI2P 1VQ7P 3WBHA 5DCKA 1A8OA 2Z44A 3CMEP 3G1GA 2EG5A 5F2KA 1Q86Q 5HGLA 4COCA 1K8AQ 4XFYA 2ONTA 1VQPP 1RNIA 3Q20A 1VQ4P 1KC8Q 1KD1Q 3H47A 1YHQP 3G6EP 4XROA 4IPYA 1VQ5P 1E6JP 1Q7YQ 3B5IA 2PENA 5I4TG 5HGNA 3CC7P 1D1DA 3G71P 3DS1A 1AUMA 1Q81Q 1M74A 1M6EX 3RG6C 2Z46A 1VQKP 3G4SP 2PEIA 3P05A 2PEKA 3DS2A 2JYLA 2OARA 3CCMP 4PH0A 1M90Q 3DS0A 3CPWO 3CCJP 2Z45A 3G26A 3OW2O 1EOQA 4XRQA 3MGEA 4U0CA 3CCRP 2LF4A 2XT1A 2CWOA 3DPHA 1VQLP 3HYBA 2PY8A 2P9XA 3CC2P
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3Q20 A;  2Z46 A;  3RG6 C;  5BS2 A;  5BS1 A;  2PEM A;  2PEI A;  3HYB A;  4GR6 A;  2PY8 A;  2Z45 A;  2PEO A;  4GR2 A;  2PEK A;  2PEQ A;  2PEJ A;  2Z44 A;  2PEN A; 
#chains in the Genus database with same CATH topology
 1K73 Q;  4U0D A;  2BUO A;  3CCQ P;  2K0D X;  2PEM A;  4GR6 A;  2KOO A;  4QKO A;  1QVG O;  2M8P A;  3CE7 A;  4U0A A;  2MVV A;  3LMO A;  2GDY A;  1HY8 A;  1OR5 A;  5HVC A;  2WPT A;  2MY5 A;  3EJE A;  1VQN P;  1RO2 A;  1VKU A;  1VQ6 P;  2K92 A;  2GYK A;  2JYG A;  3CCV P;  1N8R Q;  2KOS A;  3DTJ A;  2M8N A;  1K30 A;  3E2D A;  4QNB A;  2K5X A;  2KGC A;  1HQB A;  3EJD A;  5JPA A;  1IUQ A;  2JGP A;  1VQ7 P;  1BXI A;  1A8O A;  2MR7 A;  2LML A;  2EG5 A;  2KG8 A;  2K93 A;  4HKG A;  2JU2 A;  2KG6 A;  1UNK A;  2AVA A;  3H47 A;  4XRO A;  2KOQ A;  3EJB A;  4UHP B;  1Q7Y Q;  2PEN A;  4PXH B;  2N6Y A;  2JQ4 A;  3DS1 A;  2PEK A;  2JYL A;  3CCM P;  2GDX A;  1EOQ A;  4U0C A;  2VLN A;  3GZM A;  2VSQ A;  3HYB A;  1BAJ A;  2N50 A;  2OTJ P;  2EIA A;  5HGM A;  2LTE A;  2FVF A;  2N6Z A;  4H2Y C;  2KGE A;  2JB0 A;  2VLP A;  1K9M Q;  4GR2 A;  2JAZ A;  2KOR A;  1M6N A;  4H2W C;  1DNY A;  2FAD A;  1Z6M A;  2MD9 A;  2K2Q A;  7CEI A;  2M8L A;  2K0Y A;  3CCS P;  1RO0 A;  1FR2 A;  2FQ1 A;  3GKL C;  3G29 A;  1VQ8 P;  1NJI Q;  4U0B A;  2LIU A;  2GZJ A;  2BHV A;  3NTE A;  1QVF O;  3DS3 A;  1T8K A;  1L0H A;  1A43 A;  3H0D A;  2QEX P;  1YJN P;  3G21 A;  3HZQ A;  1YI2 P;  2MVU A;  2Z44 A;  5KP7 B;  2KOP A;  5F2K A;  1Q86 Q;  5HGL A;  1EMV A;  1RNI A;  5HV8 A;  1AF8 A;  3CC7 P;  1D1D A;  3G71 P;  1GXG A;  2L9F A;  2MF4 A;  2NO8 A;  3RG2 A;  3G4S P;  3DS2 A;  2L22 A;  1M90 Q;  3CCJ P;  4R0M A;  3NY7 B;  3CCR P;  2LF4 A;  4BPH A;  2XT1 A;  2CWO A;  3DPH A;  1F80 D;  2PY8 A;  4PWV B;  5CZD B;  2FHS C;  3B4Q A;  2KR5 A;  4U0F A;  5BS1 A;  2XV6 A;  2LL8 A;  1ZMB A;  4CA3 A;  2FQ0 A;  5HGO A;  3M1M A;  1JJ2 O;  2L0Q A;  1IMP A;  1CEI A;  2OTL P;  4COP A;  2KOD A;  1UJZ A;  1YJW P;  4XFZ A;  4XFX A;  2FAC A;  1Q82 Q;  1M1K Q;  1S72 P;  2CQ8 A;  2KWL A;  2LPK A;  3CCU P;  3CXC O;  3CD6 P;  2K0X A;  1EIA A;  2XXM A;  1W2B O;  1YIJ P;  2EFJ A;  2GZF A;  3CCL P;  2FAE A;  2CNR A;  2JO0 A;  2FQ2 A;  1ZNV A;  3CC4 P;  3DS5 A;  1IMQ A;  2VLO A;  5F2N A;  5BS2 A;  2KG9 A;  3DS4 A;  2QA4 P;  3GZL A;  2CGQ A;  2DNW A;  3I56 P;  4PH1 A;  5DCK A;  4COC A;  1K8A Q;  4XFY A;  2ONT A;  1VQP P;  2LKI A;  2KW2 A;  1KD1 Q;  4MRT C;  4DG9 A;  3G6E P;  1E6J P;  2GZG A;  5HGN A;  2LIW A;  2XZ1 C;  2QNW A;  1DV5 A;  1AYI A;  2N5H A;  2EHT A;  1AUM A;  1Q81 Q;  2Z46 A;  5EW5 E;  3P05 A;  2LOL A;  2XZ0 D;  2N5I A;  3CPW O;  2Z45 A;  3G26 A;  4XRQ A;  3I55 P;  2P9X A;  3CC2 P;  4H2X C;  4BPF A;  1VQO P;  2L6E A;  2KGA A;  2CG5 B;  1QRJ A;  3H4E A;  5F2O A;  2E1M A;  2DGY A;  3G28 A;  2AFE A;  1L0I A;  2PEQ A;  3CCE P;  2PNG A;  1VQ9 P;  3LRY A;  2AF8 A;  2AFD A;  4U0E A;  4BPG A;  2GZI A;  1NQ4 A;  2PEO A;  3CMA P;  3G1I A;  2X2B A;  2MR8 A;  1YJ9 P;  2KGD A;  1KLP A;  1VQM P;  4WYM A;  2EHS A;  2PEJ A;  2JBG A;  4IZ6 A;  4M0I A;  2VLQ A;  3G0V A;  1KQS O;  3VRL C;  1YIT P;  5KP6 B;  2ROQ A;  3WBH A;  2FVE A;  2GZE A;  2N98 A;  3CME P;  3G1G A;  2FVA A;  2L4B A;  3GJN A;  1GXH A;  3Q20 A;  1VQ4 P;  1KC8 Q;  1YHQ P;  2JU1 A;  4IPY A;  1VQ5 P;  1ACP A;  3B5I A;  5I4T G;  4F37 A;  1X3O A;  2K94 A;  1GPJ A;  2ERH A;  1M74 A;  1M6E X;  3RG6 C;  5KP8 B;  1VQK P;  5EJD A;  2PEI A;  2M5R A;  2OAR A;  2GDW A;  4PH0 A;  4NEO A;  3DS0 A;  3OW2 O;  3MGE A;  1VHN A;  1MZ8 A;  1VQL P;  1E0H A;  3U43 A; 
#chains in the Genus database with same CATH homology
 1BAJ A;  4U0F A;  1VQO P;  2L6E A;  1K73 Q;  2OTJ P;  2EIA A;  4U0D A;  2BUO A;  3CCQ P;  5HGM A;  1QRJ A;  5BS1 A;  2PEM A;  2XV6 A;  3H4E A;  4GR6 A;  1ZMB A;  5HGO A;  5F2O A;  3M1M A;  2E1M A;  2DGY A;  3G28 A;  1QVG O;  1JJ2 O;  2M8P A;  2OTL P;  4COP A;  1K9M Q;  2KOD A;  4GR2 A;  4U0A A;  2PEQ A;  3CCE P;  1YJW P;  4XFZ A;  1M6N A;  4XFX A;  1VQ9 P;  1M1K Q;  1Q82 Q;  1S72 P;  3LRY A;  3CCU P;  3CXC O;  4U0E A;  3CD6 P;  2PEO A;  1EIA A;  3CMA P;  3G1I A;  2XXM A;  2M8L A;  1YJ9 P;  3CCS P;  2EFJ A;  1YIJ P;  1RO0 A;  1W2B O;  3CCL P;  1RO2 A;  1VQN P;  3G29 A;  1VQ8 P;  3I55 P;  1VQ6 P;  2JO0 A;  1NJI Q;  2JYG A;  3CCV P;  1N8R Q;  4U0B A;  3CC4 P;  1VQM P;  4WYM A;  3DTJ A;  2BHV A;  3NTE A;  2M8N A;  3DS5 A;  1QVF O;  1K30 A;  3E2D A;  2PEJ A;  3DS3 A;  5F2N A;  5BS2 A;  4QNB A;  1A43 A;  3DS4 A;  3H0D A;  2QEX P;  4M0I A;  2QA4 P;  1YJN P;  1KQS O;  3G0V A;  3VRL C;  1YIT P;  3G21 A;  3HZQ A;  5JPA A;  3I56 P;  1IUQ A;  4PH1 A;  1YI2 P;  1VQ7 P;  3WBH A;  5DCK A;  1A8O A;  2Z44 A;  3CME P;  3G1G A;  2EG5 A;  5F2K A;  1Q86 Q;  5HGL A;  4COC A;  1K8A Q;  4XFY A;  2ONT A;  1VQP P;  1RNI A;  3Q20 A;  1VQ4 P;  1KC8 Q;  1KD1 Q;  3H47 A;  1YHQ P;  3G6E P;  4XRO A;  4IPY A;  1VQ5 P;  1E6J P;  1Q7Y Q;  3B5I A;  2PEN A;  5I4T G;  5HGN A;  3CC7 P;  1D1D A;  3G71 P;  3DS1 A;  1AUM A;  1Q81 Q;  1M74 A;  1M6E X;  3RG6 C;  2Z46 A;  1VQK P;  3G4S P;  2PEI A;  3P05 A;  2PEK A;  3DS2 A;  2JYL A;  2OAR A;  3CCM P;  4PH0 A;  1M90 Q;  3DS0 A;  3CPW O;  3CCJ P;  2Z45 A;  3G26 A;  3OW2 O;  1EOQ A;  4XRQ A;  3MGE A;  4U0C A;  3CCR P;  2LF4 A;  2XT1 A;  2CWO A;  3DPH A;  1VQL P;  3HYB A;  2PY8 A;  2P9X A;  3CC2 P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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