2PENA

Crystal structure of rbcx, crystal form i
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
110
structure length
110
Chain Sequence
EFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
source organism Synechococcus sp.
publication title Structure and Function of RbcX, an Assembly Chaperone for Hexadecameric Rubisco.
pubmed doi rcsb
molecule keywords ORF134
total genus 49
structure length 110
sequence length 110
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2007-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02341 RcbX RbcX protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2penA00
2PEOA 4GR6A 5BS1A 2Z44A 2Z46A 3HYBA 2PEKA 2PEQA 2PEJA 2Z45A 2PEIA 4GR2A 3RG6C 5BS2A 2PENA 2PY8A 3Q20A 2PEMA
chains in the Genus database with same CATH superfamily
1IMPA 3CXCO 3I55P 2KGEA 2GZJA 3G21A 5F2OA 2FVEA 2JGPA 4IPYA 1ZNVA 1RO0A 1N8RQ 5HVCA 2ONTA 3CE7A 2MY5A 3CC7P 2P9XA 2LL8A 5JPAA 1VQ4P 2WPTA 3RG6C 1VQ8P 2BHVA 1S72P 1K30A 1VQ5P 2VLQA 2AFDA 1M6EX 1BXIA 1DNYA 2NO8A 4UHPB 3MGEA 4PH0A 1VQOP 1F80D 2N6YA 4CA3A 2FAEA 2AFEA 2CNRA 3H4EA 2KR5A 4GR6A 2QEXP 2LIUA 4XROA 5EJDA 1K8AQ 1A8OA 3G1GA 1EOQA 1VQPP 4M0IA 1AUMA 2MD9A 3M1MA 4PH1A 2PEMA 2FHSC 3H0DA 2KG6A 2QA4P 3CD6P 2OTLP 4PXHB 1Z6MA 2GDWA 4HKGA 2L4BA 3CCQP 3LRYA 3WBHA 4F37A 1CEIA 2FACA 3CMEP 2M5RA 3CCLP 3VRLC 1D1DA 2AVAA 2K0DX 2JAZA 5HV8A 2N5HA 2FQ1A 2JU2A 4BPHA 2JO0A 5KP8B 2FVAA 2K2QA 1JJ2O 2GZFA 5HGLA 5HGNA 1UNKA 1Q7YQ 2PEJA 2PENA 1YJ9P 3CC2P 3G26A 2FQ2A 2M8LA 2L9FA 2L22A 1K9MQ 1ACPA 3B4QA 1UJZA 4COPA 5BS2A 2VSQA 2MF4A 3HZQA 4BPGA 2PEKA 4QKOA 2N98A 3NY7B 2QNWA 2KOSA 2PEQA 5EW5E 1EMVA 3EJDA 2KOPA 1ZMBA 2OARA 3G71P 2XT1A 2MVVA 2N5IA 2VLPA 2PEIA 4U0DA 3G6EP 2GZGA 3DS4A 1Q81Q 2L6EA 1RO2A 2JU1A 5KP6B 2MVUA 4H2YC 3DS0A 3G29A 4U0BA 2EG5A 1L0IA 2JYGA 1DV5A 3CCUP 4BPFA 5CZDB 1A43A 2KGCA 2Z44A 3DS3A 1VQ7P 4H2XC 2KGAA 2FADA 5F2KA 2LIWA 2LF4A 3CC4P 2K5XA 2L0QA 2K0XA 3GZLA 2AF8A 1VQ9P 1GXHA 2GDXA 3P05A 3E2DA 1Q82Q 1BAJA 1RNIA 4NEOA 1IMQA 2KOQA 4R0MA 2VLNA 1L0HA 2EIAA 1E0HA 2PY8A 1OR5A 3RG2A 2CQ8A 1VQLP 2XZ0D 1KC8Q 3CCRP 1M6NA 1QVGO 2PNGA 1E6JP 1MZ8A 2N50A 1YITP 1VQNP 4U0EA 1YJWP 4H2WC 3CCMP 4XFZA 2LMLA 2KWLA 3OW2O 5DCKA 2Z46A 3EJEA 2ROQA 1AYIA 2K0YA 2VLOA 4COCA 2N6ZA 3GJNA 1X3OA 2KGDA 4U0AA 3G0VA 3CCJP 3DS2A 2JBGA 2EFJA 2E1MA 1HY8A 2KORA 2GZIA 1YIJP 7CEIA 2FQ0A 5HGOA 3Q20A 3LMOA 2K93A 4IZ6A 4QNBA 2ERHA 3DTJA 1Q86Q 2BUOA 4XFYA 2XZ1C 4MRTC 2LTEA 1T8KA 5F2NA 1M90Q 2JB0A 2KG9A 2KOOA 3G28A 1YI2P 1YJNP 3CCVP 4WYMA 1VHNA 3EJBA 4U0FA 1GXGA 2EHSA 2JQ4A 4XRQA 2GDYA 4GR2A 4PWVB 3B5IA 2JYLA 1HQBA 5KP7B 3CCSP 1QRJA 5BS1A 2XV6A 1M74A 3U43A 2X2BA 3CPWO 2M8PA 1M1KQ 1KD1Q 2OTJP 1NJIQ 3HYBA 2EHTA 2Z45A 2LOLA 2KW2A 2CG5B 2CWOA 2MR7A 4U0CA 2K94A 3CMAP 5I4TG 2LPKA 2XXMA 2PEOA 3DS5A 1YHQP 2M8NA 1KLPA 1AF8A 2FVFA 1W2BO 1IUQA 3G4SP 1NQ4A 3DPHA 3NTEA 1VQKP 1EIAA 2KODA 3I56P 2KG8A 2CGQA 1KQSO 2GZEA 1VKUA 1GPJA 2DGYA 2MR8A 1VQMP 2K92A 4XFXA 3GKLC 3CCEP 1K73Q 1VQ6P 2LKIA 2DNWA 3H47A 3GZMA 3G1IA 2GYKA 1QVFO 1FR2A 3DS1A 5HGMA 4DG9A
chains in the Genus database with same CATH topology
1Q82Q 1BAJA 3CXCO 3I55P 1RNIA 3CCSP 3G21A 2JO0A 5F2OA 1QRJA 5BS1A 2EIAA 1JJ2O 2XV6A 5HGLA 2PY8A 5HGNA 4IPYA 1N8RQ 1RO0A 1M74A 1Q7YQ 3CPWO 2PEJA 1VQLP 1KC8Q 2M8PA 3CCRP 2ONTA 2PENA 1M6NA 1YJ9P 3CC2P 1QVGO 1M1KQ 1E6JP 3CC7P 3G26A 1VQNP 1YITP 1KD1Q 2P9XA 2M8LA 5JPAA 1VQ4P 3RG6C 1VQ8P 2OTJP 4U0EA 2BHVA 1NJIQ 1YJWP 1K9MQ 1S72P 3HYBA 1K30A 1VQ5P 2Z45A 4COPA 5BS2A 3CCMP 4XFZA 1M6EX 3OW2O 5DCKA 3HZQA 2Z46A 2PEKA 2CWOA 4U0CA 4COCA 3CMAP 5I4TG 2PEQA 3MGEA 4PH0A 4U0AA 1ZMBA 2OARA 3G71P 3G0VA 3CCJP 1VQOP 3DS2A 2EFJA 2E1MA 2XXMA 2PEOA 3DS5A 1YHQP 2M8NA 2XT1A 1W2BO 1YIJP 3H4EA 5HGOA 1IUQA 3Q20A 2PEIA 4GR6A 4U0DA 3G6EP 2QEXP 4XROA 3G4SP 3DPHA 3DS4A 1Q81Q 1K8AQ 1A8OA 3NTEA 4QNBA 2L6EA 3G1GA 1VQKP 1EOQA 1RO2A 3DTJA 1Q86Q 1EIAA 2BUOA 4M0IA 1VQPP 2KODA 1AUMA 4XFYA 3I56P 3M1MA 1KQSO 3DS0A 4PH1A 3G29A 4U0BA 2EG5A 2PEMA 2JYGA 3H0DA 2QA4P 3CD6P 2OTLP 5F2NA 1M90Q 3CCUP 2DGYA 1A43A 1VQMP 2Z44A 3DS3A 3G28A 1YI2P 1VQ7P 5HGMA 1YJNP 4XFXA 3CCQP 3CCEP 5F2KA 3LRYA 3CCVP 1K73Q 1VQ6P 4WYMA 2LF4A 3H47A 3CC4P 3WBHA 3G1IA 1VQ9P 3CMEP 1QVFO 4U0FA 3CCLP 3VRLC 1D1DA 3P05A 3E2DA 4XRQA 3DS1A 4GR2A 3B5IA 2JYLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PEO A;  4GR6 A;  5BS1 A;  2Z44 A;  2Z46 A;  3HYB A;  2PEK A;  2PEQ A;  2PEJ A;  2Z45 A;  2PEI A;  4GR2 A;  3RG6 C;  5BS2 A;  2PEN A;  2PY8 A;  3Q20 A;  2PEM A; 
#chains in the Genus database with same CATH topology
 1IMP A;  3CXC O;  3I55 P;  2KGE A;  2GZJ A;  3G21 A;  5F2O A;  2FVE A;  2JGP A;  4IPY A;  1ZNV A;  1RO0 A;  1N8R Q;  5HVC A;  2ONT A;  3CE7 A;  2MY5 A;  3CC7 P;  2P9X A;  2LL8 A;  5JPA A;  1VQ4 P;  2WPT A;  3RG6 C;  1VQ8 P;  2BHV A;  1S72 P;  1K30 A;  1VQ5 P;  2VLQ A;  2AFD A;  1M6E X;  1BXI A;  1DNY A;  2NO8 A;  4UHP B;  3MGE A;  4PH0 A;  1VQO P;  1F80 D;  2N6Y A;  4CA3 A;  2FAE A;  2AFE A;  2CNR A;  3H4E A;  2KR5 A;  4GR6 A;  2QEX P;  2LIU A;  4XRO A;  5EJD A;  1K8A Q;  1A8O A;  3G1G A;  1EOQ A;  1VQP P;  4M0I A;  1AUM A;  2MD9 A;  3M1M A;  4PH1 A;  2PEM A;  2FHS C;  3H0D A;  2KG6 A;  2QA4 P;  3CD6 P;  2OTL P;  4PXH B;  1Z6M A;  2GDW A;  4HKG A;  2L4B A;  3CCQ P;  3LRY A;  3WBH A;  4F37 A;  1CEI A;  2FAC A;  3CME P;  2M5R A;  3CCL P;  3VRL C;  1D1D A;  2AVA A;  2K0D X;  2JAZ A;  5HV8 A;  2N5H A;  2FQ1 A;  2JU2 A;  4BPH A;  2JO0 A;  5KP8 B;  2FVA A;  2K2Q A;  1JJ2 O;  2GZF A;  5HGL A;  5HGN A;  1UNK A;  1Q7Y Q;  2PEJ A;  2PEN A;  1YJ9 P;  3CC2 P;  3G26 A;  2FQ2 A;  2M8L A;  2L9F A;  2L22 A;  1K9M Q;  1ACP A;  3B4Q A;  1UJZ A;  4COP A;  5BS2 A;  2VSQ A;  2MF4 A;  3HZQ A;  4BPG A;  2PEK A;  4QKO A;  2N98 A;  3NY7 B;  2QNW A;  2KOS A;  2PEQ A;  5EW5 E;  1EMV A;  3EJD A;  2KOP A;  1ZMB A;  2OAR A;  3G71 P;  2XT1 A;  2MVV A;  2N5I A;  2VLP A;  2PEI A;  4U0D A;  3G6E P;  2GZG A;  3DS4 A;  1Q81 Q;  2L6E A;  1RO2 A;  2JU1 A;  5KP6 B;  2MVU A;  4H2Y C;  3DS0 A;  3G29 A;  4U0B A;  2EG5 A;  1L0I A;  2JYG A;  1DV5 A;  3CCU P;  4BPF A;  5CZD B;  1A43 A;  2KGC A;  2Z44 A;  3DS3 A;  1VQ7 P;  4H2X C;  2KGA A;  2FAD A;  5F2K A;  2LIW A;  2LF4 A;  3CC4 P;  2K5X A;  2L0Q A;  2K0X A;  3GZL A;  2AF8 A;  1VQ9 P;  1GXH A;  2GDX A;  3P05 A;  3E2D A;  1Q82 Q;  1BAJ A;  1RNI A;  4NEO A;  1IMQ A;  2KOQ A;  4R0M A;  2VLN A;  1L0H A;  2EIA A;  1E0H A;  2PY8 A;  1OR5 A;  3RG2 A;  2CQ8 A;  1VQL P;  2XZ0 D;  1KC8 Q;  3CCR P;  1M6N A;  1QVG O;  2PNG A;  1E6J P;  1MZ8 A;  2N50 A;  1YIT P;  1VQN P;  4U0E A;  1YJW P;  4H2W C;  3CCM P;  4XFZ A;  2LML A;  2KWL A;  3OW2 O;  5DCK A;  2Z46 A;  3EJE A;  2ROQ A;  1AYI A;  2K0Y A;  2VLO A;  4COC A;  2N6Z A;  3GJN A;  1X3O A;  2KGD A;  4U0A A;  3G0V A;  3CCJ P;  3DS2 A;  2JBG A;  2EFJ A;  2E1M A;  1HY8 A;  2KOR A;  2GZI A;  1YIJ P;  7CEI A;  2FQ0 A;  5HGO A;  3Q20 A;  3LMO A;  2K93 A;  4IZ6 A;  4QNB A;  2ERH A;  3DTJ A;  1Q86 Q;  2BUO A;  4XFY A;  2XZ1 C;  4MRT C;  2LTE A;  1T8K A;  5F2N A;  1M90 Q;  2JB0 A;  2KG9 A;  2KOO A;  3G28 A;  1YI2 P;  1YJN P;  3CCV P;  4WYM A;  1VHN A;  3EJB A;  4U0F A;  1GXG A;  2EHS A;  2JQ4 A;  4XRQ A;  2GDY A;  4GR2 A;  4PWV B;  3B5I A;  2JYL A;  1HQB A;  5KP7 B;  3CCS P;  1QRJ A;  5BS1 A;  2XV6 A;  1M74 A;  3U43 A;  2X2B A;  3CPW O;  2M8P A;  1M1K Q;  1KD1 Q;  2OTJ P;  1NJI Q;  3HYB A;  2EHT A;  2Z45 A;  2LOL A;  2KW2 A;  2CG5 B;  2CWO A;  2MR7 A;  4U0C A;  2K94 A;  3CMA P;  5I4T G;  2LPK A;  2XXM A;  2PEO A;  3DS5 A;  1YHQ P;  2M8N A;  1KLP A;  1AF8 A;  2FVF A;  1W2B O;  1IUQ A;  3G4S P;  1NQ4 A;  3DPH A;  3NTE A;  1VQK P;  1EIA A;  2KOD A;  3I56 P;  2KG8 A;  2CGQ A;  1KQS O;  2GZE A;  1VKU A;  1GPJ A;  2DGY A;  2MR8 A;  1VQM P;  2K92 A;  4XFX A;  3GKL C;  3CCE P;  1K73 Q;  1VQ6 P;  2LKI A;  2DNW A;  3H47 A;  3GZM A;  3G1I A;  2GYK A;  1QVF O;  1FR2 A;  3DS1 A;  5HGM A;  4DG9 A; 
#chains in the Genus database with same CATH homology
 1Q82 Q;  1BAJ A;  3CXC O;  3I55 P;  1RNI A;  3CCS P;  3G21 A;  2JO0 A;  5F2O A;  1QRJ A;  5BS1 A;  2EIA A;  1JJ2 O;  2XV6 A;  5HGL A;  2PY8 A;  5HGN A;  4IPY A;  1N8R Q;  1RO0 A;  1M74 A;  1Q7Y Q;  3CPW O;  2PEJ A;  1VQL P;  1KC8 Q;  2M8P A;  3CCR P;  2ONT A;  2PEN A;  1M6N A;  1YJ9 P;  3CC2 P;  1QVG O;  1M1K Q;  1E6J P;  3CC7 P;  3G26 A;  1VQN P;  1YIT P;  1KD1 Q;  2P9X A;  2M8L A;  5JPA A;  1VQ4 P;  3RG6 C;  1VQ8 P;  2OTJ P;  4U0E A;  2BHV A;  1NJI Q;  1YJW P;  1K9M Q;  1S72 P;  3HYB A;  1K30 A;  1VQ5 P;  2Z45 A;  4COP A;  5BS2 A;  3CCM P;  4XFZ A;  1M6E X;  3OW2 O;  5DCK A;  3HZQ A;  2Z46 A;  2PEK A;  2CWO A;  4U0C A;  4COC A;  3CMA P;  5I4T G;  2PEQ A;  3MGE A;  4PH0 A;  4U0A A;  1ZMB A;  2OAR A;  3G71 P;  3G0V A;  3CCJ P;  1VQO P;  3DS2 A;  2EFJ A;  2E1M A;  2XXM A;  2PEO A;  3DS5 A;  1YHQ P;  2M8N A;  2XT1 A;  1W2B O;  1YIJ P;  3H4E A;  5HGO A;  1IUQ A;  3Q20 A;  2PEI A;  4GR6 A;  4U0D A;  3G6E P;  2QEX P;  4XRO A;  3G4S P;  3DPH A;  3DS4 A;  1Q81 Q;  1K8A Q;  1A8O A;  3NTE A;  4QNB A;  2L6E A;  3G1G A;  1VQK P;  1EOQ A;  1RO2 A;  3DTJ A;  1Q86 Q;  1EIA A;  2BUO A;  4M0I A;  1VQP P;  2KOD A;  1AUM A;  4XFY A;  3I56 P;  3M1M A;  1KQS O;  3DS0 A;  4PH1 A;  3G29 A;  4U0B A;  2EG5 A;  2PEM A;  2JYG A;  3H0D A;  2QA4 P;  3CD6 P;  2OTL P;  5F2N A;  1M90 Q;  3CCU P;  2DGY A;  1A43 A;  1VQM P;  2Z44 A;  3DS3 A;  3G28 A;  1YI2 P;  1VQ7 P;  5HGM A;  1YJN P;  4XFX A;  3CCQ P;  3CCE P;  5F2K A;  3LRY A;  3CCV P;  1K73 Q;  1VQ6 P;  4WYM A;  2LF4 A;  3H47 A;  3CC4 P;  3WBH A;  3G1I A;  1VQ9 P;  3CME P;  1QVF O;  4U0F A;  3CCL P;  3VRL C;  1D1D A;  3P05 A;  3E2D A;  4XRQ A;  3DS1 A;  4GR2 A;  3B5I A;  2JYL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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