2GZJA

Crystal structure of the e9 dnase domain with a mutant immunity protein im9 (d51a)
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
83
structure length
83
Chain Sequence
b'LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSALIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the Complex of the Colicin E9 DNase Domain with a Mutant Immunity Protein, IM9 (D51A)
rcsb
molecule keywords Colicin-E9 immunity protein
source organism Escherichia coli k12
molecule tags Antibiotic/antibiotic inhibitor
total genus 29
structure length 83
sequence length 83
chains with identical sequence E
ec nomenclature
pdb deposition date 2006-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2gzjA00
2JAZA 1AYIA 2VLQA 2K5XA 2GYKA 2GZIA 2GZJA 2K0DX 1IMQA 4QKOA 1IMPA 2VLOA 2VLNA 1ZNVA 2ERHA 2WPTA 1UJZA 3U43A 7CEIA 3GJNA 1E0HA 2NO8A 1GXHA 4F37A 2JB0A 2JBGA 5EW5E 2GZEA 1BXIA 1CEIA 1FR2A 1MZ8A 1GXGA 1EMVA 2VLPA 2GZFA 4UHPB 1UNKA 3GKLC 2GZGA
chains in the Genus database with same CATH superfamily
2Z46A 3B5IA 2K0DX 2MR8A 4PH0A 1E6JP 4XRQA 2CQ8A 2BUOA 5EJDA 1IMPA 2GDXA 4U0DA 1ACPA 7CEIA 2GDWA 1YJWP 2LL8A 1S72P 2CWOA 1ZMBA 2OTLP 2QEXP 4BPGA 1VQ5P 4H2YC 2JYLA 1KC8Q 2CGQA 2PEKA 2XZ0D 2KOQA 1YJ9P 3CC4P 2MF4A 2KWLA 2PEOA 1MZ8A 2MD9A 1GXGA 2KG9A 2N5IA 3DTJA 2XZ1C 3CD6P 2FHSC 3MGEA 2EG5A 3CCRP 2KG6A 1DV5A 1VQ7P 2BHVA 4R0MA 1YI2P 3G28A 2P9XA 3GJNA 4H2XC 5DCKA 4GR6A 3CE7A 2AVAA 2K5XA 1AUMA 2MVUA 5HGLA 1EOQA 5HGOA 2AFDA 4U0FA 1L0IA 2LIUA 4XFZA 4U0BA 2GZEA 3G6EP 1YITP 1BXIA 4WYMA 1M90Q 2Z44A 2KG8A 1UNKA 2GDYA 2N6YA 2FACA 2K94A 2K0XA 5CZDB 2K0YA 3I56P 3DS1A 1VQKP 2PENA 1RNIA 2PEJA 2FVEA 2DGYA 3EJBA 2JB0A 2LF4A 5HV8A 2KGEA 2L0QA 1Z6MA 1HQBA 2ONTA 1DNYA 2EIAA 1Q81Q 1K8AQ 2KOPA 2M5RA 1UJZA 5KP7B 2K93A 4U0CA 2XXMA 3RG2A 3CPWO 3Q20A 2PEMA 2L4BA 1KD1Q 1M1KQ 1YJNP 5KP6B 1IMQA 3DPHA 2L9FA 3VRLC 3P05A 3CCMP 1X3OA 2WPTA 1VQLP 5BS1A 4U0EA 1M6NA 3G29A 2XT1A 3M1MA 1A43A 3H0DA 2Z45A 4BPFA 1FR2A 3NY7B 2FAEA 1K9MQ 2GZFA 1EIAA 2N98A 2LKIA 5BS2A 2KW2A 1KLPA 3H47A 2JO0A 5HVCA 3E2DA 4H2WC 1AF8A 2FQ2A 2N6ZA 3DS0A 2KGDA 1KQSO 1D1DA 2NO8A 1F80D 1L0HA 1A8OA 3G71P 3CCLP 4MRTC 2VLQA 5F2KA 4CA3A 3WBHA 3CCVP 2LTEA 5KP8B 3CCEP 4BPHA 2JYGA 1Q86Q 3HYBA 2JBGA 3DS3A 2QA4P 1RO2A 3G0VA 2JQ4A 3CXCO 2M8NA 5F2OA 1VKUA 2AF8A 1YIJP 2N50A 2OTJP 1T8KA 2PNGA 2ERHA 1GPJA 2FQ0A 3U43A 2KOOA 4HKGA 1VQ9P 4M0IA 2LMLA 2CG5B 1IUQA 3GZMA 3GKLC 1OR5A 2PY8A 3CCJP 2GZJA 1VQMP 5I4TG 4XROA 2FVFA 2LPKA 2MVVA 1N8RQ 4XFXA 3LRYA 3G1IA 2KOSA 2XV6A 3CCSP 2M8PA 4IZ6A 4PWVB 3G4SP 1M74A 1VQNP 3CC7P 3EJDA 1VQOP 2E1MA 2JGPA 1VQPP 5F2NA 2PEQA 1ZNVA 2CNRA 4GR2A 2AFEA 1Q7YQ 3CCQP 2KGCA 2JU2A 3NTEA 3DS2A 1NQ4A 2EHSA 2KORA 4UHPB 3G1GA 1QRJA 3B4QA 2GYKA 1VHNA 2L22A 1QVGO 4QKOA 1YHQP 1VQ6P 2EHTA 3I55P 1QVFO 1E0HA 2QNWA 3GZLA 5EW5E 5JPAA 3CC2P 2L6EA 1AYIA 2X2BA 2OARA 2LIWA 1HY8A 2N5HA 1VQ8P 3EJEA 2VSQA 3DS4A 1K30A 1GXHA 3DS5A 2FVAA 4U0AA 3H4EA 3CMAP 1CEIA 3LMOA 1M6EX 4PXHB 4NEOA 1Q82Q 2JAZA 2K2QA 1W2BO 1BAJA 4COPA 2FQ1A 2KGAA 2JU1A 4IPYA 4QNBA 1NJIQ 2KODA 3HZQA 2EFJA 2KR5A 4XFYA 2K92A 4DG9A 3CCUP 4PH1A 1VQ4P 2MY5A 2GZIA 3G26A 5HGMA 3G21A 2VLOA 3OW2O 2VLNA 2MR7A 2DNWA 1JJ2O 3RG6C 4COCA 5HGNA 2PEIA 2M8LA 3CMEP 4F37A 1K73Q 2LOLA 1RO0A 2FADA 2VLPA 1EMVA 2GZGA 2ROQA
chains in the Genus database with same CATH topology
2JAZA 1AYIA 2VLQA 2K5XA 2GYKA 2GZIA 2GZJA 2K0DX 1IMQA 4QKOA 1IMPA 2VLOA 2VLNA 1ZNVA 2ERHA 2WPTA 1UJZA 3U43A 7CEIA 3GJNA 1E0HA 2NO8A 1GXHA 4F37A 2JB0A 2JBGA 5EW5E 2GZEA 1BXIA 1CEIA 1FR2A 1MZ8A 1GXGA 1EMVA 2VLPA 2GZFA 4UHPB 1UNKA 3GKLC 2GZGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JAZ A;  1AYI A;  2VLQ A;  2K5X A;  2GYK A;  2GZI A;  2GZJ A;  2K0D X;  1IMQ A;  4QKO A;  1IMP A;  2VLO A;  2VLN A;  1ZNV A;  2ERH A;  2WPT A;  1UJZ A;  3U43 A;  7CEI A;  3GJN A;  1E0H A;  2NO8 A;  1GXH A;  4F37 A;  2JB0 A;  2JBG A;  5EW5 E;  2GZE A;  1BXI A;  1CEI A;  1FR2 A;  1MZ8 A;  1GXG A;  1EMV A;  2VLP A;  2GZF A;  4UHP B;  1UNK A;  3GKL C;  2GZG A; 
#chains in the Genus database with same CATH topology
 2Z46 A;  3B5I A;  2K0D X;  2MR8 A;  4PH0 A;  1E6J P;  4XRQ A;  2CQ8 A;  2BUO A;  5EJD A;  1IMP A;  2GDX A;  4U0D A;  1ACP A;  7CEI A;  2GDW A;  1YJW P;  2LL8 A;  1S72 P;  2CWO A;  1ZMB A;  2OTL P;  2QEX P;  4BPG A;  1VQ5 P;  4H2Y C;  2JYL A;  1KC8 Q;  2CGQ A;  2PEK A;  2XZ0 D;  2KOQ A;  1YJ9 P;  3CC4 P;  2MF4 A;  2KWL A;  2PEO A;  1MZ8 A;  2MD9 A;  1GXG A;  2KG9 A;  2N5I A;  3DTJ A;  2XZ1 C;  3CD6 P;  2FHS C;  3MGE A;  2EG5 A;  3CCR P;  2KG6 A;  1DV5 A;  1VQ7 P;  2BHV A;  4R0M A;  1YI2 P;  3G28 A;  2P9X A;  3GJN A;  4H2X C;  5DCK A;  4GR6 A;  3CE7 A;  2AVA A;  2K5X A;  1AUM A;  2MVU A;  5HGL A;  1EOQ A;  5HGO A;  2AFD A;  4U0F A;  1L0I A;  2LIU A;  4XFZ A;  4U0B A;  2GZE A;  3G6E P;  1YIT P;  1BXI A;  4WYM A;  1M90 Q;  2Z44 A;  2KG8 A;  1UNK A;  2GDY A;  2N6Y A;  2FAC A;  2K94 A;  2K0X A;  5CZD B;  2K0Y A;  3I56 P;  3DS1 A;  1VQK P;  2PEN A;  1RNI A;  2PEJ A;  2FVE A;  2DGY A;  3EJB A;  2JB0 A;  2LF4 A;  5HV8 A;  2KGE A;  2L0Q A;  1Z6M A;  1HQB A;  2ONT A;  1DNY A;  2EIA A;  1Q81 Q;  1K8A Q;  2KOP A;  2M5R A;  1UJZ A;  5KP7 B;  2K93 A;  4U0C A;  2XXM A;  3RG2 A;  3CPW O;  3Q20 A;  2PEM A;  2L4B A;  1KD1 Q;  1M1K Q;  1YJN P;  5KP6 B;  1IMQ A;  3DPH A;  2L9F A;  3VRL C;  3P05 A;  3CCM P;  1X3O A;  2WPT A;  1VQL P;  5BS1 A;  4U0E A;  1M6N A;  3G29 A;  2XT1 A;  3M1M A;  1A43 A;  3H0D A;  2Z45 A;  4BPF A;  1FR2 A;  3NY7 B;  2FAE A;  1K9M Q;  2GZF A;  1EIA A;  2N98 A;  2LKI A;  5BS2 A;  2KW2 A;  1KLP A;  3H47 A;  2JO0 A;  5HVC A;  3E2D A;  4H2W C;  1AF8 A;  2FQ2 A;  2N6Z A;  3DS0 A;  2KGD A;  1KQS O;  1D1D A;  2NO8 A;  1F80 D;  1L0H A;  1A8O A;  3G71 P;  3CCL P;  4MRT C;  2VLQ A;  5F2K A;  4CA3 A;  3WBH A;  3CCV P;  2LTE A;  5KP8 B;  3CCE P;  4BPH A;  2JYG A;  1Q86 Q;  3HYB A;  2JBG A;  3DS3 A;  2QA4 P;  1RO2 A;  3G0V A;  2JQ4 A;  3CXC O;  2M8N A;  5F2O A;  1VKU A;  2AF8 A;  1YIJ P;  2N50 A;  2OTJ P;  1T8K A;  2PNG A;  2ERH A;  1GPJ A;  2FQ0 A;  3U43 A;  2KOO A;  4HKG A;  1VQ9 P;  4M0I A;  2LML A;  2CG5 B;  1IUQ A;  3GZM A;  3GKL C;  1OR5 A;  2PY8 A;  3CCJ P;  2GZJ A;  1VQM P;  5I4T G;  4XRO A;  2FVF A;  2LPK A;  2MVV A;  1N8R Q;  4XFX A;  3LRY A;  3G1I A;  2KOS A;  2XV6 A;  3CCS P;  2M8P A;  4IZ6 A;  4PWV B;  3G4S P;  1M74 A;  1VQN P;  3CC7 P;  3EJD A;  1VQO P;  2E1M A;  2JGP A;  1VQP P;  5F2N A;  2PEQ A;  1ZNV A;  2CNR A;  4GR2 A;  2AFE A;  1Q7Y Q;  3CCQ P;  2KGC A;  2JU2 A;  3NTE A;  3DS2 A;  1NQ4 A;  2EHS A;  2KOR A;  4UHP B;  3G1G A;  1QRJ A;  3B4Q A;  2GYK A;  1VHN A;  2L22 A;  1QVG O;  4QKO A;  1YHQ P;  1VQ6 P;  2EHT A;  3I55 P;  1QVF O;  1E0H A;  2QNW A;  3GZL A;  5EW5 E;  5JPA A;  3CC2 P;  2L6E A;  1AYI A;  2X2B A;  2OAR A;  2LIW A;  1HY8 A;  2N5H A;  1VQ8 P;  3EJE A;  2VSQ A;  3DS4 A;  1K30 A;  1GXH A;  3DS5 A;  2FVA A;  4U0A A;  3H4E A;  3CMA P;  1CEI A;  3LMO A;  1M6E X;  4PXH B;  4NEO A;  1Q82 Q;  2JAZ A;  2K2Q A;  1W2B O;  1BAJ A;  4COP A;  2FQ1 A;  2KGA A;  2JU1 A;  4IPY A;  4QNB A;  1NJI Q;  2KOD A;  3HZQ A;  2EFJ A;  2KR5 A;  4XFY A;  2K92 A;  4DG9 A;  3CCU P;  4PH1 A;  1VQ4 P;  2MY5 A;  2GZI A;  3G26 A;  5HGM A;  3G21 A;  2VLO A;  3OW2 O;  2VLN A;  2MR7 A;  2DNW A;  1JJ2 O;  3RG6 C;  4COC A;  5HGN A;  2PEI A;  2M8L A;  3CME P;  4F37 A;  1K73 Q;  2LOL A;  1RO0 A;  2FAD A;  2VLP A;  1EMV A;  2GZG A;  2ROQ A; 
#chains in the Genus database with same CATH homology
 2JAZ A;  1AYI A;  2VLQ A;  2K5X A;  2GYK A;  2GZI A;  2GZJ A;  2K0D X;  1IMQ A;  4QKO A;  1IMP A;  2VLO A;  2VLN A;  1ZNV A;  2ERH A;  2WPT A;  1UJZ A;  3U43 A;  7CEI A;  3GJN A;  1E0H A;  2NO8 A;  1GXH A;  4F37 A;  2JB0 A;  2JBG A;  5EW5 E;  2GZE A;  1BXI A;  1CEI A;  1FR2 A;  1MZ8 A;  1GXG A;  1EMV A;  2VLP A;  2GZF A;  4UHP B;  1UNK A;  3GKL C;  2GZG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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