2GZJA

Crystal structure of the e9 dnase domain with a mutant immunity protein im9 (d51a)
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
83
structure length
83
Chain Sequence
LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSALIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antibiotic/antibiotic inhibitor
source organism Escherichia coli k12
publication title Crystal Structure of the Complex of the Colicin E9 DNase Domain with a Mutant Immunity Protein, IM9 (D51A)
rcsb
molecule keywords Colicin-E9 immunity protein
total genus 29
structure length 83
sequence length 83
chains with identical sequence E
ec nomenclature
pdb deposition date 2006-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2gzjA00
1GXGA 2VLOA 5EW5E 1CEIA 1FR2A 2GZIA 1E0HA 2NO8A 2JAZA 1GXHA 2JB0A 1EMVA 3U43A 7CEIA 2GZFA 2ERHA 4F37A 1BXIA 2K5XA 3GKLC 1UJZA 1MZ8A 2WPTA 2GZJA 1IMPA 2K0DX 2GZEA 1ZNVA 1AYIA 2VLQA 4QKOA 2VLPA 3GJNA 1UNKA 1IMQA 2GYKA 2VLNA 4UHPB 2JBGA 2GZGA
chains in the Genus database with same CATH superfamily
2VLOA 1K73Q 5DCKA 2CGQA 3DS4A 4QNBA 2XT1A 2KW2A 4U0AA 1A8OA 1L0IA 4BPHA 3H0DA 2FADA 3LMOA 1VQLP 2JQ4A 4GR2A 4IPYA 3NY7B 2L22A 1VQ4P 5F2NA 2KGEA 3P05A 2E1MA 2M8LA 3I56P 2FVEA 2JB0A 3G0VA 2LIUA 2GZFA 2ERHA 5KP8B 1UJZA 3CCRP 2KOSA 2PY8A 2LTEA 5I4TG 2Z46A 2N50A 4U0EA 2KODA 3CD6P 3G71P 2JAZA 3B4QA 3Q20A 2L9FA 1RO2A 3G28A 5BS1A 1VQ7P 1ACPA 2KG8A 1KD1Q 4BPFA 2JU2A 4COCA 3LRYA 2OTLP 4U0DA 3CPWO 4XFZA 2MD9A 1YIJP 3CC7P 2EFJA 2KOPA 1KC8Q 4WYMA 4XFYA 3I55P 2QNWA 2N5IA 3RG6C 2K0DX 2GZEA 3OW2O 1VQPP 2EHSA 1A43A 3G21A 3B5IA 1FR2A 2EIAA 1QVGO 3M1MA 2FQ0A 2CG5B 1Z6MA 2JYGA 3MGEA 4GR6A 1M1KQ 2GDYA 2KR5A 2Z45A 1VQ9P 1L0HA 3H47A 2KOOA 2GYKA 2OARA 3CCQP 2ROQA 3CCSP 4UHPB 2AFDA 4HKGA 3CCUP 4COPA 2LMLA 2OTJP 2FHSC 1EIAA 2FVAA 4U0BA 2KGDA 2JYLA 2K93A 2FAEA 3DS2A 1OR5A 1VQ8P 1K30A 1HQBA 3G4SP 1T8KA 2KWLA 1QVFO 2PENA 1EMVA 3DS1A 3CCJP 1S72P 3CCVP 4XRQA 1M6NA 2WPTA 1VQNP 4BPGA 1ZNVA 2FQ2A 1Q81Q 1GPJA 2KGCA 4QKOA 2K92A 1KQSO 2MY5A 3G1IA 5HGLA 3GZLA 2GZGA 2XV6A 5EW5E 3CCEP 5HVCA 1YHQP 3E2DA 3WBHA 2P9XA 2BHVA 4F37A 1KLPA 1Q82Q 2K94A 2FACA 1D1DA 1VQ5P 5EJDA 2VLPA 1UNKA 4U0CA 2VLNA 5JPAA 2AFEA 1W2BO 1RNIA 1AF8A 2GDWA 4IZ6A 3RG2A 1VQMP 1M6EX 5HV8A 4M0IA 2VSQA 2PEMA 2JO0A 3EJEA 2GDXA 2AF8A 1YITP 1DNYA 1CEIA 2PEJA 4U0FA 2CQ8A 2LF4A 5HGMA 2GZIA 3G1GA 1F80D 2EG5A 4MRTC 4XFXA 1YJNP 3CC2P 2N98A 2N6YA 1IUQA 2PNGA 1VKUA 2GZJA 1IMPA 2X2BA 4R0MA 3GJNA 2MR8A 1Q7YQ 2FQ1A 2L0QA 2Z44A 4PH0A 3G26A 2KORA 3DS3A 3DS5A 1VHNA 1DV5A 2XZ1C 2JU1A 2PEQA 1K8AQ 1X3OA 1VQ6P 1YI2P 1N8RQ 2CNRA 2M8PA 1RO0A 2LL8A 2AVAA 5KP6B 3CCMP 5F2OA 2NO8A 1BAJA 3HZQA 2MR7A 2L4BA 2DNWA 1YJWP 1EOQA 3G29A 2KOQA 3CE7A 2MVVA 2KGAA 3CC4P 2PEIA 2M8NA 2LOLA 1M74A 1GXGA 3CMEP 2LPKA 5BS2A 1E0HA 5KP7B 1GXHA 2ONTA 7CEIA 3EJDA 2KG9A 2K5XA 3GKLC 4H2XC 5HGNA 1QRJA 3HYBA 4H2WC 4DG9A 3DS0A 1JJ2O 3GZMA 2BUOA 1ZMBA 2FVFA 2JBGA 1VQOP 2N5HA 3DPHA 4H2YC 3CXCO 5F2KA 2N6ZA 1HY8A 5HGOA 2CWOA 4PWVB 1BXIA 2L6EA 3EJBA 5CZDB 1E6JP 1IMQA 3CCLP 2LIWA 2PEKA 2XXMA 1K9MQ 3CMAP 3G6EP 4NEOA 4CA3A 3H4EA 1AYIA 2K2QA 1AUMA 2XZ0D 1NQ4A 2M5RA 4PH1A 1Q86Q 3NTEA 1M90Q 2LKIA 1NJIQ 3DTJA 3U43A 4XROA 3VRLC 2QEXP 2KG6A 2PEOA 2DGYA 2JGPA 2MF4A 1YJ9P 1MZ8A 2K0YA 2MVUA 1VQKP 4PXHB 2EHTA 2VLQA 2K0XA 2QA4P
chains in the Genus database with same CATH topology
1GXGA 2VLOA 5EW5E 1CEIA 1FR2A 2GZIA 1E0HA 2NO8A 2JAZA 1GXHA 2JB0A 1EMVA 3U43A 7CEIA 2GZFA 2ERHA 4F37A 1BXIA 2K5XA 3GKLC 1UJZA 1MZ8A 2WPTA 2GZJA 1IMPA 2K0DX 2GZEA 1ZNVA 1AYIA 2VLQA 4QKOA 2VLPA 3GJNA 1UNKA 1IMQA 2GYKA 2VLNA 4UHPB 2JBGA 2GZGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GXG A;  2VLO A;  5EW5 E;  1CEI A;  1FR2 A;  2GZI A;  1E0H A;  2NO8 A;  2JAZ A;  1GXH A;  2JB0 A;  1EMV A;  3U43 A;  7CEI A;  2GZF A;  2ERH A;  4F37 A;  1BXI A;  2K5X A;  3GKL C;  1UJZ A;  1MZ8 A;  2WPT A;  2GZJ A;  1IMP A;  2K0D X;  2GZE A;  1ZNV A;  1AYI A;  2VLQ A;  4QKO A;  2VLP A;  3GJN A;  1UNK A;  1IMQ A;  2GYK A;  2VLN A;  4UHP B;  2JBG A;  2GZG A; 
#chains in the Genus database with same CATH topology
 2VLO A;  1K73 Q;  5DCK A;  2CGQ A;  3DS4 A;  4QNB A;  2XT1 A;  2KW2 A;  4U0A A;  1A8O A;  1L0I A;  4BPH A;  3H0D A;  2FAD A;  3LMO A;  1VQL P;  2JQ4 A;  4GR2 A;  4IPY A;  3NY7 B;  2L22 A;  1VQ4 P;  5F2N A;  2KGE A;  3P05 A;  2E1M A;  2M8L A;  3I56 P;  2FVE A;  2JB0 A;  3G0V A;  2LIU A;  2GZF A;  2ERH A;  5KP8 B;  1UJZ A;  3CCR P;  2KOS A;  2PY8 A;  2LTE A;  5I4T G;  2Z46 A;  2N50 A;  4U0E A;  2KOD A;  3CD6 P;  3G71 P;  2JAZ A;  3B4Q A;  3Q20 A;  2L9F A;  1RO2 A;  3G28 A;  5BS1 A;  1VQ7 P;  1ACP A;  2KG8 A;  1KD1 Q;  4BPF A;  2JU2 A;  4COC A;  3LRY A;  2OTL P;  4U0D A;  3CPW O;  4XFZ A;  2MD9 A;  1YIJ P;  3CC7 P;  2EFJ A;  2KOP A;  1KC8 Q;  4WYM A;  4XFY A;  3I55 P;  2QNW A;  2N5I A;  3RG6 C;  2K0D X;  2GZE A;  3OW2 O;  1VQP P;  2EHS A;  1A43 A;  3G21 A;  3B5I A;  1FR2 A;  2EIA A;  1QVG O;  3M1M A;  2FQ0 A;  2CG5 B;  1Z6M A;  2JYG A;  3MGE A;  4GR6 A;  1M1K Q;  2GDY A;  2KR5 A;  2Z45 A;  1VQ9 P;  1L0H A;  3H47 A;  2KOO A;  2GYK A;  2OAR A;  3CCQ P;  2ROQ A;  3CCS P;  4UHP B;  2AFD A;  4HKG A;  3CCU P;  4COP A;  2LML A;  2OTJ P;  2FHS C;  1EIA A;  2FVA A;  4U0B A;  2KGD A;  2JYL A;  2K93 A;  2FAE A;  3DS2 A;  1OR5 A;  1VQ8 P;  1K30 A;  1HQB A;  3G4S P;  1T8K A;  2KWL A;  1QVF O;  2PEN A;  1EMV A;  3DS1 A;  3CCJ P;  1S72 P;  3CCV P;  4XRQ A;  1M6N A;  2WPT A;  1VQN P;  4BPG A;  1ZNV A;  2FQ2 A;  1Q81 Q;  1GPJ A;  2KGC A;  4QKO A;  2K92 A;  1KQS O;  2MY5 A;  3G1I A;  5HGL A;  3GZL A;  2GZG A;  2XV6 A;  5EW5 E;  3CCE P;  5HVC A;  1YHQ P;  3E2D A;  3WBH A;  2P9X A;  2BHV A;  4F37 A;  1KLP A;  1Q82 Q;  2K94 A;  2FAC A;  1D1D A;  1VQ5 P;  5EJD A;  2VLP A;  1UNK A;  4U0C A;  2VLN A;  5JPA A;  2AFE A;  1W2B O;  1RNI A;  1AF8 A;  2GDW A;  4IZ6 A;  3RG2 A;  1VQM P;  1M6E X;  5HV8 A;  4M0I A;  2VSQ A;  2PEM A;  2JO0 A;  3EJE A;  2GDX A;  2AF8 A;  1YIT P;  1DNY A;  1CEI A;  2PEJ A;  4U0F A;  2CQ8 A;  2LF4 A;  5HGM A;  2GZI A;  3G1G A;  1F80 D;  2EG5 A;  4MRT C;  4XFX A;  1YJN P;  3CC2 P;  2N98 A;  2N6Y A;  1IUQ A;  2PNG A;  1VKU A;  2GZJ A;  1IMP A;  2X2B A;  4R0M A;  3GJN A;  2MR8 A;  1Q7Y Q;  2FQ1 A;  2L0Q A;  2Z44 A;  4PH0 A;  3G26 A;  2KOR A;  3DS3 A;  3DS5 A;  1VHN A;  1DV5 A;  2XZ1 C;  2JU1 A;  2PEQ A;  1K8A Q;  1X3O A;  1VQ6 P;  1YI2 P;  1N8R Q;  2CNR A;  2M8P A;  1RO0 A;  2LL8 A;  2AVA A;  5KP6 B;  3CCM P;  5F2O A;  2NO8 A;  1BAJ A;  3HZQ A;  2MR7 A;  2L4B A;  2DNW A;  1YJW P;  1EOQ A;  3G29 A;  2KOQ A;  3CE7 A;  2MVV A;  2KGA A;  3CC4 P;  2PEI A;  2M8N A;  2LOL A;  1M74 A;  1GXG A;  3CME P;  2LPK A;  5BS2 A;  1E0H A;  5KP7 B;  1GXH A;  2ONT A;  7CEI A;  3EJD A;  2KG9 A;  2K5X A;  3GKL C;  4H2X C;  5HGN A;  1QRJ A;  3HYB A;  4H2W C;  4DG9 A;  3DS0 A;  1JJ2 O;  3GZM A;  2BUO A;  1ZMB A;  2FVF A;  2JBG A;  1VQO P;  2N5H A;  3DPH A;  4H2Y C;  3CXC O;  5F2K A;  2N6Z A;  1HY8 A;  5HGO A;  2CWO A;  4PWV B;  1BXI A;  2L6E A;  3EJB A;  5CZD B;  1E6J P;  1IMQ A;  3CCL P;  2LIW A;  2PEK A;  2XXM A;  1K9M Q;  3CMA P;  3G6E P;  4NEO A;  4CA3 A;  3H4E A;  1AYI A;  2K2Q A;  1AUM A;  2XZ0 D;  1NQ4 A;  2M5R A;  4PH1 A;  1Q86 Q;  3NTE A;  1M90 Q;  2LKI A;  1NJI Q;  3DTJ A;  3U43 A;  4XRO A;  3VRL C;  2QEX P;  2KG6 A;  2PEO A;  2DGY A;  2JGP A;  2MF4 A;  1YJ9 P;  1MZ8 A;  2K0Y A;  2MVU A;  1VQK P;  4PXH B;  2EHT A;  2VLQ A;  2K0X A;  2QA4 P; 
#chains in the Genus database with same CATH homology
 1GXG A;  2VLO A;  5EW5 E;  1CEI A;  1FR2 A;  2GZI A;  1E0H A;  2NO8 A;  2JAZ A;  1GXH A;  2JB0 A;  1EMV A;  3U43 A;  7CEI A;  2GZF A;  2ERH A;  4F37 A;  1BXI A;  2K5X A;  3GKL C;  1UJZ A;  1MZ8 A;  2WPT A;  2GZJ A;  1IMP A;  2K0D X;  2GZE A;  1ZNV A;  1AYI A;  2VLQ A;  4QKO A;  2VLP A;  3GJN A;  1UNK A;  1IMQ A;  2GYK A;  2VLN A;  4UHP B;  2JBG A;  2GZG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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