2JB0A

Crystal structure of the mutant h573a of the nuclease domain of cole7 in complex with im7
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
84
structure length
84
Chain Sequence
LKNSISDYTEAEFVQLLKEIEKENVAATDDVLDVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKPGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/inhibitor
source organism Escherichia coli
publication title The Conserved Asparagine in the Hnh Motif Serves an Important Structural Role in Metal Finger Endonucleases.
pubmed doi rcsb
molecule keywords COLICIN E7 IMMUNITY PROTEIN
total genus 28
structure length 84
sequence length 84
ec nomenclature ec 3.1.-.-:
pdb deposition date 2006-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2jb0A00
5EW5E 2WPTA 2JBGA 1E0HA 3U43A 1GXGA 4UHPB 1GXHA 3GKLC 1IMPA 1IMQA 3GJNA 2VLNA 2JAZA 2NO8A 1BXIA 2VLPA 4QKOA 2VLOA 2GYKA 1MZ8A 2GZEA 2ERHA 1UNKA 2GZIA 2VLQA 2JB0A 2K0DX 2GZFA 1UJZA 2GZGA 2GZJA 1AYIA 1FR2A 4F37A 1EMVA 2K5XA 7CEIA 1ZNVA 1CEIA
chains in the Genus database with same CATH superfamily
2JU1A 2LIUA 2PEQA 2JBGA 5BS2A 2OTLP 2N5IA 1OR5A 1M1KQ 4U0EA 2MR7A 3GJNA 5KP6B 2FHSC 2NO8A 1M6EX 1KC8Q 2PY8A 1ACPA 2KR5A 4U0CA 1DNYA 2GZIA 2MR8A 2FVAA 1Q81Q 1M74A 4M0IA 3CCVP 2KGEA 3GZLA 2AFDA 2JO0A 2JYLA 2MY5A 4H2XC 4DG9A 3DS2A 2VLPA 3EJBA 1MZ8A 4PWVB 5CZDB 3CMEP 2JB0A 2K0DX 1YHQP 1BAJA 1AYIA 1ZNVA 3CCLP 2MD9A 3H47A 3CE7A 3GKLC 2VLNA 1KLPA 4XROA 2QEXP 1VQNP 2FAEA 2LPKA 3G21A 2K0YA 3B5IA 2K5XA 3EJEA 4U0AA 2MF4A 2E1MA 2AVAA 2L6EA 1M6NA 2OARA 1W2BO 3P05A 2KW2A 2LL8A 2GZEA 3DPHA 3MGEA 2JGPA 3CMAP 3CCSP 2CG5B 1VQ5P 3CCMP 4QNBA 2JYGA 2LIWA 3G1GA 3RG2A 4H2YC 1VHNA 4HKGA 1BXIA 4XFYA 2KOOA 2XZ0D 2PNGA 1EOQA 1K8AQ 1UJZA 4H2WC 1KQSO 1S72P 1HQBA 1Q7YQ 5KP7B 1AUMA 2MVUA 1E0HA 3LMOA 1IMQA 2PENA 3CXCO 4GR6A 2KWLA 2LMLA 2VLQA 2GZFA 4R0MA 2GZGA 1QVFO 3CCQP 2L22A 3NTEA 5HGOA 2K94A 2L0QA 3G71P 3DS3A 2FVEA 2PEKA 2K2QA 1GXHA 5KP8B 1HY8A 2VLOA 5F2NA 2L9FA 4CA3A 3I56P 1K73Q 2KOQA 2AFEA 2Z46A 1E6JP 3G28A 4NEOA 3DS1A 1VQ6P 2XT1A 3H4EA 3H0DA 2CNRA 2MVVA 2N50A 1Z6MA 2KGCA 4MRTC 3HZQA 2N6YA 3CC2P 2QNWA 1IUQA 1L0IA 2PEMA 2GYKA 3CPWO 1K9MQ 1UNKA 2CGQA 2FVFA 2FQ2A 1QVGO 4PH1A 4WYMA 3GZMA 2KGDA 2M8PA 4COPA 1GPJA 2K0XA 1QRJA 1M90Q 2PEIA 1X3OA 1VQ7P 1VQKP 4COCA 2ROQA 2K92A 4IPYA 1Q86Q 2M5RA 1ZMBA 3CC4P 5JPAA 2GZJA 3CD6P 2OTJP 3RG6C 2DNWA 3U43A 5HGMA 3LRYA 2JU2A 2K93A 5BS1A 1NJIQ 2XV6A 2ERHA 2X2BA 2KOSA 1F80D 1YJWP 3G6EP 1YIJP 2WPTA 1DV5A 2BHVA 2EHTA 3G29A 2JAZA 2QA4P 1VQ4P 2N5HA 3EJDA 2KGAA 1D1DA 4XFXA 2CQ8A 2JQ4A 3WBHA 2VSQA 1EMVA 2Z45A 1YJ9P 1YJNP 1A8OA 2EFJA 2GDWA 5HGLA 5HVCA 3CC7P 3DTJA 2M8LA 2LOLA 3CCJP 1VKUA 4F37A 1N8RQ 2KOPA 1Q82Q 2FQ0A 2KG8A 2KODA 3DS0A 2XXMA 1L0HA 4U0DA 2KG9A 4GR2A 2ONTA 3CCEP 2KORA 3E2DA 3NY7B 2L4BA 3OW2O 5DCKA 2BUOA 2PEJA 2FADA 4IZ6A 2CWOA 2M8NA 1VQLP 3G1IA 1RO0A 1VQOP 2KG6A 1JJ2O 1AF8A 5EW5E 2LTEA 1NQ4A 2AF8A 1RO2A 3B4QA 1RNIA 3G26A 2Z44A 3G4SP 1EIAA 1YITP 2PEOA 2FQ1A 4XFZA 7CEIA 1CEIA 3G0VA 5F2KA 1VQPP 2EHSA 2XZ1C 3Q20A 5HGNA 2N6ZA 1GXGA 4UHPB 4PXHB 1IMPA 5HV8A 1VQ9P 4BPHA 2P9XA 4QKOA 4BPFA 1KD1Q 2FACA 4PH0A 4XRQA 3CCUP 5EJDA 1FR2A 1A43A 4BPGA 5I4TG 2GDXA 2DGYA 3I55P 2N98A 3M1MA 2EIAA 1VQMP 2EG5A 1YI2P 2LF4A 3DS5A 4U0FA 1T8KA 3CCRP 2GDYA 4U0BA 5F2OA 3VRLC 2LKIA 3HYBA 1VQ8P 1K30A 3DS4A
chains in the Genus database with same CATH topology
5EW5E 2WPTA 2JBGA 1E0HA 3U43A 1GXGA 4UHPB 1GXHA 3GKLC 1IMPA 1IMQA 3GJNA 2VLNA 2JAZA 2NO8A 1BXIA 2VLPA 4QKOA 2VLOA 2GYKA 1MZ8A 2GZEA 2ERHA 1UNKA 2GZIA 2VLQA 2JB0A 2K0DX 2GZFA 1UJZA 2GZGA 2GZJA 1AYIA 1FR2A 4F37A 1EMVA 2K5XA 7CEIA 1ZNVA 1CEIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EW5 E;  2WPT A;  2JBG A;  1E0H A;  3U43 A;  1GXG A;  4UHP B;  1GXH A;  3GKL C;  1IMP A;  1IMQ A;  3GJN A;  2VLN A;  2JAZ A;  2NO8 A;  1BXI A;  2VLP A;  4QKO A;  2VLO A;  2GYK A;  1MZ8 A;  2GZE A;  2ERH A;  1UNK A;  2GZI A;  2VLQ A;  2JB0 A;  2K0D X;  2GZF A;  1UJZ A;  2GZG A;  2GZJ A;  1AYI A;  1FR2 A;  4F37 A;  1EMV A;  2K5X A;  7CEI A;  1ZNV A;  1CEI A; 
#chains in the Genus database with same CATH topology
 2JU1 A;  2LIU A;  2PEQ A;  2JBG A;  5BS2 A;  2OTL P;  2N5I A;  1OR5 A;  1M1K Q;  4U0E A;  2MR7 A;  3GJN A;  5KP6 B;  2FHS C;  2NO8 A;  1M6E X;  1KC8 Q;  2PY8 A;  1ACP A;  2KR5 A;  4U0C A;  1DNY A;  2GZI A;  2MR8 A;  2FVA A;  1Q81 Q;  1M74 A;  4M0I A;  3CCV P;  2KGE A;  3GZL A;  2AFD A;  2JO0 A;  2JYL A;  2MY5 A;  4H2X C;  4DG9 A;  3DS2 A;  2VLP A;  3EJB A;  1MZ8 A;  4PWV B;  5CZD B;  3CME P;  2JB0 A;  2K0D X;  1YHQ P;  1BAJ A;  1AYI A;  1ZNV A;  3CCL P;  2MD9 A;  3H47 A;  3CE7 A;  3GKL C;  2VLN A;  1KLP A;  4XRO A;  2QEX P;  1VQN P;  2FAE A;  2LPK A;  3G21 A;  2K0Y A;  3B5I A;  2K5X A;  3EJE A;  4U0A A;  2MF4 A;  2E1M A;  2AVA A;  2L6E A;  1M6N A;  2OAR A;  1W2B O;  3P05 A;  2KW2 A;  2LL8 A;  2GZE A;  3DPH A;  3MGE A;  2JGP A;  3CMA P;  3CCS P;  2CG5 B;  1VQ5 P;  3CCM P;  4QNB A;  2JYG A;  2LIW A;  3G1G A;  3RG2 A;  4H2Y C;  1VHN A;  4HKG A;  1BXI A;  4XFY A;  2KOO A;  2XZ0 D;  2PNG A;  1EOQ A;  1K8A Q;  1UJZ A;  4H2W C;  1KQS O;  1S72 P;  1HQB A;  1Q7Y Q;  5KP7 B;  1AUM A;  2MVU A;  1E0H A;  3LMO A;  1IMQ A;  2PEN A;  3CXC O;  4GR6 A;  2KWL A;  2LML A;  2VLQ A;  2GZF A;  4R0M A;  2GZG A;  1QVF O;  3CCQ P;  2L22 A;  3NTE A;  5HGO A;  2K94 A;  2L0Q A;  3G71 P;  3DS3 A;  2FVE A;  2PEK A;  2K2Q A;  1GXH A;  5KP8 B;  1HY8 A;  2VLO A;  5F2N A;  2L9F A;  4CA3 A;  3I56 P;  1K73 Q;  2KOQ A;  2AFE A;  2Z46 A;  1E6J P;  3G28 A;  4NEO A;  3DS1 A;  1VQ6 P;  2XT1 A;  3H4E A;  3H0D A;  2CNR A;  2MVV A;  2N50 A;  1Z6M A;  2KGC A;  4MRT C;  3HZQ A;  2N6Y A;  3CC2 P;  2QNW A;  1IUQ A;  1L0I A;  2PEM A;  2GYK A;  3CPW O;  1K9M Q;  1UNK A;  2CGQ A;  2FVF A;  2FQ2 A;  1QVG O;  4PH1 A;  4WYM A;  3GZM A;  2KGD A;  2M8P A;  4COP A;  1GPJ A;  2K0X A;  1QRJ A;  1M90 Q;  2PEI A;  1X3O A;  1VQ7 P;  1VQK P;  4COC A;  2ROQ A;  2K92 A;  4IPY A;  1Q86 Q;  2M5R A;  1ZMB A;  3CC4 P;  5JPA A;  2GZJ A;  3CD6 P;  2OTJ P;  3RG6 C;  2DNW A;  3U43 A;  5HGM A;  3LRY A;  2JU2 A;  2K93 A;  5BS1 A;  1NJI Q;  2XV6 A;  2ERH A;  2X2B A;  2KOS A;  1F80 D;  1YJW P;  3G6E P;  1YIJ P;  2WPT A;  1DV5 A;  2BHV A;  2EHT A;  3G29 A;  2JAZ A;  2QA4 P;  1VQ4 P;  2N5H A;  3EJD A;  2KGA A;  1D1D A;  4XFX A;  2CQ8 A;  2JQ4 A;  3WBH A;  2VSQ A;  1EMV A;  2Z45 A;  1YJ9 P;  1YJN P;  1A8O A;  2EFJ A;  2GDW A;  5HGL A;  5HVC A;  3CC7 P;  3DTJ A;  2M8L A;  2LOL A;  3CCJ P;  1VKU A;  4F37 A;  1N8R Q;  2KOP A;  1Q82 Q;  2FQ0 A;  2KG8 A;  2KOD A;  3DS0 A;  2XXM A;  1L0H A;  4U0D A;  2KG9 A;  4GR2 A;  2ONT A;  3CCE P;  2KOR A;  3E2D A;  3NY7 B;  2L4B A;  3OW2 O;  5DCK A;  2BUO A;  2PEJ A;  2FAD A;  4IZ6 A;  2CWO A;  2M8N A;  1VQL P;  3G1I A;  1RO0 A;  1VQO P;  2KG6 A;  1JJ2 O;  1AF8 A;  5EW5 E;  2LTE A;  1NQ4 A;  2AF8 A;  1RO2 A;  3B4Q A;  1RNI A;  3G26 A;  2Z44 A;  3G4S P;  1EIA A;  1YIT P;  2PEO A;  2FQ1 A;  4XFZ A;  7CEI A;  1CEI A;  3G0V A;  5F2K A;  1VQP P;  2EHS A;  2XZ1 C;  3Q20 A;  5HGN A;  2N6Z A;  1GXG A;  4UHP B;  4PXH B;  1IMP A;  5HV8 A;  1VQ9 P;  4BPH A;  2P9X A;  4QKO A;  4BPF A;  1KD1 Q;  2FAC A;  4PH0 A;  4XRQ A;  3CCU P;  5EJD A;  1FR2 A;  1A43 A;  4BPG A;  5I4T G;  2GDX A;  2DGY A;  3I55 P;  2N98 A;  3M1M A;  2EIA A;  1VQM P;  2EG5 A;  1YI2 P;  2LF4 A;  3DS5 A;  4U0F A;  1T8K A;  3CCR P;  2GDY A;  4U0B A;  5F2O A;  3VRL C;  2LKI A;  3HYB A;  1VQ8 P;  1K30 A;  3DS4 A; 
#chains in the Genus database with same CATH homology
 5EW5 E;  2WPT A;  2JBG A;  1E0H A;  3U43 A;  1GXG A;  4UHP B;  1GXH A;  3GKL C;  1IMP A;  1IMQ A;  3GJN A;  2VLN A;  2JAZ A;  2NO8 A;  1BXI A;  2VLP A;  4QKO A;  2VLO A;  2GYK A;  1MZ8 A;  2GZE A;  2ERH A;  1UNK A;  2GZI A;  2VLQ A;  2JB0 A;  2K0D X;  2GZF A;  1UJZ A;  2GZG A;  2GZJ A;  1AYI A;  1FR2 A;  4F37 A;  1EMV A;  2K5X A;  7CEI A;  1ZNV A;  1CEI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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