2KGCA

Nmr solution structures of octanoyl acp (a non-natural intermediate) from the actinorhodin polyketide synthase in streptomyces coelicolor
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
86
structure length
86
Chain Sequence
MATLLTTDDLRRALVESAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALAEAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Biosynthetic protein
molecule keywords Actinorhodin polyketide synthase acyl carrier protein
publication title Probing the Interactions of Early Polyketide Intermediates with the Actinorhodin ACP from S. coelicolor A3(2).
pubmed doi rcsb
source organism Streptomyces coelicolor
total genus 21
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2009-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 2kgcA00
2K94A 2KR5A 5KP7B 1DNYA 2L9FA 2LOLA 2LTEA 3CE7A 4HKGA 2FVAA 1HQBA 2GDXA 2KGEA 2FHSC 3GZLA 2JU1A 1KLPA 2FACA 2JU2A 4H2XC 1X3OA 2FVEA 2MVUA 5KP6B 1F80D 2AVAA 2JGPA 1AF8A 1HY8A 3EJDA 2CG5B 4IZ6A 2KG8A 2EHTA 2KOPA 3EJEA 1NQ4A 3NY7B 4H2WC 3EJBA 2XZ1C 5EJDA 2N5HA 2N6YA 4PWVB 4BPGA 2KWLA 2MD9A 2XZ0D 2N50A 2KOSA 2MVVA 2EHSA 3LMOA 2LL8A 2JQ4A 4BPFA 5HV8A 2N5IA 2MR7A 2KW2A 2L4BA 2KG9A 2FAEA 2N98A 2CQ8A 2L22A 2M5RA 2LIWA 2KOQA 2LPKA 2K93A 2DNWA 2FADA 1DV5A 2K0XA 4NEOA 4PXHB 2KG6A 2GDWA 1L0IA 1OR5A 2KGAA 2LKIA 2MR8A 5KP8B 1L0HA 2AFEA 2CGQA 1ACPA 2AFDA 3RG2A 2FQ2A 2K2QA 2LIUA 2KGCA 2FQ0A 2LMLA 2KOOA 2KGDA 4R0MA 2MF4A 2K0YA 1T8KA 2FVFA 5HVCA 2N6ZA 4CA3A 4H2YC 4DG9A 2AF8A 2X2BA 2KORA 2VSQA 2QNWA 2K92A 2MY5A 2PNGA 4BPHA 2GDYA 2ROQA 1VKUA 2FQ1A 2CNRA 2L0QA 4MRTC 3GZMA 5CZDB
chains in the Genus database with same CATH superfamily
2JAZA 5KP7B 1E6JP 2L9FA 3H0DA 4HKGA 3GJNA 4M0IA 1VQMP 3CC7P 5HGLA 1Z6MA 2JU1A 1VQKP 1KLPA 2EFJA 4F37A 1BAJA 2JU2A 1X3OA 3RG6C 3G1GA 2AVAA 1CEIA 4U0FA 2KG8A 2EHTA 1A8OA 1D1DA 2GZIA 2XZ1C 2N5HA 5EJDA 1EMVA 2N6YA 1JJ2O 3CCVP 2E1MA 2XZ0D 3LRYA 2KOSA 1QRJA 2EHSA 3LMOA 4BPFA 4WYMA 5HV8A 1VQOP 3DPHA 1Q81Q 3CCEP 3HZQA 2LPKA 2K93A 3H47A 3CCJP 1DV5A 2GDWA 1OR5A 2LKIA 3CC2P 2AFDA 2K2QA 2VLOA 2KOOA 2GZEA 5JPAA 4R0MA 2PEJA 2PEIA 2FVFA 2N6ZA 3DS2A 4XROA 1YIJP 2AF8A 3CPWO 4PH0A 4U0EA 1KD1Q 3CCRP 2CNRA 2L0QA 2VLQA 2OTLP 1VQ9P 5F2KA 2OARA 2JYLA 3CD6P 2KR5A 3Q20A 2PY8A 4COPA 2Z45A 3CE7A 1VQPP 2JB0A 4QKOA 2GZFA 2EIAA 2PENA 1K30A 1UNKA 4XRQA 4H2XC 2FVEA 1RNIA 3I55P 5HGMA 1QVFO 1GXHA 1K8AQ 1AF8A 5BS1A 3EJDA 4IZ6A 3G21A 4H2WC 5I4TG 4PWVB 4U0BA 4BPGA 2KWLA 1YHQP 2N50A 2MVVA 7CEIA 1VQ4P 2L4BA 1ZNVA 3GKLC 2CQ8A 1Q82Q 2M5RA 2WPTA 2KODA 1A43A 1VQ7P 3CCLP 3CCSP 2FADA 2XXMA 4NEOA 4PXHB 2NO8A 3CMEP 3G71P 2DGYA 5KP8B 2MR8A 3CMAP 3M1MA 3G0VA 2PEOA 2KGCA 3MGEA 1N8RQ 1T8KA 5DCKA 5HVCA 2Z44A 4PH1A 4H2YC 1VHNA 4DG9A 2X2BA 3NTEA 1BXIA 2QNWA 4GR2A 2GDYA 1VKUA 2FQ1A 2JBGA 4IPYA 3CCQP 1IMPA 1GPJA 3GZMA 3CCMP 4GR6A 2CWOA 2ONTA 1YITP 1AYIA 2GYKA 2XV6A 3DS0A 1AUMA 2LOLA 1VQLP 1HQBA 1VQNP 2M8LA 2ERHA 2FHSC 3GZLA 2FACA 4QNBA 2MVUA 4UHPB 4XFZA 5KP6B 1HY8A 3P05A 2PEKA 3EJBA 4XFXA 2OTJP 5F2OA 2M8PA 2JO0A 1Q86Q 1FR2A 5HGOA 2PEMA 2M8NA 1W2BO 2N5IA 2GZGA 1S72P 1VQ5P 1YI2P 2VLPA 2KG9A 2FAEA 2N98A 2LIWA 3DS4A 2L6EA 2DNWA 1M6NA 2K0XA 4COCA 3H4EA 1L0HA 2AFEA 3RG2A 1MZ8A 1YJNP 2P9XA 2LIUA 1E0HA 2FQ0A 3G4SP 5HGNA 2K0YA 2MF4A 1Q7YQ 2Z46A 2BUOA 2EG5A 2VSQA 1NJIQ 2K92A 2PNGA 1IMQA 2K5XA 4BPHA 3CCUP 1QVGO 1UJZA 2VLNA 4MRTC 1KC8Q 1M6EX 4U0AA 1M90Q 2QEXP 1GXGA 2K94A 1DNYA 3I56P 3DS5A 3B4QA 2LTEA 2QA4P 2FVAA 2GDXA 2KGEA 1YJWP 3HYBA 3DS3A 2GZJA 3DTJA 4U0CA 2BHVA 3G1IA 1F80D 3G28A 2JGPA 2CG5B 2KOPA 3EJEA 1NQ4A 1RO0A 3NY7B 3OW2O 5F2NA 1K73Q 4U0DA 4XFYA 2PEQA 2MD9A 3U43A 2LL8A 2JQ4A 1EOQA 1VQ6P 2MR7A 1YJ9P 3DS1A 2KW2A 2K0DX 2L22A 1KQSO 2KOQA 3CC4P 1M1KQ 3G26A 2KG6A 1L0IA 2KGAA 1ACPA 2CGQA 2FQ2A 1VQ8P 1M74A 2LMLA 2KGDA 3VRLC 1IUQA 1RO2A 4CA3A 1ZMBA 5BS2A 2KORA 2XT1A 3CXCO 2JYGA 2MY5A 1K9MQ 2ROQA 3WBHA 3B5IA 5EW5E 2LF4A 3G29A 3G6EP 1EIAA 5CZDB 3E2DA
chains in the Genus database with same CATH topology
2K94A 2KR5A 5KP7B 1DNYA 2L9FA 2LOLA 2LTEA 3CE7A 4HKGA 2FVAA 1HQBA 2GDXA 2KGEA 2FHSC 3GZLA 2JU1A 1KLPA 2FACA 2JU2A 4H2XC 1X3OA 2FVEA 2MVUA 5KP6B 1F80D 2AVAA 2JGPA 1AF8A 1HY8A 3EJDA 2CG5B 4IZ6A 2KG8A 2EHTA 2KOPA 3EJEA 1NQ4A 3NY7B 4H2WC 3EJBA 2XZ1C 5EJDA 2N5HA 2N6YA 4PWVB 4BPGA 2KWLA 2MD9A 2XZ0D 2N50A 2KOSA 2MVVA 2EHSA 3LMOA 2LL8A 2JQ4A 4BPFA 5HV8A 2N5IA 2MR7A 2KW2A 2L4BA 2KG9A 2FAEA 2N98A 2CQ8A 2L22A 2M5RA 2LIWA 2KOQA 2LPKA 2K93A 2DNWA 2FADA 1DV5A 2K0XA 4NEOA 4PXHB 2KG6A 2GDWA 1L0IA 1OR5A 2KGAA 2LKIA 2MR8A 5KP8B 1L0HA 2AFEA 2CGQA 1ACPA 2AFDA 3RG2A 2FQ2A 2K2QA 2LIUA 2KGCA 2FQ0A 2LMLA 2KOOA 2KGDA 4R0MA 2MF4A 2K0YA 1T8KA 2FVFA 5HVCA 2N6ZA 4CA3A 4H2YC 4DG9A 2AF8A 2X2BA 2KORA 2VSQA 2QNWA 2K92A 2MY5A 2PNGA 4BPHA 2GDYA 2ROQA 1VKUA 2FQ1A 2CNRA 2L0QA 4MRTC 3GZMA 5CZDB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K94 A;  2KR5 A;  5KP7 B;  1DNY A;  2L9F A;  2LOL A;  2LTE A;  3CE7 A;  4HKG A;  2FVA A;  1HQB A;  2GDX A;  2KGE A;  2FHS C;  3GZL A;  2JU1 A;  1KLP A;  2FAC A;  2JU2 A;  4H2X C;  1X3O A;  2FVE A;  2MVU A;  5KP6 B;  1F80 D;  2AVA A;  2JGP A;  1AF8 A;  1HY8 A;  3EJD A;  2CG5 B;  4IZ6 A;  2KG8 A;  2EHT A;  2KOP A;  3EJE A;  1NQ4 A;  3NY7 B;  4H2W C;  3EJB A;  2XZ1 C;  5EJD A;  2N5H A;  2N6Y A;  4PWV B;  4BPG A;  2KWL A;  2MD9 A;  2XZ0 D;  2N50 A;  2KOS A;  2MVV A;  2EHS A;  3LMO A;  2LL8 A;  2JQ4 A;  4BPF A;  5HV8 A;  2N5I A;  2MR7 A;  2KW2 A;  2L4B A;  2KG9 A;  2FAE A;  2N98 A;  2CQ8 A;  2L22 A;  2M5R A;  2LIW A;  2KOQ A;  2LPK A;  2K93 A;  2DNW A;  2FAD A;  1DV5 A;  2K0X A;  4NEO A;  4PXH B;  2KG6 A;  2GDW A;  1L0I A;  1OR5 A;  2KGA A;  2LKI A;  2MR8 A;  5KP8 B;  1L0H A;  2AFE A;  2CGQ A;  1ACP A;  2AFD A;  3RG2 A;  2FQ2 A;  2K2Q A;  2LIU A;  2KGC A;  2FQ0 A;  2LML A;  2KOO A;  2KGD A;  4R0M A;  2MF4 A;  2K0Y A;  1T8K A;  2FVF A;  5HVC A;  2N6Z A;  4CA3 A;  4H2Y C;  4DG9 A;  2AF8 A;  2X2B A;  2KOR A;  2VSQ A;  2QNW A;  2K92 A;  2MY5 A;  2PNG A;  4BPH A;  2GDY A;  2ROQ A;  1VKU A;  2FQ1 A;  2CNR A;  2L0Q A;  4MRT C;  3GZM A;  5CZD B; 
#chains in the Genus database with same CATH topology
 2JAZ A;  5KP7 B;  1E6J P;  2L9F A;  3H0D A;  4HKG A;  3GJN A;  4M0I A;  1VQM P;  3CC7 P;  5HGL A;  1Z6M A;  2JU1 A;  1VQK P;  1KLP A;  2EFJ A;  4F37 A;  1BAJ A;  2JU2 A;  1X3O A;  3RG6 C;  3G1G A;  2AVA A;  1CEI A;  4U0F A;  2KG8 A;  2EHT A;  1A8O A;  1D1D A;  2GZI A;  2XZ1 C;  2N5H A;  5EJD A;  1EMV A;  2N6Y A;  1JJ2 O;  3CCV P;  2E1M A;  2XZ0 D;  3LRY A;  2KOS A;  1QRJ A;  2EHS A;  3LMO A;  4BPF A;  4WYM A;  5HV8 A;  1VQO P;  3DPH A;  1Q81 Q;  3CCE P;  3HZQ A;  2LPK A;  2K93 A;  3H47 A;  3CCJ P;  1DV5 A;  2GDW A;  1OR5 A;  2LKI A;  3CC2 P;  2AFD A;  2K2Q A;  2VLO A;  2KOO A;  2GZE A;  5JPA A;  4R0M A;  2PEJ A;  2PEI A;  2FVF A;  2N6Z A;  3DS2 A;  4XRO A;  1YIJ P;  2AF8 A;  3CPW O;  4PH0 A;  4U0E A;  1KD1 Q;  3CCR P;  2CNR A;  2L0Q A;  2VLQ A;  2OTL P;  1VQ9 P;  5F2K A;  2OAR A;  2JYL A;  3CD6 P;  2KR5 A;  3Q20 A;  2PY8 A;  4COP A;  2Z45 A;  3CE7 A;  1VQP P;  2JB0 A;  4QKO A;  2GZF A;  2EIA A;  2PEN A;  1K30 A;  1UNK A;  4XRQ A;  4H2X C;  2FVE A;  1RNI A;  3I55 P;  5HGM A;  1QVF O;  1GXH A;  1K8A Q;  1AF8 A;  5BS1 A;  3EJD A;  4IZ6 A;  3G21 A;  4H2W C;  5I4T G;  4PWV B;  4U0B A;  4BPG A;  2KWL A;  1YHQ P;  2N50 A;  2MVV A;  7CEI A;  1VQ4 P;  2L4B A;  1ZNV A;  3GKL C;  2CQ8 A;  1Q82 Q;  2M5R A;  2WPT A;  2KOD A;  1A43 A;  1VQ7 P;  3CCL P;  3CCS P;  2FAD A;  2XXM A;  4NEO A;  4PXH B;  2NO8 A;  3CME P;  3G71 P;  2DGY A;  5KP8 B;  2MR8 A;  3CMA P;  3M1M A;  3G0V A;  2PEO A;  2KGC A;  3MGE A;  1N8R Q;  1T8K A;  5DCK A;  5HVC A;  2Z44 A;  4PH1 A;  4H2Y C;  1VHN A;  4DG9 A;  2X2B A;  3NTE A;  1BXI A;  2QNW A;  4GR2 A;  2GDY A;  1VKU A;  2FQ1 A;  2JBG A;  4IPY A;  3CCQ P;  1IMP A;  1GPJ A;  3GZM A;  3CCM P;  4GR6 A;  2CWO A;  2ONT A;  1YIT P;  1AYI A;  2GYK A;  2XV6 A;  3DS0 A;  1AUM A;  2LOL A;  1VQL P;  1HQB A;  1VQN P;  2M8L A;  2ERH A;  2FHS C;  3GZL A;  2FAC A;  4QNB A;  2MVU A;  4UHP B;  4XFZ A;  5KP6 B;  1HY8 A;  3P05 A;  2PEK A;  3EJB A;  4XFX A;  2OTJ P;  5F2O A;  2M8P A;  2JO0 A;  1Q86 Q;  1FR2 A;  5HGO A;  2PEM A;  2M8N A;  1W2B O;  2N5I A;  2GZG A;  1S72 P;  1VQ5 P;  1YI2 P;  2VLP A;  2KG9 A;  2FAE A;  2N98 A;  2LIW A;  3DS4 A;  2L6E A;  2DNW A;  1M6N A;  2K0X A;  4COC A;  3H4E A;  1L0H A;  2AFE A;  3RG2 A;  1MZ8 A;  1YJN P;  2P9X A;  2LIU A;  1E0H A;  2FQ0 A;  3G4S P;  5HGN A;  2K0Y A;  2MF4 A;  1Q7Y Q;  2Z46 A;  2BUO A;  2EG5 A;  2VSQ A;  1NJI Q;  2K92 A;  2PNG A;  1IMQ A;  2K5X A;  4BPH A;  3CCU P;  1QVG O;  1UJZ A;  2VLN A;  4MRT C;  1KC8 Q;  1M6E X;  4U0A A;  1M90 Q;  2QEX P;  1GXG A;  2K94 A;  1DNY A;  3I56 P;  3DS5 A;  3B4Q A;  2LTE A;  2QA4 P;  2FVA A;  2GDX A;  2KGE A;  1YJW P;  3HYB A;  3DS3 A;  2GZJ A;  3DTJ A;  4U0C A;  2BHV A;  3G1I A;  1F80 D;  3G28 A;  2JGP A;  2CG5 B;  2KOP A;  3EJE A;  1NQ4 A;  1RO0 A;  3NY7 B;  3OW2 O;  5F2N A;  1K73 Q;  4U0D A;  4XFY A;  2PEQ A;  2MD9 A;  3U43 A;  2LL8 A;  2JQ4 A;  1EOQ A;  1VQ6 P;  2MR7 A;  1YJ9 P;  3DS1 A;  2KW2 A;  2K0D X;  2L22 A;  1KQS O;  2KOQ A;  3CC4 P;  1M1K Q;  3G26 A;  2KG6 A;  1L0I A;  2KGA A;  1ACP A;  2CGQ A;  2FQ2 A;  1VQ8 P;  1M74 A;  2LML A;  2KGD A;  3VRL C;  1IUQ A;  1RO2 A;  4CA3 A;  1ZMB A;  5BS2 A;  2KOR A;  2XT1 A;  3CXC O;  2JYG A;  2MY5 A;  1K9M Q;  2ROQ A;  3WBH A;  3B5I A;  5EW5 E;  2LF4 A;  3G29 A;  3G6E P;  1EIA A;  5CZD B;  3E2D A; 
#chains in the Genus database with same CATH homology
 2K94 A;  2KR5 A;  5KP7 B;  1DNY A;  2L9F A;  2LOL A;  2LTE A;  3CE7 A;  4HKG A;  2FVA A;  1HQB A;  2GDX A;  2KGE A;  2FHS C;  3GZL A;  2JU1 A;  1KLP A;  2FAC A;  2JU2 A;  4H2X C;  1X3O A;  2FVE A;  2MVU A;  5KP6 B;  1F80 D;  2AVA A;  2JGP A;  1AF8 A;  1HY8 A;  3EJD A;  2CG5 B;  4IZ6 A;  2KG8 A;  2EHT A;  2KOP A;  3EJE A;  1NQ4 A;  3NY7 B;  4H2W C;  3EJB A;  2XZ1 C;  5EJD A;  2N5H A;  2N6Y A;  4PWV B;  4BPG A;  2KWL A;  2MD9 A;  2XZ0 D;  2N50 A;  2KOS A;  2MVV A;  2EHS A;  3LMO A;  2LL8 A;  2JQ4 A;  4BPF A;  5HV8 A;  2N5I A;  2MR7 A;  2KW2 A;  2L4B A;  2KG9 A;  2FAE A;  2N98 A;  2CQ8 A;  2L22 A;  2M5R A;  2LIW A;  2KOQ A;  2LPK A;  2K93 A;  2DNW A;  2FAD A;  1DV5 A;  2K0X A;  4NEO A;  4PXH B;  2KG6 A;  2GDW A;  1L0I A;  1OR5 A;  2KGA A;  2LKI A;  2MR8 A;  5KP8 B;  1L0H A;  2AFE A;  2CGQ A;  1ACP A;  2AFD A;  3RG2 A;  2FQ2 A;  2K2Q A;  2LIU A;  2KGC A;  2FQ0 A;  2LML A;  2KOO A;  2KGD A;  4R0M A;  2MF4 A;  2K0Y A;  1T8K A;  2FVF A;  5HVC A;  2N6Z A;  4CA3 A;  4H2Y C;  4DG9 A;  2AF8 A;  2X2B A;  2KOR A;  2VSQ A;  2QNW A;  2K92 A;  2MY5 A;  2PNG A;  4BPH A;  2GDY A;  2ROQ A;  1VKU A;  2FQ1 A;  2CNR A;  2L0Q A;  4MRT C;  3GZM A;  5CZD B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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