1DV5A

Tertiary structure of apo-d-alanyl carrier protein
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
80
structure length
80
Chain Sequence
ADEAIKNGVLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQAQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
source organism Lactobacillus casei
publication title Biosynthesis of D-alanyl-lipoteichoic acid: the tertiary structure of apo-D-alanyl carrier protein.
pubmed doi rcsb
molecule keywords APO-D-ALANYL CARRIER PROTEIN
total genus 17
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2000-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 1dv5A00
2JU2A 2AFEA 2N98A 5KP8B 1HQBA 2EHSA 1ACPA 2KOPA 2L9FA 2XZ1C 1OR5A 2ROQA 2AFDA 1VKUA 4PXHB 2KOOA 1F80D 5CZDB 2K93A 2FVFA 2EHTA 2M5RA 2FACA 2CQ8A 4R0MA 2K2QA 2LIUA 2KG6A 1NQ4A 2JU1A 2K0XA 2GDYA 4H2WC 1L0HA 2KORA 2KWLA 2L22A 5KP6B 2MF4A 2AF8A 2LTEA 2MVVA 4MRTC 5HVCA 2MY5A 4CA3A 4BPGA 2VSQA 5HV8A 2LOLA 2MR7A 2FHSC 2K92A 2XZ0D 3RG2A 2KGAA 2FQ0A 1HY8A 2X2BA 4H2XC 4H2YC 3EJDA 2KGEA 3EJBA 2KG8A 2LIWA 2LMLA 3CE7A 2DNWA 3GZLA 1X3OA 2JQ4A 2CG5B 2KW2A 5EJDA 2MVUA 2FVEA 2JGPA 4NEOA 2CNRA 2QNWA 2N5IA 2K94A 4BPFA 2LL8A 2N5HA 1DNYA 2CGQA 2FQ2A 3GZMA 2MD9A 1L0IA 2LKIA 2PNGA 2GDWA 5KP7B 2GDXA 3LMOA 1T8KA 2KGDA 4HKGA 4IZ6A 2K0YA 2AVAA 2N6ZA 2FQ1A 2KR5A 2N6YA 2KG9A 3NY7B 2L4BA 2LPKA 4BPHA 2FVAA 2FAEA 1AF8A 2FADA 2MR8A 2N50A 4DG9A 3EJEA 2L0QA 4PWVB 1DV5A 2KOSA 2KGCA 1KLPA 2KOQA
chains in the Genus database with same CATH superfamily
2JYGA 2AFEA 1AYIA 1MZ8A 5BS1A 3GKLC 1VQ8P 2L9FA 2XZ1C 4U0FA 3I55P 3CCEP 1OR5A 2PEQA 2PEJA 3G0VA 2K93A 1ZNVA 2XV6A 1RNIA 1VQOP 1Q81Q 3RG6C 1Q86Q 2K2QA 1VQ9P 3H4EA 1NQ4A 2JU1A 2K0XA 2PY8A 2KORA 2L22A 1D1DA 3CPWO 3CD6P 2AF8A 2QA4P 2MVVA 4COPA 1Z6MA 3P05A 5HGOA 2MY5A 4CA3A 3M1MA 5F2KA 1RO2A 1Q7YQ 3MGEA 2GZJA 2MR7A 2JO0A 2K92A 3RG2A 2OTLP 1M6EX 2JYLA 3DS2A 2X2BA 2EIAA 1EMVA 1BAJA 2GYKA 3CC7P 3GZLA 1X3OA 2PEMA 1KQSO 3CXCO 3DPHA 4NEOA 1QVFO 2QNWA 2WPTA 3WBHA 3CCVP 1ZMBA 1A8OA 2CGQA 3GZMA 1VQLP 3LMOA 2AVAA 5I4TG 2N6YA 1VQ4P 2KG9A 2JBGA 4PH1A 2K5XA 3B4QA 2FAEA 2CWOA 2N50A 4COCA 7CEIA 2L0QA 2OTJP 1K9MQ 2GZGA 1BXIA 1VQMP 3U43A 2KOQA 2PEKA 1VKUA 4PH0A 4XFXA 5CZDB 1QVGO 2FVFA 2M5RA 2FACA 2K0DX 2PEIA 3CC4P 2GZIA 1K8AQ 1Q82Q 2Z45A 2KG6A 5EW5E 3CC2P 3G1GA 3CCLP 2KWLA 1AUMA 5KP6B 1KD1Q 4F37A 2FHSC 2FQ0A 1EIAA 1HY8A 4H2YC 3EJDA 2LMLA 3CE7A 1UNKA 2GZEA 2DNWA 2JQ4A 1M6NA 5EJDA 1UJZA 2MVUA 3CCJP 3GJNA 2JB0A 1DNYA 5F2OA 5JPAA 2VLPA 4U0DA 1GXGA 1RO0A 2LKIA 3G1IA 2PNGA 2GDWA 5KP7B 4HKGA 2KGDA 2DGYA 3I56P 2N6ZA 2FQ1A 5F2NA 2Z44A 1CEIA 2L4BA 2LPKA 4BPHA 1YJWP 1AF8A 4U0BA 1VQPP 1VQ5P 4DG9A 3EJEA 1KLPA 3CCQP 1HQBA 2EHSA 1M74A 1ACPA 2KOPA 1IMPA 4XFYA 2ROQA 1VQKP 5HGMA 1GPJA 1M1KQ 2EHTA 2CQ8A 2KODA 2LIUA 2VLQA 1QRJA 1M90Q 3G26A 3G28A 2GDYA 2L6EA 1VQNP 1L0HA 3E2DA 3G4SP 2M8LA 1IUQA 2LTEA 4IPYA 5BS2A 3CMEP 4MRTC 5HVCA 4BPGA 4M0IA 3CCRP 4GR6A 1VQ6P 2XZ0D 1N8RQ 3DTJA 2M8NA 3OW2O 4H2XC 3CCUP 1VHNA 2KGEA 2KG8A 4XRQA 2LIWA 3DS4A 2E1MA 2GZFA 2CG5B 2KW2A 3DS5A 1JJ2O 3DS0A 2JGPA 2CNRA 2XT1A 2K94A 4WYMA 2LL8A 2FQ2A 1L0IA 2MD9A 3DS1A 3LRYA 2GDXA 2K0YA 2Z46A 2KR5A 3H0DA 3NY7B 3G29A 2ERHA 2FVAA 1GXHA 2OARA 2XXMA 2VLNA 2FADA 1DV5A 2PENA 2M8PA 2KGCA 2JU2A 2N98A 5KP8B 1YJNP 3G6EP 2ONTA 1E0HA 2EFJA 4XFZA 4U0CA 3NTEA 1K30A 1NJIQ 2AFDA 4PXHB 2KOOA 1KC8Q 1YITP 1F80D 2P9XA 3Q20A 4XROA 4R0MA 4U0AA 4H2WC 1VQ7P 2LF4A 1W2BO 1EOQA 3B5IA 2MF4A 2VLOA 2VSQA 5HV8A 2LOLA 2EG5A 2QEXP 2KGAA 3G21A 3EJBA 1YJ9P 4QKOA 5HGLA 3CCMP 1YHQP 2FVEA 3HZQA 5DCKA 2N5IA 4BPFA 4GR2A 2N5HA 1E6JP 1YI2P 2BUOA 1FR2A 3DS3A 4UHPB 1IMQA 1T8KA 4IZ6A 1K73Q 1YIJP 3CCSP 3VRLC 4QNBA 3G71P 4U0EA 3HYBA 2JAZA 2BHVA 3CMAP 2MR8A 2NO8A 5HGNA 4PWVB 2KOSA 1A43A 3H47A 2PEOA 1S72P
chains in the Genus database with same CATH topology
2JU2A 2AFEA 2N98A 5KP8B 1HQBA 2EHSA 1ACPA 2KOPA 2L9FA 2XZ1C 1OR5A 2ROQA 2AFDA 1VKUA 4PXHB 2KOOA 1F80D 5CZDB 2K93A 2FVFA 2EHTA 2M5RA 2FACA 2CQ8A 4R0MA 2K2QA 2LIUA 2KG6A 1NQ4A 2JU1A 2K0XA 2GDYA 4H2WC 1L0HA 2KORA 2KWLA 2L22A 5KP6B 2MF4A 2AF8A 2LTEA 2MVVA 4MRTC 5HVCA 2MY5A 4CA3A 4BPGA 2VSQA 5HV8A 2LOLA 2MR7A 2FHSC 2K92A 2XZ0D 3RG2A 2KGAA 2FQ0A 1HY8A 2X2BA 4H2XC 4H2YC 3EJDA 2KGEA 3EJBA 2KG8A 2LIWA 2LMLA 3CE7A 2DNWA 3GZLA 1X3OA 2JQ4A 2CG5B 2KW2A 5EJDA 2MVUA 2FVEA 2JGPA 4NEOA 2CNRA 2QNWA 2N5IA 2K94A 4BPFA 2LL8A 2N5HA 1DNYA 2CGQA 2FQ2A 3GZMA 2MD9A 1L0IA 2LKIA 2PNGA 2GDWA 5KP7B 2GDXA 3LMOA 1T8KA 2KGDA 4HKGA 4IZ6A 2K0YA 2AVAA 2N6ZA 2FQ1A 2KR5A 2N6YA 2KG9A 3NY7B 2L4BA 2LPKA 4BPHA 2FVAA 2FAEA 1AF8A 2FADA 2MR8A 2N50A 4DG9A 3EJEA 2L0QA 4PWVB 1DV5A 2KOSA 2KGCA 1KLPA 2KOQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JU2 A;  2AFE A;  2N98 A;  5KP8 B;  1HQB A;  2EHS A;  1ACP A;  2KOP A;  2L9F A;  2XZ1 C;  1OR5 A;  2ROQ A;  2AFD A;  1VKU A;  4PXH B;  2KOO A;  1F80 D;  5CZD B;  2K93 A;  2FVF A;  2EHT A;  2M5R A;  2FAC A;  2CQ8 A;  4R0M A;  2K2Q A;  2LIU A;  2KG6 A;  1NQ4 A;  2JU1 A;  2K0X A;  2GDY A;  4H2W C;  1L0H A;  2KOR A;  2KWL A;  2L22 A;  5KP6 B;  2MF4 A;  2AF8 A;  2LTE A;  2MVV A;  4MRT C;  5HVC A;  2MY5 A;  4CA3 A;  4BPG A;  2VSQ A;  5HV8 A;  2LOL A;  2MR7 A;  2FHS C;  2K92 A;  2XZ0 D;  3RG2 A;  2KGA A;  2FQ0 A;  1HY8 A;  2X2B A;  4H2X C;  4H2Y C;  3EJD A;  2KGE A;  3EJB A;  2KG8 A;  2LIW A;  2LML A;  3CE7 A;  2DNW A;  3GZL A;  1X3O A;  2JQ4 A;  2CG5 B;  2KW2 A;  5EJD A;  2MVU A;  2FVE A;  2JGP A;  4NEO A;  2CNR A;  2QNW A;  2N5I A;  2K94 A;  4BPF A;  2LL8 A;  2N5H A;  1DNY A;  2CGQ A;  2FQ2 A;  3GZM A;  2MD9 A;  1L0I A;  2LKI A;  2PNG A;  2GDW A;  5KP7 B;  2GDX A;  3LMO A;  1T8K A;  2KGD A;  4HKG A;  4IZ6 A;  2K0Y A;  2AVA A;  2N6Z A;  2FQ1 A;  2KR5 A;  2N6Y A;  2KG9 A;  3NY7 B;  2L4B A;  2LPK A;  4BPH A;  2FVA A;  2FAE A;  1AF8 A;  2FAD A;  2MR8 A;  2N50 A;  4DG9 A;  3EJE A;  2L0Q A;  4PWV B;  1DV5 A;  2KOS A;  2KGC A;  1KLP A;  2KOQ A; 
#chains in the Genus database with same CATH topology
 2JYG A;  2AFE A;  1AYI A;  1MZ8 A;  5BS1 A;  3GKL C;  1VQ8 P;  2L9F A;  2XZ1 C;  4U0F A;  3I55 P;  3CCE P;  1OR5 A;  2PEQ A;  2PEJ A;  3G0V A;  2K93 A;  1ZNV A;  2XV6 A;  1RNI A;  1VQO P;  1Q81 Q;  3RG6 C;  1Q86 Q;  2K2Q A;  1VQ9 P;  3H4E A;  1NQ4 A;  2JU1 A;  2K0X A;  2PY8 A;  2KOR A;  2L22 A;  1D1D A;  3CPW O;  3CD6 P;  2AF8 A;  2QA4 P;  2MVV A;  4COP A;  1Z6M A;  3P05 A;  5HGO A;  2MY5 A;  4CA3 A;  3M1M A;  5F2K A;  1RO2 A;  1Q7Y Q;  3MGE A;  2GZJ A;  2MR7 A;  2JO0 A;  2K92 A;  3RG2 A;  2OTL P;  1M6E X;  2JYL A;  3DS2 A;  2X2B A;  2EIA A;  1EMV A;  1BAJ A;  2GYK A;  3CC7 P;  3GZL A;  1X3O A;  2PEM A;  1KQS O;  3CXC O;  3DPH A;  4NEO A;  1QVF O;  2QNW A;  2WPT A;  3WBH A;  3CCV P;  1ZMB A;  1A8O A;  2CGQ A;  3GZM A;  1VQL P;  3LMO A;  2AVA A;  5I4T G;  2N6Y A;  1VQ4 P;  2KG9 A;  2JBG A;  4PH1 A;  2K5X A;  3B4Q A;  2FAE A;  2CWO A;  2N50 A;  4COC A;  7CEI A;  2L0Q A;  2OTJ P;  1K9M Q;  2GZG A;  1BXI A;  1VQM P;  3U43 A;  2KOQ A;  2PEK A;  1VKU A;  4PH0 A;  4XFX A;  5CZD B;  1QVG O;  2FVF A;  2M5R A;  2FAC A;  2K0D X;  2PEI A;  3CC4 P;  2GZI A;  1K8A Q;  1Q82 Q;  2Z45 A;  2KG6 A;  5EW5 E;  3CC2 P;  3G1G A;  3CCL P;  2KWL A;  1AUM A;  5KP6 B;  1KD1 Q;  4F37 A;  2FHS C;  2FQ0 A;  1EIA A;  1HY8 A;  4H2Y C;  3EJD A;  2LML A;  3CE7 A;  1UNK A;  2GZE A;  2DNW A;  2JQ4 A;  1M6N A;  5EJD A;  1UJZ A;  2MVU A;  3CCJ P;  3GJN A;  2JB0 A;  1DNY A;  5F2O A;  5JPA A;  2VLP A;  4U0D A;  1GXG A;  1RO0 A;  2LKI A;  3G1I A;  2PNG A;  2GDW A;  5KP7 B;  4HKG A;  2KGD A;  2DGY A;  3I56 P;  2N6Z A;  2FQ1 A;  5F2N A;  2Z44 A;  1CEI A;  2L4B A;  2LPK A;  4BPH A;  1YJW P;  1AF8 A;  4U0B A;  1VQP P;  1VQ5 P;  4DG9 A;  3EJE A;  1KLP A;  3CCQ P;  1HQB A;  2EHS A;  1M74 A;  1ACP A;  2KOP A;  1IMP A;  4XFY A;  2ROQ A;  1VQK P;  5HGM A;  1GPJ A;  1M1K Q;  2EHT A;  2CQ8 A;  2KOD A;  2LIU A;  2VLQ A;  1QRJ A;  1M90 Q;  3G26 A;  3G28 A;  2GDY A;  2L6E A;  1VQN P;  1L0H A;  3E2D A;  3G4S P;  2M8L A;  1IUQ A;  2LTE A;  4IPY A;  5BS2 A;  3CME P;  4MRT C;  5HVC A;  4BPG A;  4M0I A;  3CCR P;  4GR6 A;  1VQ6 P;  2XZ0 D;  1N8R Q;  3DTJ A;  2M8N A;  3OW2 O;  4H2X C;  3CCU P;  1VHN A;  2KGE A;  2KG8 A;  4XRQ A;  2LIW A;  3DS4 A;  2E1M A;  2GZF A;  2CG5 B;  2KW2 A;  3DS5 A;  1JJ2 O;  3DS0 A;  2JGP A;  2CNR A;  2XT1 A;  2K94 A;  4WYM A;  2LL8 A;  2FQ2 A;  1L0I A;  2MD9 A;  3DS1 A;  3LRY A;  2GDX A;  2K0Y A;  2Z46 A;  2KR5 A;  3H0D A;  3NY7 B;  3G29 A;  2ERH A;  2FVA A;  1GXH A;  2OAR A;  2XXM A;  2VLN A;  2FAD A;  1DV5 A;  2PEN A;  2M8P A;  2KGC A;  2JU2 A;  2N98 A;  5KP8 B;  1YJN P;  3G6E P;  2ONT A;  1E0H A;  2EFJ A;  4XFZ A;  4U0C A;  3NTE A;  1K30 A;  1NJI Q;  2AFD A;  4PXH B;  2KOO A;  1KC8 Q;  1YIT P;  1F80 D;  2P9X A;  3Q20 A;  4XRO A;  4R0M A;  4U0A A;  4H2W C;  1VQ7 P;  2LF4 A;  1W2B O;  1EOQ A;  3B5I A;  2MF4 A;  2VLO A;  2VSQ A;  5HV8 A;  2LOL A;  2EG5 A;  2QEX P;  2KGA A;  3G21 A;  3EJB A;  1YJ9 P;  4QKO A;  5HGL A;  3CCM P;  1YHQ P;  2FVE A;  3HZQ A;  5DCK A;  2N5I A;  4BPF A;  4GR2 A;  2N5H A;  1E6J P;  1YI2 P;  2BUO A;  1FR2 A;  3DS3 A;  4UHP B;  1IMQ A;  1T8K A;  4IZ6 A;  1K73 Q;  1YIJ P;  3CCS P;  3VRL C;  4QNB A;  3G71 P;  4U0E A;  3HYB A;  2JAZ A;  2BHV A;  3CMA P;  2MR8 A;  2NO8 A;  5HGN A;  4PWV B;  2KOS A;  1A43 A;  3H47 A;  2PEO A;  1S72 P; 
#chains in the Genus database with same CATH homology
 2JU2 A;  2AFE A;  2N98 A;  5KP8 B;  1HQB A;  2EHS A;  1ACP A;  2KOP A;  2L9F A;  2XZ1 C;  1OR5 A;  2ROQ A;  2AFD A;  1VKU A;  4PXH B;  2KOO A;  1F80 D;  5CZD B;  2K93 A;  2FVF A;  2EHT A;  2M5R A;  2FAC A;  2CQ8 A;  4R0M A;  2K2Q A;  2LIU A;  2KG6 A;  1NQ4 A;  2JU1 A;  2K0X A;  2GDY A;  4H2W C;  1L0H A;  2KOR A;  2KWL A;  2L22 A;  5KP6 B;  2MF4 A;  2AF8 A;  2LTE A;  2MVV A;  4MRT C;  5HVC A;  2MY5 A;  4CA3 A;  4BPG A;  2VSQ A;  5HV8 A;  2LOL A;  2MR7 A;  2FHS C;  2K92 A;  2XZ0 D;  3RG2 A;  2KGA A;  2FQ0 A;  1HY8 A;  2X2B A;  4H2X C;  4H2Y C;  3EJD A;  2KGE A;  3EJB A;  2KG8 A;  2LIW A;  2LML A;  3CE7 A;  2DNW A;  3GZL A;  1X3O A;  2JQ4 A;  2CG5 B;  2KW2 A;  5EJD A;  2MVU A;  2FVE A;  2JGP A;  4NEO A;  2CNR A;  2QNW A;  2N5I A;  2K94 A;  4BPF A;  2LL8 A;  2N5H A;  1DNY A;  2CGQ A;  2FQ2 A;  3GZM A;  2MD9 A;  1L0I A;  2LKI A;  2PNG A;  2GDW A;  5KP7 B;  2GDX A;  3LMO A;  1T8K A;  2KGD A;  4HKG A;  4IZ6 A;  2K0Y A;  2AVA A;  2N6Z A;  2FQ1 A;  2KR5 A;  2N6Y A;  2KG9 A;  3NY7 B;  2L4B A;  2LPK A;  4BPH A;  2FVA A;  2FAE A;  1AF8 A;  2FAD A;  2MR8 A;  2N50 A;  4DG9 A;  3EJE A;  2L0Q A;  4PWV B;  1DV5 A;  2KOS A;  2KGC A;  1KLP A;  2KOQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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