1DV5A

Tertiary structure of apo-d-alanyl carrier protein
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
80
structure length
80
Chain Sequence
ADEAIKNGVLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQAQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords APO-D-ALANYL CARRIER PROTEIN
publication title Biosynthesis of D-alanyl-lipoteichoic acid: the tertiary structure of apo-D-alanyl carrier protein.
pubmed doi rcsb
source organism Lactobacillus casei
molecule tags Transport protein
total genus 17
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2000-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 1dv5A00
2KGAA 2M5RA 5CZDB 1L0HA 2N5HA 3GZLA 2N6YA 2K0XA 2KGCA 2FQ0A 2LKIA 2KG8A 1DNYA 1F80D 2FQ2A 5HV8A 2MR8A 2FVEA 1AF8A 4MRTC 2KR5A 1VKUA 4R0MA 4IZ6A 2GDXA 3LMOA 2CG5B 2MVVA 2AFEA 2AFDA 1T8KA 3NY7B 5KP8B 3EJBA 2N6ZA 2PNGA 2GDYA 4BPHA 2X2BA 3GZMA 2N5IA 2KOPA 4H2YC 2GDWA 1NQ4A 3EJDA 2FAEA 2K2QA 2KGDA 3CE7A 2L22A 4PXHB 3EJEA 2QNWA 2FHSC 2KG9A 2AF8A 4DG9A 2FQ1A 4BPFA 2XZ1C 2KOQA 4PWVB 2JU2A 2LL8A 4NEOA 2N50A 5KP7B 2VSQA 2FVAA 5KP6B 2LIWA 2LIUA 1HQBA 2K92A 2ROQA 1OR5A 2AVAA 4HKGA 2L0QA 2L9FA 2L4BA 2EHSA 2FADA 2XZ0D 2MY5A 5EJDA 2KWLA 2CQ8A 1ACPA 2KOOA 4H2XC 2KGEA 2LPKA 2LMLA 2JQ4A 2LTEA 2N98A 1HY8A 4H2WC 2MR7A 4CA3A 2MF4A 2K94A 2FVFA 2LOLA 2DNWA 1L0IA 1KLPA 2K93A 2MD9A 2KG6A 2FACA 2EHTA 1DV5A 2KW2A 2KORA 2MVUA 5HVCA 2CNRA 1X3OA 2K0YA 2JU1A 3RG2A 4BPGA 2KOSA 2JGPA 2CGQA
chains in the Genus database with same CATH superfamily
2M5RA 5CZDB 3OW2O 1L0HA 1BAJA 4WYMA 2KGCA 1YJNP 1YJ9P 2XV6A 2E1MA 2L6EA 4F37A 1F80D 2FQ2A 2PEOA 5HV8A 2MR8A 2FVEA 1M6NA 1VKUA 5HGOA 1GXGA 2AFEA 1YITP 1T8KA 2JO0A 5KP8B 3G1IA 2N5IA 2KOPA 3CCEP 2JAZA 2XT1A 1Z6MA 1A43A 2BUOA 2FQ1A 4DG9A 4PWVB 3VRLC 1K8AQ 4NEOA 2N50A 5KP7B 3H0DA 5BS2A 2VSQA 3G71P 1QVGO 2NO8A 3CCSP 3CC4P 2L0QA 1E0HA 2L9FA 2GZEA 3CC7P 1N8RQ 5EJDA 3CCUP 1VQ7P 2CQ8A 2VLNA 2JQ4A 2GYKA 3G4SP 1IUQA 2QA4P 4COPA 1M74A 1KC8Q 3CC2P 4H2WC 1Q7YQ 2MR7A 1EMVA 4CA3A 2MF4A 2EFJA 2FVFA 2DNWA 1KLPA 4XROA 1A8OA 2JB0A 5HVCA 4U0FA 1NJIQ 1VQNP 2GZJA 5EW5E 2K0YA 2M8PA 3CCVP 2JGPA 1E6JP 2K0DX 2PEJA 1YJWP 2KG8A 1AUMA 3CCLP 2OARA 3CD6P 3LMOA 3LRYA 2CG5B 2PEMA 2PY8A 3HYBA 1MZ8A 1Q82Q 2PNGA 1EOQA 1VQ9P 2GDWA 1NQ4A 3MGEA 2JBGA 4PXHB 3CMEP 4XFZA 1Q86Q 3EJEA 4UHPB 2FHSC 2KG9A 2AF8A 1Q81Q 2VLOA 1VQPP 1VQ6P 1VQ5P 3G21A 1ZMBA 2JU2A 2VLQA 5KP6B 5JPAA 2Z45A 2PEIA 1IMPA 3NTEA 1HQBA 2ROQA 4PH0A 4HKGA 4M0IA 4IPYA 1K9MQ 3H47A 2Z46A 2KWLA 3CPWO 1M1KQ 2KOOA 4QKOA 4H2XC 2LPKA 3G28A 2LMLA 3U43A 2PEQA 1YI2P 3DS4A 5F2NA 2OTJP 1ZNVA 2K5XA 3M1MA 2EHTA 2BHVA 2KORA 3G1GA 5DCKA 1X3OA 4COCA 1YIJP 3RG2A 2N5HA 2CWOA 1VQLP 2K0XA 2FQ0A 2LKIA 2Z44A 3DS5A 3DS2A 2ERHA 5HGMA 4QNBA 2KR5A 2GDXA 3DPHA 1RNIA 2PEKA 2MVVA 3NY7B 3DS3A 4BPHA 1VQKP 2X2BA 3GZMA 3EJDA 1GXHA 2VLPA 2FAEA 2PENA 2K2QA 3CCMP 1VHNA 5I4TG 2LF4A 3DTJA 3WBHA 2LL8A 2OTLP 2FVAA 2LIWA 3CMAP 2K92A 1OR5A 2AVAA 1VQOP 2L4BA 2FADA 2MY5A 2DGYA 2XXMA 1D1DA 1AYIA 1ACPA 2KGEA 1K30A 1KD1Q 2N98A 3Q20A 4U0BA 1HY8A 2P9XA 2GZGA 4U0DA 2LOLA 2M8NA 1L0IA 2MD9A 2KG6A 2FACA 1DV5A 2GZFA 2MVUA 4GR2A 3E2DA 1UJZA 1EIAA 7CEIA 1VQMP 1VQ8P 3G0VA 2JU1A 4BPGA 2KGAA 3GZLA 2N6YA 4PH1A 3B5IA 2JYGA 1DNYA 1QRJA 1AF8A 4MRTC 3CCQP 4R0MA 4IZ6A 2QEXP 2M8LA 3RG6C 1W2BO 3GJNA 2AFDA 3EJBA 2N6ZA 2GDYA 1K73Q 2EIAA 4H2YC 1JJ2O 4U0EA 3CXCO 2KGDA 3CE7A 1RO2A 1RO0A 2L22A 2KODA 1VQ4P 2QNWA 3I56P 3G6EP 4BPFA 2XZ1C 2KOQA 4XFXA 2EG5A 5HGNA 5F2OA 1FR2A 3HZQA 1UNKA 4GR6A 2LIUA 5HGLA 1YHQP 1GPJA 3DS0A 4XRQA 3CCJP 3I55P 2EHSA 2XZ0D 3H4EA 5F2KA 2GZIA 4XFYA 2JYLA 2LTEA 1S72P 1BXIA 2K94A 4U0CA 3GKLC 2WPTA 4U0AA 2K93A 3DS1A 1M90Q 3B4QA 3G29A 2KW2A 3G26A 2CNRA 1IMQA 5BS1A 1M6EX 1KQSO 1QVFO 2ONTA 1CEIA 2KOSA 3CCRP 2CGQA 3P05A
chains in the Genus database with same CATH topology
2KGAA 2M5RA 5CZDB 1L0HA 2N5HA 3GZLA 2N6YA 2K0XA 2KGCA 2FQ0A 2LKIA 2KG8A 1DNYA 1F80D 2FQ2A 5HV8A 2MR8A 2FVEA 1AF8A 4MRTC 2KR5A 1VKUA 4R0MA 4IZ6A 2GDXA 3LMOA 2CG5B 2MVVA 2AFEA 2AFDA 1T8KA 3NY7B 5KP8B 3EJBA 2N6ZA 2PNGA 2GDYA 4BPHA 2X2BA 3GZMA 2N5IA 2KOPA 4H2YC 2GDWA 1NQ4A 3EJDA 2FAEA 2K2QA 2KGDA 3CE7A 2L22A 4PXHB 3EJEA 2QNWA 2FHSC 2KG9A 2AF8A 4DG9A 2FQ1A 4BPFA 2XZ1C 2KOQA 4PWVB 2JU2A 2LL8A 4NEOA 2N50A 5KP7B 2VSQA 2FVAA 5KP6B 2LIWA 2LIUA 1HQBA 2K92A 2ROQA 1OR5A 2AVAA 4HKGA 2L0QA 2L9FA 2L4BA 2EHSA 2FADA 2XZ0D 2MY5A 5EJDA 2KWLA 2CQ8A 1ACPA 2KOOA 4H2XC 2KGEA 2LPKA 2LMLA 2JQ4A 2LTEA 2N98A 1HY8A 4H2WC 2MR7A 4CA3A 2MF4A 2K94A 2FVFA 2LOLA 2DNWA 1L0IA 1KLPA 2K93A 2MD9A 2KG6A 2FACA 2EHTA 1DV5A 2KW2A 2KORA 2MVUA 5HVCA 2CNRA 1X3OA 2K0YA 2JU1A 3RG2A 4BPGA 2KOSA 2JGPA 2CGQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KGA A;  2M5R A;  5CZD B;  1L0H A;  2N5H A;  3GZL A;  2N6Y A;  2K0X A;  2KGC A;  2FQ0 A;  2LKI A;  2KG8 A;  1DNY A;  1F80 D;  2FQ2 A;  5HV8 A;  2MR8 A;  2FVE A;  1AF8 A;  4MRT C;  2KR5 A;  1VKU A;  4R0M A;  4IZ6 A;  2GDX A;  3LMO A;  2CG5 B;  2MVV A;  2AFE A;  2AFD A;  1T8K A;  3NY7 B;  5KP8 B;  3EJB A;  2N6Z A;  2PNG A;  2GDY A;  4BPH A;  2X2B A;  3GZM A;  2N5I A;  2KOP A;  4H2Y C;  2GDW A;  1NQ4 A;  3EJD A;  2FAE A;  2K2Q A;  2KGD A;  3CE7 A;  2L22 A;  4PXH B;  3EJE A;  2QNW A;  2FHS C;  2KG9 A;  2AF8 A;  4DG9 A;  2FQ1 A;  4BPF A;  2XZ1 C;  2KOQ A;  4PWV B;  2JU2 A;  2LL8 A;  4NEO A;  2N50 A;  5KP7 B;  2VSQ A;  2FVA A;  5KP6 B;  2LIW A;  2LIU A;  1HQB A;  2K92 A;  2ROQ A;  1OR5 A;  2AVA A;  4HKG A;  2L0Q A;  2L9F A;  2L4B A;  2EHS A;  2FAD A;  2XZ0 D;  2MY5 A;  5EJD A;  2KWL A;  2CQ8 A;  1ACP A;  2KOO A;  4H2X C;  2KGE A;  2LPK A;  2LML A;  2JQ4 A;  2LTE A;  2N98 A;  1HY8 A;  4H2W C;  2MR7 A;  4CA3 A;  2MF4 A;  2K94 A;  2FVF A;  2LOL A;  2DNW A;  1L0I A;  1KLP A;  2K93 A;  2MD9 A;  2KG6 A;  2FAC A;  2EHT A;  1DV5 A;  2KW2 A;  2KOR A;  2MVU A;  5HVC A;  2CNR A;  1X3O A;  2K0Y A;  2JU1 A;  3RG2 A;  4BPG A;  2KOS A;  2JGP A;  2CGQ A; 
#chains in the Genus database with same CATH topology
 2M5R A;  5CZD B;  3OW2 O;  1L0H A;  1BAJ A;  4WYM A;  2KGC A;  1YJN P;  1YJ9 P;  2XV6 A;  2E1M A;  2L6E A;  4F37 A;  1F80 D;  2FQ2 A;  2PEO A;  5HV8 A;  2MR8 A;  2FVE A;  1M6N A;  1VKU A;  5HGO A;  1GXG A;  2AFE A;  1YIT P;  1T8K A;  2JO0 A;  5KP8 B;  3G1I A;  2N5I A;  2KOP A;  3CCE P;  2JAZ A;  2XT1 A;  1Z6M A;  1A43 A;  2BUO A;  2FQ1 A;  4DG9 A;  4PWV B;  3VRL C;  1K8A Q;  4NEO A;  2N50 A;  5KP7 B;  3H0D A;  5BS2 A;  2VSQ A;  3G71 P;  1QVG O;  2NO8 A;  3CCS P;  3CC4 P;  2L0Q A;  1E0H A;  2L9F A;  2GZE A;  3CC7 P;  1N8R Q;  5EJD A;  3CCU P;  1VQ7 P;  2CQ8 A;  2VLN A;  2JQ4 A;  2GYK A;  3G4S P;  1IUQ A;  2QA4 P;  4COP A;  1M74 A;  1KC8 Q;  3CC2 P;  4H2W C;  1Q7Y Q;  2MR7 A;  1EMV A;  4CA3 A;  2MF4 A;  2EFJ A;  2FVF A;  2DNW A;  1KLP A;  4XRO A;  1A8O A;  2JB0 A;  5HVC A;  4U0F A;  1NJI Q;  1VQN P;  2GZJ A;  5EW5 E;  2K0Y A;  2M8P A;  3CCV P;  2JGP A;  1E6J P;  2K0D X;  2PEJ A;  1YJW P;  2KG8 A;  1AUM A;  3CCL P;  2OAR A;  3CD6 P;  3LMO A;  3LRY A;  2CG5 B;  2PEM A;  2PY8 A;  3HYB A;  1MZ8 A;  1Q82 Q;  2PNG A;  1EOQ A;  1VQ9 P;  2GDW A;  1NQ4 A;  3MGE A;  2JBG A;  4PXH B;  3CME P;  4XFZ A;  1Q86 Q;  3EJE A;  4UHP B;  2FHS C;  2KG9 A;  2AF8 A;  1Q81 Q;  2VLO A;  1VQP P;  1VQ6 P;  1VQ5 P;  3G21 A;  1ZMB A;  2JU2 A;  2VLQ A;  5KP6 B;  5JPA A;  2Z45 A;  2PEI A;  1IMP A;  3NTE A;  1HQB A;  2ROQ A;  4PH0 A;  4HKG A;  4M0I A;  4IPY A;  1K9M Q;  3H47 A;  2Z46 A;  2KWL A;  3CPW O;  1M1K Q;  2KOO A;  4QKO A;  4H2X C;  2LPK A;  3G28 A;  2LML A;  3U43 A;  2PEQ A;  1YI2 P;  3DS4 A;  5F2N A;  2OTJ P;  1ZNV A;  2K5X A;  3M1M A;  2EHT A;  2BHV A;  2KOR A;  3G1G A;  5DCK A;  1X3O A;  4COC A;  1YIJ P;  3RG2 A;  2N5H A;  2CWO A;  1VQL P;  2K0X A;  2FQ0 A;  2LKI A;  2Z44 A;  3DS5 A;  3DS2 A;  2ERH A;  5HGM A;  4QNB A;  2KR5 A;  2GDX A;  3DPH A;  1RNI A;  2PEK A;  2MVV A;  3NY7 B;  3DS3 A;  4BPH A;  1VQK P;  2X2B A;  3GZM A;  3EJD A;  1GXH A;  2VLP A;  2FAE A;  2PEN A;  2K2Q A;  3CCM P;  1VHN A;  5I4T G;  2LF4 A;  3DTJ A;  3WBH A;  2LL8 A;  2OTL P;  2FVA A;  2LIW A;  3CMA P;  2K92 A;  1OR5 A;  2AVA A;  1VQO P;  2L4B A;  2FAD A;  2MY5 A;  2DGY A;  2XXM A;  1D1D A;  1AYI A;  1ACP A;  2KGE A;  1K30 A;  1KD1 Q;  2N98 A;  3Q20 A;  4U0B A;  1HY8 A;  2P9X A;  2GZG A;  4U0D A;  2LOL A;  2M8N A;  1L0I A;  2MD9 A;  2KG6 A;  2FAC A;  1DV5 A;  2GZF A;  2MVU A;  4GR2 A;  3E2D A;  1UJZ A;  1EIA A;  7CEI A;  1VQM P;  1VQ8 P;  3G0V A;  2JU1 A;  4BPG A;  2KGA A;  3GZL A;  2N6Y A;  4PH1 A;  3B5I A;  2JYG A;  1DNY A;  1QRJ A;  1AF8 A;  4MRT C;  3CCQ P;  4R0M A;  4IZ6 A;  2QEX P;  2M8L A;  3RG6 C;  1W2B O;  3GJN A;  2AFD A;  3EJB A;  2N6Z A;  2GDY A;  1K73 Q;  2EIA A;  4H2Y C;  1JJ2 O;  4U0E A;  3CXC O;  2KGD A;  3CE7 A;  1RO2 A;  1RO0 A;  2L22 A;  2KOD A;  1VQ4 P;  2QNW A;  3I56 P;  3G6E P;  4BPF A;  2XZ1 C;  2KOQ A;  4XFX A;  2EG5 A;  5HGN A;  5F2O A;  1FR2 A;  3HZQ A;  1UNK A;  4GR6 A;  2LIU A;  5HGL A;  1YHQ P;  1GPJ A;  3DS0 A;  4XRQ A;  3CCJ P;  3I55 P;  2EHS A;  2XZ0 D;  3H4E A;  5F2K A;  2GZI A;  4XFY A;  2JYL A;  2LTE A;  1S72 P;  1BXI A;  2K94 A;  4U0C A;  3GKL C;  2WPT A;  4U0A A;  2K93 A;  3DS1 A;  1M90 Q;  3B4Q A;  3G29 A;  2KW2 A;  3G26 A;  2CNR A;  1IMQ A;  5BS1 A;  1M6E X;  1KQS O;  1QVF O;  2ONT A;  1CEI A;  2KOS A;  3CCR P;  2CGQ A;  3P05 A; 
#chains in the Genus database with same CATH homology
 2KGA A;  2M5R A;  5CZD B;  1L0H A;  2N5H A;  3GZL A;  2N6Y A;  2K0X A;  2KGC A;  2FQ0 A;  2LKI A;  2KG8 A;  1DNY A;  1F80 D;  2FQ2 A;  5HV8 A;  2MR8 A;  2FVE A;  1AF8 A;  4MRT C;  2KR5 A;  1VKU A;  4R0M A;  4IZ6 A;  2GDX A;  3LMO A;  2CG5 B;  2MVV A;  2AFE A;  2AFD A;  1T8K A;  3NY7 B;  5KP8 B;  3EJB A;  2N6Z A;  2PNG A;  2GDY A;  4BPH A;  2X2B A;  3GZM A;  2N5I A;  2KOP A;  4H2Y C;  2GDW A;  1NQ4 A;  3EJD A;  2FAE A;  2K2Q A;  2KGD A;  3CE7 A;  2L22 A;  4PXH B;  3EJE A;  2QNW A;  2FHS C;  2KG9 A;  2AF8 A;  4DG9 A;  2FQ1 A;  4BPF A;  2XZ1 C;  2KOQ A;  4PWV B;  2JU2 A;  2LL8 A;  4NEO A;  2N50 A;  5KP7 B;  2VSQ A;  2FVA A;  5KP6 B;  2LIW A;  2LIU A;  1HQB A;  2K92 A;  2ROQ A;  1OR5 A;  2AVA A;  4HKG A;  2L0Q A;  2L9F A;  2L4B A;  2EHS A;  2FAD A;  2XZ0 D;  2MY5 A;  5EJD A;  2KWL A;  2CQ8 A;  1ACP A;  2KOO A;  4H2X C;  2KGE A;  2LPK A;  2LML A;  2JQ4 A;  2LTE A;  2N98 A;  1HY8 A;  4H2W C;  2MR7 A;  4CA3 A;  2MF4 A;  2K94 A;  2FVF A;  2LOL A;  2DNW A;  1L0I A;  1KLP A;  2K93 A;  2MD9 A;  2KG6 A;  2FAC A;  2EHT A;  1DV5 A;  2KW2 A;  2KOR A;  2MVU A;  5HVC A;  2CNR A;  1X3O A;  2K0Y A;  2JU1 A;  3RG2 A;  4BPG A;  2KOS A;  2JGP A;  2CGQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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