5KP8B

Crystal structure of the curacin biosynthetic pathway hmg synthase in complex with acetyl donor-acp
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
78
structure length
78
Chain Sequence
MSKEQVLKIIKKYTREIAPELEDSPLEPTDSLKKLGIDSVNRAEIIMMVMEDLSLNIPRIELAGAKNIGELADLFAAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords CurD
publication title Anatomy of the beta-branching enzyme of polyketide biosynthesis and its interaction with an acyl-ACP substrate.
pubmed doi rcsb
source organism Moorea producens 3l
total genus 26
structure length 78
sequence length 78
ec nomenclature
pdb deposition date 2016-07-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 5kp8B00
3EJDA 5EJDA 1F80D 1KLPA 1AF8A 2LL8A 3CE7A 1VKUA 2KOQA 2EHTA 5HVCA 2GDXA 2N98A 1X3OA 1DNYA 2KG6A 2LIUA 2FVFA 2MVVA 2JGPA 1HY8A 2L4BA 2LTEA 2CNRA 1OR5A 2KOSA 2M5RA 3LMOA 3EJEA 1HQBA 2FHSC 2QNWA 2AFDA 4H2YC 4IZ6A 2FAEA 2KG8A 2JU1A 2KR5A 2KW2A 4BPFA 2LMLA 2K0XA 3GZLA 4DG9A 2N6ZA 2L0QA 2LOLA 5KP6B 2MVUA 4NEOA 4H2WC 5KP8B 2FVEA 2FVAA 4MRTC 2FQ0A 2KOOA 2L9FA 2K92A 5CZDB 2CQ8A 2GDWA 2JQ4A 2EHSA 2GDYA 2FACA 4R0MA 2XZ1C 2L22A 2N5HA 2CGQA 2KG9A 2AFEA 1L0HA 3NY7B 4CA3A 4PXHB 4BPGA 4PWVB 2KGCA 3GZMA 1T8KA 1DV5A 2MR7A 2AF8A 5KP7B 2MD9A 2MY5A 2FADA 2KORA 2DNWA 2LIWA 2PNGA 2XZ0D 2FQ1A 2VSQA 5HV8A 2MF4A 2K2QA 2N6YA 2CG5B 2FQ2A 2MR8A 2N5IA 1NQ4A 2X2BA 4H2XC 2KOPA 2LPKA 3RG2A 4BPHA 2AVAA 2KGAA 2JU2A 2LKIA 2KGDA 3EJBA 2N50A 2K94A 2KGEA 1L0IA 1ACPA 2K0YA 4HKGA 2K93A 2KWLA 2ROQA
chains in the Genus database with same CATH superfamily
3CCVP 3CE7A 2EHTA 5HVCA 1DNYA 3CCUP 2JGPA 2PEOA 2LTEA 1VQLP 2EFJA 2XXMA 2KODA 2M5RA 3CCRP 1Q82Q 1RO2A 2FHSC 1QRJA 2GZFA 1K73Q 3CMEP 2FAEA 3G21A 3B5IA 2KW2A 2K0XA 3H0DA 3G29A 2L0QA 2MVUA 4NEOA 4M0IA 3E2DA 2FVAA 2BUOA 1EIAA 1IUQA 2L9FA 2FACA 1VQKP 2E1MA 2CGQA 3CCLP 2Z46A 3CCJP 1N8RQ 3HZQA 4PXHB 4PWVB 1DV5A 2L6EA 7CEIA 1A43A 2VLOA 2K0DX 2OTLP 1K9MQ 2XZ0D 1YIJP 2JYLA 5HV8A 2MF4A 1YJNP 3G26A 1VHNA 1ZNVA 2CG5B 2MR8A 3OW2O 4H2XC 1NQ4A 2GZEA 3LRYA 3CCQP 1E0HA 2JAZA 2AVAA 1RNIA 2PEMA 2GZGA 1K8AQ 1YHQP 1W2BO 1L0IA 2VLQA 1Q81Q 3CC4P 1VQOP 1IMQA 2KWLA 1YI2P 2JYGA 1IMPA 3EJDA 5EJDA 1F80D 5DCKA 2LL8A 1VKUA 2M8PA 2PEIA 4F37A 2EG5A 2LIUA 1VQ9P 3DS0A 2JBGA 3CCEP 4GR6A 1M74A 1BAJA 2AFDA 4H2YC 1RO0A 2Z45A 3DTJA 2M8LA 2QEXP 3CC2P 2KG8A 2JU1A 2KR5A 5F2NA 5F2KA 4QNBA 2LMLA 3H47A 3DS3A 3H4EA 4DG9A 1E6JP 2N6ZA 2LOLA 5KP6B 1M1KQ 1QVFO 3Q20A 2Z44A 5HGMA 4H2WC 5HGOA 3DS4A 1Q7YQ 1KC8Q 2FVEA 3NTEA 3CCMP 4MRTC 2NO8A 2K92A 1S72P 2JQ4A 4R0MA 3GKLC 2GZJA 2KG9A 5EW5E 1GXGA 1KQSO 3G6EP 2CWOA 3WBHA 4IPYA 2OARA 3GZMA 4PH1A 1T8KA 2ERHA 1A8OA 4GR2A 4U0EA 1VQMP 4U0FA 2FQ1A 3G0VA 3CD6P 1QVGO 1YJ9P 2FQ2A 1NJIQ 1VQ6P 2BHVA 3RG2A 1VQ4P 3HYBA 2KGDA 2K94A 1KD1Q 3CC7P 1BXIA 3VRLC 2K0YA 1CEIA 1D1DA 2M8NA 1UJZA 2GDXA 1X3OA 1Z6MA 2PEJA 2WPTA 3I56P 4U0CA 2FVFA 2MVVA 2L4BA 5BS2A 4PH0A 3G1IA 2CNRA 1OR5A 2DGYA 2PY8A 2EIAA 1EOQA 2GYKA 1VQNP 2XV6A 4BPFA 4XFYA 1FR2A 4QKOA 1JJ2O 4XFZA 1VQPP 1Q86Q 2FQ0A 3G4SP 2QA4P 2CQ8A 3G1GA 2OTJP 2N5HA 3P05A 4XFXA 1UNKA 4WYMA 1VQ5P 2AFEA 4CA3A 4BPGA 1VQ8P 4U0BA 2KGCA 3G71P 5HGLA 5KP7B 2MY5A 2LIWA 2DNWA 2PNGA 4UHPB 1GXHA 2PENA 2X2BA 2N5IA 1AUMA 3CXCO 4BPHA 2KGAA 2JU2A 2LKIA 1GPJA 3DS1A 3RG6C 1MZ8A 5F2OA 2K93A 2ROQA 2JB0A 2LF4A 1KLPA 2GZIA 1AF8A 3U43A 2KOQA 2VLNA 2N98A 2KG6A 1HY8A 2PEQA 3GJNA 2KOSA 2XT1A 3LMOA 5JPAA 3EJEA 1HQBA 1YITP 2P9XA 2ONTA 2PEKA 2QNWA 4IZ6A 4U0AA 5HGNA 3M1MA 3GZLA 4COPA 1M90Q 5KP8B 1M6EX 3DS5A 2KOOA 5CZDB 2GDWA 2EHSA 2GDYA 2XZ1C 3B4QA 2L22A 2K5XA 3CCSP 3CPWO 4XROA 1AYIA 1L0HA 3NY7B 4COCA 3G28A 1M6NA 2MR7A 2AF8A 3DS2A 2MD9A 5BS1A 1K30A 2FADA 2KORA 1EMVA 2VSQA 1YJWP 3MGEA 2K2QA 5I4TG 2N6YA 2KOPA 2LPKA 3I55P 3CMAP 4XRQA 3EJBA 2N50A 1ZMBA 2KGEA 1ACPA 4U0DA 2JO0A 4HKGA 1VQ7P 3DPHA 2VLPA
chains in the Genus database with same CATH topology
3EJDA 5EJDA 1F80D 1KLPA 1AF8A 2LL8A 3CE7A 1VKUA 2KOQA 2EHTA 5HVCA 2GDXA 2N98A 1X3OA 1DNYA 2KG6A 2LIUA 2FVFA 2MVVA 2JGPA 1HY8A 2L4BA 2LTEA 2CNRA 1OR5A 2KOSA 2M5RA 3LMOA 3EJEA 1HQBA 2FHSC 2QNWA 2AFDA 4H2YC 4IZ6A 2FAEA 2KG8A 2JU1A 2KR5A 2KW2A 4BPFA 2LMLA 2K0XA 3GZLA 4DG9A 2N6ZA 2L0QA 2LOLA 5KP6B 2MVUA 4NEOA 4H2WC 5KP8B 2FVEA 2FVAA 4MRTC 2FQ0A 2KOOA 2L9FA 2K92A 5CZDB 2CQ8A 2GDWA 2JQ4A 2EHSA 2GDYA 2FACA 4R0MA 2XZ1C 2L22A 2N5HA 2CGQA 2KG9A 2AFEA 1L0HA 3NY7B 4CA3A 4PXHB 4BPGA 4PWVB 2KGCA 3GZMA 1T8KA 1DV5A 2MR7A 2AF8A 5KP7B 2MD9A 2MY5A 2FADA 2KORA 2DNWA 2LIWA 2PNGA 2XZ0D 2FQ1A 2VSQA 5HV8A 2MF4A 2K2QA 2N6YA 2CG5B 2FQ2A 2MR8A 2N5IA 1NQ4A 2X2BA 4H2XC 2KOPA 2LPKA 3RG2A 4BPHA 2AVAA 2KGAA 2JU2A 2LKIA 2KGDA 3EJBA 2N50A 2K94A 2KGEA 1L0IA 1ACPA 2K0YA 4HKGA 2K93A 2KWLA 2ROQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EJD A;  5EJD A;  1F80 D;  1KLP A;  1AF8 A;  2LL8 A;  3CE7 A;  1VKU A;  2KOQ A;  2EHT A;  5HVC A;  2GDX A;  2N98 A;  1X3O A;  1DNY A;  2KG6 A;  2LIU A;  2FVF A;  2MVV A;  2JGP A;  1HY8 A;  2L4B A;  2LTE A;  2CNR A;  1OR5 A;  2KOS A;  2M5R A;  3LMO A;  3EJE A;  1HQB A;  2FHS C;  2QNW A;  2AFD A;  4H2Y C;  4IZ6 A;  2FAE A;  2KG8 A;  2JU1 A;  2KR5 A;  2KW2 A;  4BPF A;  2LML A;  2K0X A;  3GZL A;  4DG9 A;  2N6Z A;  2L0Q A;  2LOL A;  5KP6 B;  2MVU A;  4NEO A;  4H2W C;  5KP8 B;  2FVE A;  2FVA A;  4MRT C;  2FQ0 A;  2KOO A;  2L9F A;  2K92 A;  5CZD B;  2CQ8 A;  2GDW A;  2JQ4 A;  2EHS A;  2GDY A;  2FAC A;  4R0M A;  2XZ1 C;  2L22 A;  2N5H A;  2CGQ A;  2KG9 A;  2AFE A;  1L0H A;  3NY7 B;  4CA3 A;  4PXH B;  4BPG A;  4PWV B;  2KGC A;  3GZM A;  1T8K A;  1DV5 A;  2MR7 A;  2AF8 A;  5KP7 B;  2MD9 A;  2MY5 A;  2FAD A;  2KOR A;  2DNW A;  2LIW A;  2PNG A;  2XZ0 D;  2FQ1 A;  2VSQ A;  5HV8 A;  2MF4 A;  2K2Q A;  2N6Y A;  2CG5 B;  2FQ2 A;  2MR8 A;  2N5I A;  1NQ4 A;  2X2B A;  4H2X C;  2KOP A;  2LPK A;  3RG2 A;  4BPH A;  2AVA A;  2KGA A;  2JU2 A;  2LKI A;  2KGD A;  3EJB A;  2N50 A;  2K94 A;  2KGE A;  1L0I A;  1ACP A;  2K0Y A;  4HKG A;  2K93 A;  2KWL A;  2ROQ A; 
#chains in the Genus database with same CATH topology
 3CCV P;  3CE7 A;  2EHT A;  5HVC A;  1DNY A;  3CCU P;  2JGP A;  2PEO A;  2LTE A;  1VQL P;  2EFJ A;  2XXM A;  2KOD A;  2M5R A;  3CCR P;  1Q82 Q;  1RO2 A;  2FHS C;  1QRJ A;  2GZF A;  1K73 Q;  3CME P;  2FAE A;  3G21 A;  3B5I A;  2KW2 A;  2K0X A;  3H0D A;  3G29 A;  2L0Q A;  2MVU A;  4NEO A;  4M0I A;  3E2D A;  2FVA A;  2BUO A;  1EIA A;  1IUQ A;  2L9F A;  2FAC A;  1VQK P;  2E1M A;  2CGQ A;  3CCL P;  2Z46 A;  3CCJ P;  1N8R Q;  3HZQ A;  4PXH B;  4PWV B;  1DV5 A;  2L6E A;  7CEI A;  1A43 A;  2VLO A;  2K0D X;  2OTL P;  1K9M Q;  2XZ0 D;  1YIJ P;  2JYL A;  5HV8 A;  2MF4 A;  1YJN P;  3G26 A;  1VHN A;  1ZNV A;  2CG5 B;  2MR8 A;  3OW2 O;  4H2X C;  1NQ4 A;  2GZE A;  3LRY A;  3CCQ P;  1E0H A;  2JAZ A;  2AVA A;  1RNI A;  2PEM A;  2GZG A;  1K8A Q;  1YHQ P;  1W2B O;  1L0I A;  2VLQ A;  1Q81 Q;  3CC4 P;  1VQO P;  1IMQ A;  2KWL A;  1YI2 P;  2JYG A;  1IMP A;  3EJD A;  5EJD A;  1F80 D;  5DCK A;  2LL8 A;  1VKU A;  2M8P A;  2PEI A;  4F37 A;  2EG5 A;  2LIU A;  1VQ9 P;  3DS0 A;  2JBG A;  3CCE P;  4GR6 A;  1M74 A;  1BAJ A;  2AFD A;  4H2Y C;  1RO0 A;  2Z45 A;  3DTJ A;  2M8L A;  2QEX P;  3CC2 P;  2KG8 A;  2JU1 A;  2KR5 A;  5F2N A;  5F2K A;  4QNB A;  2LML A;  3H47 A;  3DS3 A;  3H4E A;  4DG9 A;  1E6J P;  2N6Z A;  2LOL A;  5KP6 B;  1M1K Q;  1QVF O;  3Q20 A;  2Z44 A;  5HGM A;  4H2W C;  5HGO A;  3DS4 A;  1Q7Y Q;  1KC8 Q;  2FVE A;  3NTE A;  3CCM P;  4MRT C;  2NO8 A;  2K92 A;  1S72 P;  2JQ4 A;  4R0M A;  3GKL C;  2GZJ A;  2KG9 A;  5EW5 E;  1GXG A;  1KQS O;  3G6E P;  2CWO A;  3WBH A;  4IPY A;  2OAR A;  3GZM A;  4PH1 A;  1T8K A;  2ERH A;  1A8O A;  4GR2 A;  4U0E A;  1VQM P;  4U0F A;  2FQ1 A;  3G0V A;  3CD6 P;  1QVG O;  1YJ9 P;  2FQ2 A;  1NJI Q;  1VQ6 P;  2BHV A;  3RG2 A;  1VQ4 P;  3HYB A;  2KGD A;  2K94 A;  1KD1 Q;  3CC7 P;  1BXI A;  3VRL C;  2K0Y A;  1CEI A;  1D1D A;  2M8N A;  1UJZ A;  2GDX A;  1X3O A;  1Z6M A;  2PEJ A;  2WPT A;  3I56 P;  4U0C A;  2FVF A;  2MVV A;  2L4B A;  5BS2 A;  4PH0 A;  3G1I A;  2CNR A;  1OR5 A;  2DGY A;  2PY8 A;  2EIA A;  1EOQ A;  2GYK A;  1VQN P;  2XV6 A;  4BPF A;  4XFY A;  1FR2 A;  4QKO A;  1JJ2 O;  4XFZ A;  1VQP P;  1Q86 Q;  2FQ0 A;  3G4S P;  2QA4 P;  2CQ8 A;  3G1G A;  2OTJ P;  2N5H A;  3P05 A;  4XFX A;  1UNK A;  4WYM A;  1VQ5 P;  2AFE A;  4CA3 A;  4BPG A;  1VQ8 P;  4U0B A;  2KGC A;  3G71 P;  5HGL A;  5KP7 B;  2MY5 A;  2LIW A;  2DNW A;  2PNG A;  4UHP B;  1GXH A;  2PEN A;  2X2B A;  2N5I A;  1AUM A;  3CXC O;  4BPH A;  2KGA A;  2JU2 A;  2LKI A;  1GPJ A;  3DS1 A;  3RG6 C;  1MZ8 A;  5F2O A;  2K93 A;  2ROQ A;  2JB0 A;  2LF4 A;  1KLP A;  2GZI A;  1AF8 A;  3U43 A;  2KOQ A;  2VLN A;  2N98 A;  2KG6 A;  1HY8 A;  2PEQ A;  3GJN A;  2KOS A;  2XT1 A;  3LMO A;  5JPA A;  3EJE A;  1HQB A;  1YIT P;  2P9X A;  2ONT A;  2PEK A;  2QNW A;  4IZ6 A;  4U0A A;  5HGN A;  3M1M A;  3GZL A;  4COP A;  1M90 Q;  5KP8 B;  1M6E X;  3DS5 A;  2KOO A;  5CZD B;  2GDW A;  2EHS A;  2GDY A;  2XZ1 C;  3B4Q A;  2L22 A;  2K5X A;  3CCS P;  3CPW O;  4XRO A;  1AYI A;  1L0H A;  3NY7 B;  4COC A;  3G28 A;  1M6N A;  2MR7 A;  2AF8 A;  3DS2 A;  2MD9 A;  5BS1 A;  1K30 A;  2FAD A;  2KOR A;  1EMV A;  2VSQ A;  1YJW P;  3MGE A;  2K2Q A;  5I4T G;  2N6Y A;  2KOP A;  2LPK A;  3I55 P;  3CMA P;  4XRQ A;  3EJB A;  2N50 A;  1ZMB A;  2KGE A;  1ACP A;  4U0D A;  2JO0 A;  4HKG A;  1VQ7 P;  3DPH A;  2VLP A; 
#chains in the Genus database with same CATH homology
 3EJD A;  5EJD A;  1F80 D;  1KLP A;  1AF8 A;  2LL8 A;  3CE7 A;  1VKU A;  2KOQ A;  2EHT A;  5HVC A;  2GDX A;  2N98 A;  1X3O A;  1DNY A;  2KG6 A;  2LIU A;  2FVF A;  2MVV A;  2JGP A;  1HY8 A;  2L4B A;  2LTE A;  2CNR A;  1OR5 A;  2KOS A;  2M5R A;  3LMO A;  3EJE A;  1HQB A;  2FHS C;  2QNW A;  2AFD A;  4H2Y C;  4IZ6 A;  2FAE A;  2KG8 A;  2JU1 A;  2KR5 A;  2KW2 A;  4BPF A;  2LML A;  2K0X A;  3GZL A;  4DG9 A;  2N6Z A;  2L0Q A;  2LOL A;  5KP6 B;  2MVU A;  4NEO A;  4H2W C;  5KP8 B;  2FVE A;  2FVA A;  4MRT C;  2FQ0 A;  2KOO A;  2L9F A;  2K92 A;  5CZD B;  2CQ8 A;  2GDW A;  2JQ4 A;  2EHS A;  2GDY A;  2FAC A;  4R0M A;  2XZ1 C;  2L22 A;  2N5H A;  2CGQ A;  2KG9 A;  2AFE A;  1L0H A;  3NY7 B;  4CA3 A;  4PXH B;  4BPG A;  4PWV B;  2KGC A;  3GZM A;  1T8K A;  1DV5 A;  2MR7 A;  2AF8 A;  5KP7 B;  2MD9 A;  2MY5 A;  2FAD A;  2KOR A;  2DNW A;  2LIW A;  2PNG A;  2XZ0 D;  2FQ1 A;  2VSQ A;  5HV8 A;  2MF4 A;  2K2Q A;  2N6Y A;  2CG5 B;  2FQ2 A;  2MR8 A;  2N5I A;  1NQ4 A;  2X2B A;  4H2X C;  2KOP A;  2LPK A;  3RG2 A;  4BPH A;  2AVA A;  2KGA A;  2JU2 A;  2LKI A;  2KGD A;  3EJB A;  2N50 A;  2K94 A;  2KGE A;  1L0I A;  1ACP A;  2K0Y A;  4HKG A;  2K93 A;  2KWL A;  2ROQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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