2JYGA

Solution structure of the w184a/m185a mutant of the carboxy-terminal dimerization domain of the hiv-1 capsid protein
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
84
structure length
84
Chain Sequence
TSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Human immunodeficiency virus 1
publication title Solution Structure of a Double Mutant of the Carboxy-Terminal Dimerization Domain of the HIV-1 Capsid Protein.
pubmed doi rcsb
molecule keywords Capsid protein p24 (CA)
total genus 16
structure length 84
sequence length 84
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2007-12-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2jygA00
5HGOA 3G26A 2M8LA 2XT1A 3G0VA 1E6JP 2ONTA 4U0AA 2JYLA 4XFXA 4XROA 1A43A 3DS0A 4QNBA 3DPHA 3G21A 3G28A 3G29A 1QRJA 1AUMA 3NTEA 2LF4A 2EIAA 3DS4A 2BUOA 4XRQA 2M8NA 4IPYA 3DS3A 4U0CA 3VRLC 1EIAA 2KODA 4U0EA 3H47A 1A8OA 3P05A 1EOQA 3DTJA 2JO0A 4COCA 5I4TG 2XXMA 2JYGA 3G1IA 1D1DA 3H4EA 4XFZA 4PH0A 4PH1A 2L6EA 3DS1A 5HGMA 5JPAA 4COPA 2XV6A 2M8PA 3G1GA 4M0IA 4XFYA 3MGEA 3DS5A 4U0DA 5HGNA 3LRYA 4U0FA 4U0BA 4WYMA 5HGLA 3DS2A 5DCKA 1BAJA
chains in the Genus database with same CATH superfamily
2E1MA 2FHSC 1T8KA 2GZEA 2EIAA 1HQBA 3DTJA 1K73Q 3HZQA 2X2BA 2JQ4A 1M6EX 1KD1Q 1MZ8A 4F37A 2CNRA 1IUQA 2PEOA 1Q7YQ 1FR2A 1E6JP 3CCSP 1VQKP 1A43A 3DPHA 3G21A 1AF8A 1NQ4A 1L0HA 1ACPA 4U0EA 1EMVA 3H0DA 4PH0A 5HGMA 5F2OA 1Z6MA 1UJZA 3CE7A 3Q20A 2K0XA 3MGEA 1OR5A 4U0BA 4WYMA 4R0MA 3U43A 3CC4P 1BAJA 4H2WC 2KR5A 3CCUP 4XROA 2LIUA 2DGYA 3CXCO 3CMAP 3CC7P 2AF8A 1S72P 1VKUA 4IPYA 2GDYA 3RG2A 2OTLP 4QKOA 2LMLA 2KG6A 2XV6A 4XFYA 3LRYA 4GR6A 1QVFO 2PENA 3DS2A 2KW2A 2N6ZA 2JB0A 2PY8A 2Z45A 4QNBA 1M1KQ 2BUOA 1M6NA 1E0HA 1K9MQ 1YJWP 1D1DA 2MD9A 2N50A 3GKLC 2QA4P 4HKGA 1QRJA 1AUMA 2DNWA 2ROQA 1VQ8P 4XRQA 2MY5A 2KGCA 4BPHA 1Q86Q 1EOQA 2QEXP 2K0YA 3DS1A 2KOQA 3G1GA 4CA3A 2GDXA 3NY7B 1N8RQ 2MF4A 1KC8Q 3GJNA 2N98A 7CEIA 2GYKA 3HYBA 2LF4A 1JJ2O 4U0CA 4GR2A 3VRLC 1IMPA 1RNIA 2JGPA 2AVAA 2FVFA 3CMEP 2VLOA 3CCRP 5HGLA 2VLPA 3WBHA 3G26A 5F2KA 3G0VA 2FVAA 2JAZA 4BPGA 2KGEA 3P05A 2N6YA 2XXMA 2L9FA 2K2QA 2MR8A 1HY8A 5EW5E 2ERHA 3E2DA 2KG9A 5HGNA 1F80D 1ZMBA 2JBGA 2FAEA 1KLPA 2WPTA 2XZ1C 1K8AQ 2XT1A 2KOPA 3DS4A 1L0IA 2VSQA 2FQ2A 2QNWA 4COCA 2VLQA 2L4BA 4XFZA 1VQMP 5KP6B 3RG6C 3GZLA 1VHNA 4U0AA 1K30A 5HVCA 2OTJP 2JYLA 5EJDA 3DS0A 3G6EP 1EIAA 2KWLA 3G1IA 1GPJA 5HV8A 5JPAA 2M8PA 1YI2P 5DCKA 2CG5B 2FQ1A 2NO8A 2BHVA 2K94A 1M90Q 2CGQA 3G28A 3NTEA 1RO2A 3G71P 1Q82Q 2CQ8A 2KODA 1GXGA 3H47A 3CCJP 5I4TG 2EG5A 2N5IA 2AFEA 2JU1A 2FQ0A 3B5IA 1Q81Q 3EJDA 5HGOA 2MVUA 3G4SP 2PEMA 1YJ9P 1ZNVA 2EHTA 3G29A 2MR7A 2KOSA 2PEQA 2PEKA 3GZMA 2GZJA 4PXHB 2VLNA 4MRTC 3H4EA 2Z44A 1YITP 2LTEA 2GDWA 2L22A 4U0DA 1YJNP 3CCVP 2Z46A 2M8LA 2ONTA 3CCMP 2AFDA 2JU2A 1VQ7P 2K5XA 2LPKA 2JYGA 3EJEA 2P9XA 1BXIA 2PEIA 1IMQA 3CCEP 2MVVA 5CZDB 1W2BO 2KGAA 2GZIA 4H2YC 4XFXA 3CC2P 1AYIA 1KQSO 2LOLA 2GZFA 4UHPB 2CWOA 2KORA 3OW2O 1CEIA 1RO0A 1QVGO 4U0FA 2FACA 1DNYA 2K93A 2M5RA 2FVEA 1VQNP 3EJBA 1VQOP 4H2XC 3CCLP 1NJIQ 2LL8A 1VQPP 3CD6P 2JO0A 5KP8B 2XZ0D 3I56P 3CPWO 2OARA 3DS5A 1YIJP 2PNGA 2PEJA 1VQLP 1A8OA 4BPFA 2EFJA 2K92A 2K0DX 4PWVB 1GXHA 1UNKA 5BS1A 1VQ6P 5F2NA 1M74A 2KGDA 3B4QA 2FADA 4DG9A 2N5HA 2LIWA 2LKIA 1VQ5P 3CCQP 2M8NA 3DS3A 2GZGA 1VQ4P 5BS2A 2KG8A 2EHSA 2KOOA 3LMOA 2L0QA 2L6EA 4NEOA 4PH1A 5KP7B 1VQ9P 1DV5A 4COPA 4IZ6A 4M0IA 1X3OA 1YHQP 3M1MA 3I55P
chains in the Genus database with same CATH topology
2QA4P 2E1MA 2OTJP 2JYLA 4XFXA 3CC2P 3DS0A 1KQSO 1QRJA 1AUMA 3G6EP 2EIAA 1VQ8P 4XRQA 1EIAA 1Q86Q 2CWOA 3OW2O 1EOQA 3DTJA 2QEXP 1K73Q 3HZQA 3G1IA 1M6EX 5JPAA 3DS1A 1KD1Q 1RO0A 1W2BO 2M8PA 3G1GA 1QVGO 4U0FA 1YI2P 1N8RQ 5DCKA 1KC8Q 2PEOA 1IUQA 1Q7YQ 1VQNP 1E6JP 1VQOP 3CCSP 2BHVA 1VQKP 1A43A 3DPHA 1M90Q 3G21A 3HYBA 3CCLP 3G28A 1NJIQ 3NTEA 2LF4A 1RO2A 3G71P 1Q82Q 1VQPP 1JJ2O 4U0CA 3CD6P 4GR2A 3VRLC 2KODA 4U0EA 3H47A 3CCJP 2JO0A 5I4TG 1RNIA 3H0DA 3I56P 4PH0A 5HGMA 5F2OA 2EG5A 3CPWO 3Q20A 3CMEP 2OARA 3DS5A 3MGEA 3CCRP 4U0BA 4WYMA 3B5IA 5HGLA 1Q81Q 3WBHA 3CC4P 1BAJA 5HGOA 1YIJP 3G26A 5F2KA 3G4SP 3G0VA 3CCUP 4XROA 2PEMA 2DGYA 3CXCO 3CMAP 1YJ9P 2PEJA 1VQLP 3G29A 3CC7P 1S72P 4IPYA 2PEQA 2PEKA 1A8OA 3P05A 2EFJA 2XXMA 2OTLP 3H4EA 2Z44A 1YITP 5BS1A 2XV6A 1VQ6P 5F2NA 3E2DA 1M74A 4U0DA 4XFYA 5HGNA 1YJNP 3LRYA 4GR6A 3CCVP 1ZMBA 2PENA 1QVFO 2Z46A 3DS2A 2M8LA 2PY8A 1K8AQ 2XT1A 2Z45A 2ONTA 4QNBA 3CCMP 1VQ5P 3CCQP 1M1KQ 3DS4A 1VQ7P 2BUOA 1M6NA 2M8NA 3DS3A 1VQ4P 4COCA 5BS2A 2JYGA 1K9MQ 1YJWP 1D1DA 2P9XA 4XFZA 2PEIA 1VQMP 4PH1A 2L6EA 1VQ9P 3RG6C 4COPA 4M0IA 1YHQP 3M1MA 3CCEP 3I55P 4U0AA 1K30A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HGO A;  3G26 A;  2M8L A;  2XT1 A;  3G0V A;  1E6J P;  2ONT A;  4U0A A;  2JYL A;  4XFX A;  4XRO A;  1A43 A;  3DS0 A;  4QNB A;  3DPH A;  3G21 A;  3G28 A;  3G29 A;  1QRJ A;  1AUM A;  3NTE A;  2LF4 A;  2EIA A;  3DS4 A;  2BUO A;  4XRQ A;  2M8N A;  4IPY A;  3DS3 A;  4U0C A;  3VRL C;  1EIA A;  2KOD A;  4U0E A;  3H47 A;  1A8O A;  3P05 A;  1EOQ A;  3DTJ A;  2JO0 A;  4COC A;  5I4T G;  2XXM A;  2JYG A;  3G1I A;  1D1D A;  3H4E A;  4XFZ A;  4PH0 A;  4PH1 A;  2L6E A;  3DS1 A;  5HGM A;  5JPA A;  4COP A;  2XV6 A;  2M8P A;  3G1G A;  4M0I A;  4XFY A;  3MGE A;  3DS5 A;  4U0D A;  5HGN A;  3LRY A;  4U0F A;  4U0B A;  4WYM A;  5HGL A;  3DS2 A;  5DCK A;  1BAJ A; 
#chains in the Genus database with same CATH topology
 2E1M A;  2FHS C;  1T8K A;  2GZE A;  2EIA A;  1HQB A;  3DTJ A;  1K73 Q;  3HZQ A;  2X2B A;  2JQ4 A;  1M6E X;  1KD1 Q;  1MZ8 A;  4F37 A;  2CNR A;  1IUQ A;  2PEO A;  1Q7Y Q;  1FR2 A;  1E6J P;  3CCS P;  1VQK P;  1A43 A;  3DPH A;  3G21 A;  1AF8 A;  1NQ4 A;  1L0H A;  1ACP A;  4U0E A;  1EMV A;  3H0D A;  4PH0 A;  5HGM A;  5F2O A;  1Z6M A;  1UJZ A;  3CE7 A;  3Q20 A;  2K0X A;  3MGE A;  1OR5 A;  4U0B A;  4WYM A;  4R0M A;  3U43 A;  3CC4 P;  1BAJ A;  4H2W C;  2KR5 A;  3CCU P;  4XRO A;  2LIU A;  2DGY A;  3CXC O;  3CMA P;  3CC7 P;  2AF8 A;  1S72 P;  1VKU A;  4IPY A;  2GDY A;  3RG2 A;  2OTL P;  4QKO A;  2LML A;  2KG6 A;  2XV6 A;  4XFY A;  3LRY A;  4GR6 A;  1QVF O;  2PEN A;  3DS2 A;  2KW2 A;  2N6Z A;  2JB0 A;  2PY8 A;  2Z45 A;  4QNB A;  1M1K Q;  2BUO A;  1M6N A;  1E0H A;  1K9M Q;  1YJW P;  1D1D A;  2MD9 A;  2N50 A;  3GKL C;  2QA4 P;  4HKG A;  1QRJ A;  1AUM A;  2DNW A;  2ROQ A;  1VQ8 P;  4XRQ A;  2MY5 A;  2KGC A;  4BPH A;  1Q86 Q;  1EOQ A;  2QEX P;  2K0Y A;  3DS1 A;  2KOQ A;  3G1G A;  4CA3 A;  2GDX A;  3NY7 B;  1N8R Q;  2MF4 A;  1KC8 Q;  3GJN A;  2N98 A;  7CEI A;  2GYK A;  3HYB A;  2LF4 A;  1JJ2 O;  4U0C A;  4GR2 A;  3VRL C;  1IMP A;  1RNI A;  2JGP A;  2AVA A;  2FVF A;  3CME P;  2VLO A;  3CCR P;  5HGL A;  2VLP A;  3WBH A;  3G26 A;  5F2K A;  3G0V A;  2FVA A;  2JAZ A;  4BPG A;  2KGE A;  3P05 A;  2N6Y A;  2XXM A;  2L9F A;  2K2Q A;  2MR8 A;  1HY8 A;  5EW5 E;  2ERH A;  3E2D A;  2KG9 A;  5HGN A;  1F80 D;  1ZMB A;  2JBG A;  2FAE A;  1KLP A;  2WPT A;  2XZ1 C;  1K8A Q;  2XT1 A;  2KOP A;  3DS4 A;  1L0I A;  2VSQ A;  2FQ2 A;  2QNW A;  4COC A;  2VLQ A;  2L4B A;  4XFZ A;  1VQM P;  5KP6 B;  3RG6 C;  3GZL A;  1VHN A;  4U0A A;  1K30 A;  5HVC A;  2OTJ P;  2JYL A;  5EJD A;  3DS0 A;  3G6E P;  1EIA A;  2KWL A;  3G1I A;  1GPJ A;  5HV8 A;  5JPA A;  2M8P A;  1YI2 P;  5DCK A;  2CG5 B;  2FQ1 A;  2NO8 A;  2BHV A;  2K94 A;  1M90 Q;  2CGQ A;  3G28 A;  3NTE A;  1RO2 A;  3G71 P;  1Q82 Q;  2CQ8 A;  2KOD A;  1GXG A;  3H47 A;  3CCJ P;  5I4T G;  2EG5 A;  2N5I A;  2AFE A;  2JU1 A;  2FQ0 A;  3B5I A;  1Q81 Q;  3EJD A;  5HGO A;  2MVU A;  3G4S P;  2PEM A;  1YJ9 P;  1ZNV A;  2EHT A;  3G29 A;  2MR7 A;  2KOS A;  2PEQ A;  2PEK A;  3GZM A;  2GZJ A;  4PXH B;  2VLN A;  4MRT C;  3H4E A;  2Z44 A;  1YIT P;  2LTE A;  2GDW A;  2L22 A;  4U0D A;  1YJN P;  3CCV P;  2Z46 A;  2M8L A;  2ONT A;  3CCM P;  2AFD A;  2JU2 A;  1VQ7 P;  2K5X A;  2LPK A;  2JYG A;  3EJE A;  2P9X A;  1BXI A;  2PEI A;  1IMQ A;  3CCE P;  2MVV A;  5CZD B;  1W2B O;  2KGA A;  2GZI A;  4H2Y C;  4XFX A;  3CC2 P;  1AYI A;  1KQS O;  2LOL A;  2GZF A;  4UHP B;  2CWO A;  2KOR A;  3OW2 O;  1CEI A;  1RO0 A;  1QVG O;  4U0F A;  2FAC A;  1DNY A;  2K93 A;  2M5R A;  2FVE A;  1VQN P;  3EJB A;  1VQO P;  4H2X C;  3CCL P;  1NJI Q;  2LL8 A;  1VQP P;  3CD6 P;  2JO0 A;  5KP8 B;  2XZ0 D;  3I56 P;  3CPW O;  2OAR A;  3DS5 A;  1YIJ P;  2PNG A;  2PEJ A;  1VQL P;  1A8O A;  4BPF A;  2EFJ A;  2K92 A;  2K0D X;  4PWV B;  1GXH A;  1UNK A;  5BS1 A;  1VQ6 P;  5F2N A;  1M74 A;  2KGD A;  3B4Q A;  2FAD A;  4DG9 A;  2N5H A;  2LIW A;  2LKI A;  1VQ5 P;  3CCQ P;  2M8N A;  3DS3 A;  2GZG A;  1VQ4 P;  5BS2 A;  2KG8 A;  2EHS A;  2KOO A;  3LMO A;  2L0Q A;  2L6E A;  4NEO A;  4PH1 A;  5KP7 B;  1VQ9 P;  1DV5 A;  4COP A;  4IZ6 A;  4M0I A;  1X3O A;  1YHQ P;  3M1M A;  3I55 P; 
#chains in the Genus database with same CATH homology
 2QA4 P;  2E1M A;  2OTJ P;  2JYL A;  4XFX A;  3CC2 P;  3DS0 A;  1KQS O;  1QRJ A;  1AUM A;  3G6E P;  2EIA A;  1VQ8 P;  4XRQ A;  1EIA A;  1Q86 Q;  2CWO A;  3OW2 O;  1EOQ A;  3DTJ A;  2QEX P;  1K73 Q;  3HZQ A;  3G1I A;  1M6E X;  5JPA A;  3DS1 A;  1KD1 Q;  1RO0 A;  1W2B O;  2M8P A;  3G1G A;  1QVG O;  4U0F A;  1YI2 P;  1N8R Q;  5DCK A;  1KC8 Q;  2PEO A;  1IUQ A;  1Q7Y Q;  1VQN P;  1E6J P;  1VQO P;  3CCS P;  2BHV A;  1VQK P;  1A43 A;  3DPH A;  1M90 Q;  3G21 A;  3HYB A;  3CCL P;  3G28 A;  1NJI Q;  3NTE A;  2LF4 A;  1RO2 A;  3G71 P;  1Q82 Q;  1VQP P;  1JJ2 O;  4U0C A;  3CD6 P;  4GR2 A;  3VRL C;  2KOD A;  4U0E A;  3H47 A;  3CCJ P;  2JO0 A;  5I4T G;  1RNI A;  3H0D A;  3I56 P;  4PH0 A;  5HGM A;  5F2O A;  2EG5 A;  3CPW O;  3Q20 A;  3CME P;  2OAR A;  3DS5 A;  3MGE A;  3CCR P;  4U0B A;  4WYM A;  3B5I A;  5HGL A;  1Q81 Q;  3WBH A;  3CC4 P;  1BAJ A;  5HGO A;  1YIJ P;  3G26 A;  5F2K A;  3G4S P;  3G0V A;  3CCU P;  4XRO A;  2PEM A;  2DGY A;  3CXC O;  3CMA P;  1YJ9 P;  2PEJ A;  1VQL P;  3G29 A;  3CC7 P;  1S72 P;  4IPY A;  2PEQ A;  2PEK A;  1A8O A;  3P05 A;  2EFJ A;  2XXM A;  2OTL P;  3H4E A;  2Z44 A;  1YIT P;  5BS1 A;  2XV6 A;  1VQ6 P;  5F2N A;  3E2D A;  1M74 A;  4U0D A;  4XFY A;  5HGN A;  1YJN P;  3LRY A;  4GR6 A;  3CCV P;  1ZMB A;  2PEN A;  1QVF O;  2Z46 A;  3DS2 A;  2M8L A;  2PY8 A;  1K8A Q;  2XT1 A;  2Z45 A;  2ONT A;  4QNB A;  3CCM P;  1VQ5 P;  3CCQ P;  1M1K Q;  3DS4 A;  1VQ7 P;  2BUO A;  1M6N A;  2M8N A;  3DS3 A;  1VQ4 P;  4COC A;  5BS2 A;  2JYG A;  1K9M Q;  1YJW P;  1D1D A;  2P9X A;  4XFZ A;  2PEI A;  1VQM P;  4PH1 A;  2L6E A;  1VQ9 P;  3RG6 C;  4COP A;  4M0I A;  1YHQ P;  3M1M A;  3CCE P;  3I55 P;  4U0A A;  1K30 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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