2JYGA

Solution structure of the w184a/m185a mutant of the carboxy-terminal dimerization domain of the hiv-1 capsid protein
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
84
structure length
84
Chain Sequence
TSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords Capsid protein p24 (CA)
publication title Solution Structure of a Double Mutant of the Carboxy-Terminal Dimerization Domain of the HIV-1 Capsid Protein.
pubmed doi rcsb
source organism Human immunodeficiency virus 1
total genus 16
structure length 84
sequence length 84
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2007-12-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2jygA00
4WYMA 1A8OA 4U0EA 3DS3A 4U0FA 2M8LA 4PH1A 4COCA 3G26A 4M0IA 4IPYA 3G28A 3DS1A 2JYGA 3DS5A 3DS0A 5HGNA 4U0AA 2L6EA 5HGOA 1BAJA 2EIAA 3H47A 1A43A 2JYLA 1EOQA 2M8PA 3G1IA 2KODA 3H4EA 3NTEA 3P05A 2LF4A 2XT1A 3G0VA 3DTJA 3G1GA 2XV6A 2JO0A 1D1DA 1EIAA 2XXMA 3LRYA 5HGMA 4U0BA 4XFZA 4QNBA 4COPA 3DPHA 3G29A 5DCKA 5JPAA 4XRQA 1E6JP 5HGLA 2BUOA 1AUMA 3G21A 4U0DA 4XFXA 3DS4A 3MGEA 1QRJA 4XROA 3VRLC 4PH0A 5I4TG 3DS2A 2M8NA 2ONTA 4U0CA 4XFYA
chains in the Genus database with same CATH superfamily
2VLNA 3NY7B 2KOSA 3Q20A 1VQ7P 3DS0A 1W2BO 2VSQA 1BXIA 2AFDA 1X3OA 5KP8B 1K8AQ 3LRYA 2K0DX 1OR5A 4WYMA 2KGCA 3CMEP 2KGDA 4GR6A 5CZDB 2GDYA 2M8PA 3CCLP 2X2BA 1VQ5P 1VKUA 5HGLA 2FVAA 3CCVP 2FQ2A 3G4SP 4CA3A 3DS2A 4R0MA 3CCRP 5BS2A 4PWVB 4U0CA 1M74A 1QVFO 2N6YA 1Q81Q 2KR5A 3H0DA 1S72P 1GXGA 1HY8A 3CC7P 2XZ1C 2JU1A 2DNWA 5EJDA 1UNKA 2XXMA 2LOLA 1F80D 5HGMA 2FACA 1ACPA 4HKGA 2GZJA 3LMOA 2MVUA 3DS3A 2JQ4A 2OTJP 2PEMA 2AF8A 1BAJA 2LTEA 3CPWO 3I56P 3P05A 2FQ1A 2KOOA 3CXCO 4XFZA 3G71P 2PEJA 2L0QA 3G21A 3MGEA 4NEOA 2GZIA 2BHVA 2EFJA 2AVAA 4U0AA 2L6EA 3CCJP 2JYLA 2CWOA 3G1GA 3G0VA 3DTJA 1D1DA 1RO0A 2KG9A 1VQOP 1VQPP 1Q82Q 1VQ9P 1T8KA 2JB0A 4U0FA 1YIJP 2KG6A 2FAEA 3CCUP 2EIAA 2FVFA 2JBGA 3CCMP 4QKOA 2XV6A 2JO0A 2PEOA 1YJNP 1JJ2O 7CEIA 2WPTA 2LPKA 2OTLP 1E6JP 2KORA 2MY5A 4IPYA 4DG9A 4PXHB 2MD9A 2KODA 2GZFA 1KD1Q 3CC4P 1VQNP 2VLQA 1YJ9P 2CGQA 3GJNA 2KW2A 2MVVA 3EJBA 2GYKA 3M1MA 2K0XA 2Z45A 1KC8Q 4UHPB 3GZLA 2QEXP 2GDXA 2PEKA 2K94A 2JAZA 2MR8A 1DNYA 2LF4A 2L4BA 5F2KA 2N50A 2VLPA 3CE7A 1YI2P 1AUMA 3VRLC 3DS4A 1YJWP 2M8NA 4BPHA 2M5RA 3CCEP 2NO8A 2PY8A 2JU2A 3DS5A 2N6ZA 1YHQP 2FHSC 1IMQA 2FQ0A 2QA4P 2KG8A 2LIUA 3CD6P 3H4EA 3NTEA 1EIAA 2GZEA 1QVGO 2EHSA 3E2DA 2EG5A 2N98A 2LMLA 5F2OA 3CC2P 4U0EA 1MZ8A 4M0IA 1AYIA 1IMPA 2JYGA 1VQKP 5HVCA 3B5IA 3CMAP 3H47A 3RG6C 3GZMA 4H2XC 2K92A 2FVEA 3DPHA 2EHTA 5KP6B 2BUOA 4IZ6A 1M6NA 4XROA 4H2YC 1QRJA 2K93A 5F2NA 2PEQA 1NJIQ 4COCA 4PH1A 1NQ4A 3G28A 3DS1A 5EW5E 2LKIA 3I55P 3B4QA 1KLPA 1RNIA 2L22A 4COPA 1M90Q 4MRTC 3GKLC 1ZMBA 1VQLP 2K5XA 3RG2A 4BPFA 1Z6MA 4F37A 1IUQA 1VHNA 1M1KQ 2QNWA 1N8RQ 1E0HA 3HZQA 5HV8A 2GZGA 2KWLA 3CCSP 2OARA 2K0YA 3G29A 5JPAA 4XRQA 1K73Q 4PH0A 2K2QA 3EJDA 4XFYA 1HQBA 2M8LA 2Z44A 3HYBA 4GR2A 2KGAA 1EOQA 1DV5A 2JGPA 2FADA 4BPGA 2N5HA 1VQ8P 2ERHA 4U0DA 3CCQP 1Q7YQ 2CQ8A 1A8OA 2CNRA 2E1MA 1EMVA 2AFEA 2GDWA 5HGNA 1YITP 2ROQA 2VLOA 2MF4A 4XFXA 2MR7A 3G6EP 1Q86Q 1AF8A 1K9MQ 1FR2A 2PEIA 3G26A 2LL8A 5KP7B 1K30A 5HGOA 1CEIA 1L0IA 4H2WC 2L9FA 2LIWA 2P9XA 2PENA 2Z46A 1GXHA 1GPJA 3WBHA 2KGEA 2PNGA 1RO2A 1VQ6P 5I4TG 2ONTA 2XZ0D 1VQ4P 1UJZA 1M6EX 1A43A 3OW2O 3EJEA 2N5IA 5BS1A 2DGYA 3G1IA 2XT1A 1VQMP 2KOQA 1ZNVA 4U0BA 4QNBA 1L0HA 5DCKA 1KQSO 3U43A 2CG5B 2KOPA
chains in the Genus database with same CATH topology
2BHVA 3CCEP 2EFJA 2M8LA 2Z44A 2PY8A 3Q20A 3HYBA 1VQ7P 4GR2A 3DS0A 3DS5A 4U0AA 2L6EA 1YHQP 1W2BO 3CCJP 2JYLA 1EOQA 2QA4P 2CWOA 3CD6P 3H4EA 3NTEA 3G1GA 3G0VA 3DTJA 1D1DA 1RO0A 1VQOP 1EIAA 1K8AQ 1QVGO 3LRYA 1VQPP 3E2DA 2EG5A 1VQ8P 5F2OA 4U0DA 1Q82Q 1VQ9P 3CCQP 1Q7YQ 3CC2P 4WYMA 1A8OA 4U0EA 4GR6A 4U0FA 1YIJP 2E1MA 3CMEP 4M0IA 5HGNA 2JYGA 1VQKP 1YITP 3B5IA 3CMAP 3CCUP 2EIAA 3H47A 3RG6C 2M8PA 3CCLP 3CCMP 2XV6A 2JO0A 2PEOA 1YJNP 1JJ2O 1VQ5P 3DPHA 2OTLP 1E6JP 5HGLA 2BUOA 1M6NA 3CCVP 4XFXA 4XROA 3G4SP 1QRJA 1Q86Q 3DS2A 5F2NA 3G6EP 3CCRP 5BS2A 4U0CA 2PEQA 1M74A 1QVFO 1K9MQ 1NJIQ 2PEIA 4COCA 4PH1A 3G26A 4IPYA 3G28A 3DS1A 1Q81Q 1K30A 5HGOA 3H0DA 1S72P 3I55P 3CC7P 2KODA 1KD1Q 1RNIA 3CC4P 1VQNP 2P9XA 2PENA 2XXMA 1YJ9P 2Z46A 5HGMA 3WBHA 4COPA 1M90Q 1RO2A 1VQ6P 1ZMBA 5I4TG 1VQLP 2ONTA 3M1MA 2Z45A 3DS3A 1IUQA 1VQ4P 1KC8Q 2OTJP 1M1KQ 1M6EX 2QEXP 2PEMA 1BAJA 2PEKA 1A43A 3OW2O 3CPWO 5BS1A 2DGYA 3G1IA 3I56P 3P05A 2LF4A 1N8RQ 2XT1A 1VQMP 5F2KA 3HZQA 3CXCO 3CCSP 2OARA 4U0BA 4XFZA 4QNBA 3G71P 3G29A 5DCKA 5JPAA 4XRQA 1YI2P 1K73Q 2PEJA 1KQSO 1AUMA 3G21A 3VRLC 3DS4A 3MGEA 4PH0A 1YJWP 2M8NA 4XFYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WYM A;  1A8O A;  4U0E A;  3DS3 A;  4U0F A;  2M8L A;  4PH1 A;  4COC A;  3G26 A;  4M0I A;  4IPY A;  3G28 A;  3DS1 A;  2JYG A;  3DS5 A;  3DS0 A;  5HGN A;  4U0A A;  2L6E A;  5HGO A;  1BAJ A;  2EIA A;  3H47 A;  1A43 A;  2JYL A;  1EOQ A;  2M8P A;  3G1I A;  2KOD A;  3H4E A;  3NTE A;  3P05 A;  2LF4 A;  2XT1 A;  3G0V A;  3DTJ A;  3G1G A;  2XV6 A;  2JO0 A;  1D1D A;  1EIA A;  2XXM A;  3LRY A;  5HGM A;  4U0B A;  4XFZ A;  4QNB A;  4COP A;  3DPH A;  3G29 A;  5DCK A;  5JPA A;  4XRQ A;  1E6J P;  5HGL A;  2BUO A;  1AUM A;  3G21 A;  4U0D A;  4XFX A;  3DS4 A;  3MGE A;  1QRJ A;  4XRO A;  3VRL C;  4PH0 A;  5I4T G;  3DS2 A;  2M8N A;  2ONT A;  4U0C A;  4XFY A; 
#chains in the Genus database with same CATH topology
 2VLN A;  3NY7 B;  2KOS A;  3Q20 A;  1VQ7 P;  3DS0 A;  1W2B O;  2VSQ A;  1BXI A;  2AFD A;  1X3O A;  5KP8 B;  1K8A Q;  3LRY A;  2K0D X;  1OR5 A;  4WYM A;  2KGC A;  3CME P;  2KGD A;  4GR6 A;  5CZD B;  2GDY A;  2M8P A;  3CCL P;  2X2B A;  1VQ5 P;  1VKU A;  5HGL A;  2FVA A;  3CCV P;  2FQ2 A;  3G4S P;  4CA3 A;  3DS2 A;  4R0M A;  3CCR P;  5BS2 A;  4PWV B;  4U0C A;  1M74 A;  1QVF O;  2N6Y A;  1Q81 Q;  2KR5 A;  3H0D A;  1S72 P;  1GXG A;  1HY8 A;  3CC7 P;  2XZ1 C;  2JU1 A;  2DNW A;  5EJD A;  1UNK A;  2XXM A;  2LOL A;  1F80 D;  5HGM A;  2FAC A;  1ACP A;  4HKG A;  2GZJ A;  3LMO A;  2MVU A;  3DS3 A;  2JQ4 A;  2OTJ P;  2PEM A;  2AF8 A;  1BAJ A;  2LTE A;  3CPW O;  3I56 P;  3P05 A;  2FQ1 A;  2KOO A;  3CXC O;  4XFZ A;  3G71 P;  2PEJ A;  2L0Q A;  3G21 A;  3MGE A;  4NEO A;  2GZI A;  2BHV A;  2EFJ A;  2AVA A;  4U0A A;  2L6E A;  3CCJ P;  2JYL A;  2CWO A;  3G1G A;  3G0V A;  3DTJ A;  1D1D A;  1RO0 A;  2KG9 A;  1VQO P;  1VQP P;  1Q82 Q;  1VQ9 P;  1T8K A;  2JB0 A;  4U0F A;  1YIJ P;  2KG6 A;  2FAE A;  3CCU P;  2EIA A;  2FVF A;  2JBG A;  3CCM P;  4QKO A;  2XV6 A;  2JO0 A;  2PEO A;  1YJN P;  1JJ2 O;  7CEI A;  2WPT A;  2LPK A;  2OTL P;  1E6J P;  2KOR A;  2MY5 A;  4IPY A;  4DG9 A;  4PXH B;  2MD9 A;  2KOD A;  2GZF A;  1KD1 Q;  3CC4 P;  1VQN P;  2VLQ A;  1YJ9 P;  2CGQ A;  3GJN A;  2KW2 A;  2MVV A;  3EJB A;  2GYK A;  3M1M A;  2K0X A;  2Z45 A;  1KC8 Q;  4UHP B;  3GZL A;  2QEX P;  2GDX A;  2PEK A;  2K94 A;  2JAZ A;  2MR8 A;  1DNY A;  2LF4 A;  2L4B A;  5F2K A;  2N50 A;  2VLP A;  3CE7 A;  1YI2 P;  1AUM A;  3VRL C;  3DS4 A;  1YJW P;  2M8N A;  4BPH A;  2M5R A;  3CCE P;  2NO8 A;  2PY8 A;  2JU2 A;  3DS5 A;  2N6Z A;  1YHQ P;  2FHS C;  1IMQ A;  2FQ0 A;  2QA4 P;  2KG8 A;  2LIU A;  3CD6 P;  3H4E A;  3NTE A;  1EIA A;  2GZE A;  1QVG O;  2EHS A;  3E2D A;  2EG5 A;  2N98 A;  2LML A;  5F2O A;  3CC2 P;  4U0E A;  1MZ8 A;  4M0I A;  1AYI A;  1IMP A;  2JYG A;  1VQK P;  5HVC A;  3B5I A;  3CMA P;  3H47 A;  3RG6 C;  3GZM A;  4H2X C;  2K92 A;  2FVE A;  3DPH A;  2EHT A;  5KP6 B;  2BUO A;  4IZ6 A;  1M6N A;  4XRO A;  4H2Y C;  1QRJ A;  2K93 A;  5F2N A;  2PEQ A;  1NJI Q;  4COC A;  4PH1 A;  1NQ4 A;  3G28 A;  3DS1 A;  5EW5 E;  2LKI A;  3I55 P;  3B4Q A;  1KLP A;  1RNI A;  2L22 A;  4COP A;  1M90 Q;  4MRT C;  3GKL C;  1ZMB A;  1VQL P;  2K5X A;  3RG2 A;  4BPF A;  1Z6M A;  4F37 A;  1IUQ A;  1VHN A;  1M1K Q;  2QNW A;  1N8R Q;  1E0H A;  3HZQ A;  5HV8 A;  2GZG A;  2KWL A;  3CCS P;  2OAR A;  2K0Y A;  3G29 A;  5JPA A;  4XRQ A;  1K73 Q;  4PH0 A;  2K2Q A;  3EJD A;  4XFY A;  1HQB A;  2M8L A;  2Z44 A;  3HYB A;  4GR2 A;  2KGA A;  1EOQ A;  1DV5 A;  2JGP A;  2FAD A;  4BPG A;  2N5H A;  1VQ8 P;  2ERH A;  4U0D A;  3CCQ P;  1Q7Y Q;  2CQ8 A;  1A8O A;  2CNR A;  2E1M A;  1EMV A;  2AFE A;  2GDW A;  5HGN A;  1YIT P;  2ROQ A;  2VLO A;  2MF4 A;  4XFX A;  2MR7 A;  3G6E P;  1Q86 Q;  1AF8 A;  1K9M Q;  1FR2 A;  2PEI A;  3G26 A;  2LL8 A;  5KP7 B;  1K30 A;  5HGO A;  1CEI A;  1L0I A;  4H2W C;  2L9F A;  2LIW A;  2P9X A;  2PEN A;  2Z46 A;  1GXH A;  1GPJ A;  3WBH A;  2KGE A;  2PNG A;  1RO2 A;  1VQ6 P;  5I4T G;  2ONT A;  2XZ0 D;  1VQ4 P;  1UJZ A;  1M6E X;  1A43 A;  3OW2 O;  3EJE A;  2N5I A;  5BS1 A;  2DGY A;  3G1I A;  2XT1 A;  1VQM P;  2KOQ A;  1ZNV A;  4U0B A;  4QNB A;  1L0H A;  5DCK A;  1KQS O;  3U43 A;  2CG5 B;  2KOP A; 
#chains in the Genus database with same CATH homology
 2BHV A;  3CCE P;  2EFJ A;  2M8L A;  2Z44 A;  2PY8 A;  3Q20 A;  3HYB A;  1VQ7 P;  4GR2 A;  3DS0 A;  3DS5 A;  4U0A A;  2L6E A;  1YHQ P;  1W2B O;  3CCJ P;  2JYL A;  1EOQ A;  2QA4 P;  2CWO A;  3CD6 P;  3H4E A;  3NTE A;  3G1G A;  3G0V A;  3DTJ A;  1D1D A;  1RO0 A;  1VQO P;  1EIA A;  1K8A Q;  1QVG O;  3LRY A;  1VQP P;  3E2D A;  2EG5 A;  1VQ8 P;  5F2O A;  4U0D A;  1Q82 Q;  1VQ9 P;  3CCQ P;  1Q7Y Q;  3CC2 P;  4WYM A;  1A8O A;  4U0E A;  4GR6 A;  4U0F A;  1YIJ P;  2E1M A;  3CME P;  4M0I A;  5HGN A;  2JYG A;  1VQK P;  1YIT P;  3B5I A;  3CMA P;  3CCU P;  2EIA A;  3H47 A;  3RG6 C;  2M8P A;  3CCL P;  3CCM P;  2XV6 A;  2JO0 A;  2PEO A;  1YJN P;  1JJ2 O;  1VQ5 P;  3DPH A;  2OTL P;  1E6J P;  5HGL A;  2BUO A;  1M6N A;  3CCV P;  4XFX A;  4XRO A;  3G4S P;  1QRJ A;  1Q86 Q;  3DS2 A;  5F2N A;  3G6E P;  3CCR P;  5BS2 A;  4U0C A;  2PEQ A;  1M74 A;  1QVF O;  1K9M Q;  1NJI Q;  2PEI A;  4COC A;  4PH1 A;  3G26 A;  4IPY A;  3G28 A;  3DS1 A;  1Q81 Q;  1K30 A;  5HGO A;  3H0D A;  1S72 P;  3I55 P;  3CC7 P;  2KOD A;  1KD1 Q;  1RNI A;  3CC4 P;  1VQN P;  2P9X A;  2PEN A;  2XXM A;  1YJ9 P;  2Z46 A;  5HGM A;  3WBH A;  4COP A;  1M90 Q;  1RO2 A;  1VQ6 P;  1ZMB A;  5I4T G;  1VQL P;  2ONT A;  3M1M A;  2Z45 A;  3DS3 A;  1IUQ A;  1VQ4 P;  1KC8 Q;  2OTJ P;  1M1K Q;  1M6E X;  2QEX P;  2PEM A;  1BAJ A;  2PEK A;  1A43 A;  3OW2 O;  3CPW O;  5BS1 A;  2DGY A;  3G1I A;  3I56 P;  3P05 A;  2LF4 A;  1N8R Q;  2XT1 A;  1VQM P;  5F2K A;  3HZQ A;  3CXC O;  3CCS P;  2OAR A;  4U0B A;  4XFZ A;  4QNB A;  3G71 P;  3G29 A;  5DCK A;  5JPA A;  4XRQ A;  1YI2 P;  1K73 Q;  2PEJ A;  1KQS O;  1AUM A;  3G21 A;  3VRL C;  3DS4 A;  3MGE A;  4PH0 A;  1YJW P;  2M8N A;  4XFY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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