2JYGA

Solution structure of the w184a/m185a mutant of the carboxy-terminal dimerization domain of the hiv-1 capsid protein
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
84
structure length
84
Chain Sequence
TSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Capsid protein p24 (CA)
publication title Solution Structure of a Double Mutant of the Carboxy-Terminal Dimerization Domain of the HIV-1 Capsid Protein.
pubmed doi rcsb
source organism Human immunodeficiency virus 1
molecule tags Viral protein
total genus 16
structure length 84
sequence length 84
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2007-12-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2jygA00
3G28A 3G1GA 3DS0A 4U0DA 5I4TG 3DPHA 4XFYA 4WYMA 4XROA 3G21A 3P05A 4QNBA 5HGLA 2JYLA 3H4EA 5JPAA 3G0VA 4COPA 2KODA 3LRYA 5HGNA 2EIAA 2M8PA 1QRJA 2JYGA 2LF4A 3MGEA 3G1IA 1D1DA 3DS3A 1EIAA 4PH1A 4U0AA 2ONTA 1A8OA 2XV6A 1BAJA 1A43A 4U0BA 3H47A 3DS4A 3NTEA 4XFXA 4IPYA 4PH0A 3G26A 3DS2A 2L6EA 3DTJA 4XFZA 4U0FA 2JO0A 2XXMA 3DS1A 3G29A 4U0CA 5DCKA 5HGOA 1AUMA 3VRLC 2BUOA 4U0EA 5HGMA 2M8NA 3DS5A 2M8LA 1EOQA 4COCA 4XRQA 4M0IA 2XT1A 1E6JP
chains in the Genus database with same CATH superfamily
3CCUP 3U43A 2QEXP 2FAEA 2DNWA 1X3OA 3B5IA 4GR6A 3G0VA 2K94A 3H0DA 2Z45A 1IUQA 2DGYA 2JB0A 2ONTA 5HV8A 1VKUA 1KD1Q 2EFJA 1VQMP 2XXMA 2KGDA 5CZDB 1T8KA 2LMLA 4XRQA 2MVUA 1HQBA 3P05A 2K2QA 1OR5A 4PXHB 2FACA 1A8OA 3H47A 5KP6B 1ZMBA 2OTLP 2FHSC 2K0DX 4U0EA 1M90Q 4U0BA 2N6ZA 3HYBA 2KG8A 2GDYA 3RG2A 2NO8A 2OARA 2LIUA 1E0HA 2CGQA 2ROQA 1DNYA 1HY8A 2LTEA 4H2YC 5BS1A 1K73Q 4BPGA 5F2OA 4QNBA 2L0QA 2JQ4A 3LRYA 2PEJA 2LOLA 1L0HA 4PH1A 2K5XA 2FQ0A 2VLOA 2MVVA 2MD9A 3EJEA 3CCLP 2CQ8A 2VLPA 5KP8B 1E6JP 4U0DA 3DS0A 2FVEA 2EHTA 3CC7P 2Z46A 1GXHA 3GJNA 2KOOA 2GZEA 1Q7YQ 3CXCO 2N98A 2CWOA 3GZMA 3LMOA 2AFDA 2WPTA 3DS2A 4PWVB 1M74A 4H2WC 1KC8Q 2L9FA 3DS5A 1VHNA 5HVCA 2LIWA 3CMEP 4XROA 2GZJA 3Q20A 1QVFO 2FQ2A 2N5HA 3G1IA 2MF4A 3E2DA 2GYKA 4MRTC 1K9MQ 2PEQA 1EMVA 1VQLP 2AVAA 2EHSA 2KODA 1RNIA 3CMAP 3CE7A 1AYIA 1A43A 2XZ0D 2N6YA 5F2NA 2PNGA 5KP7B 1AUMA 2KGEA 1DV5A 2CG5B 1GXGA 2MY5A 2JYLA 3GKLC 3H4EA 5JPAA 4GR2A 3CD6P 3B4QA 3OW2O 2FADA 2KWLA 2VSQA 1GPJA 3CCRP 4PH0A 2L6EA 1L0IA 3CCVP 5BS2A 2MR8A 2FVAA 2FQ1A 2QA4P 1NJIQ 2N50A 5F2KA 2KG6A 2JYGA 2PY8A 3MGEA 2KOQA 3NY7B 1N8RQ 2CNRA 2LKIA 4XFXA 1S72P 2K93A 4IZ6A 2M5RA 2JO0A 2JU2A 3CC2P 2M8LA 2N5IA 2GDXA 4COCA 3G1GA 1VQOP 3CCJP 1VQ6P 4CA3A 3CCEP 2M8PA 2JAZA 1UJZA 1EIAA 7CEIA 2XV6A 2GDWA 1Z6MA 1VQ4P 2K0YA 4XFZA 3RG6C 3CPWO 1M1KQ 2PEKA 2GZFA 3G28A 2KR5A 2MR7A 3G21A 5HGLA 4DG9A 4H2XC 1QVGO 1KLPA 1VQPP 2ERHA 5DCKA 5HGOA 1YJ9P 1M6EX 1CEIA 1YIJP 5EJDA 1NQ4A 4F37A 2XZ1C 2GZIA 2LF4A 2JGPA 1D1DA 1K8AQ 5EW5E 2BHVA 1AF8A 1YI2P 3G26A 3CCSP 1Q86Q 4UHPB 2KG9A 4U0FA 3WBHA 3DS1A 2FVFA 4U0CA 2BUOA 5I4TG 3DPHA 1VQ9P 1K30A 2PEIA 1Q82Q 2JBGA 4QKOA 2LL8A 1BAJA 2PENA 1ZNVA 4IPYA 2AF8A 4BPFA 3M1MA 1VQ5P 2OTJP 2PEMA 2XT1A 4NEOA 2KW2A 3I56P 2GZGA 4XFYA 2VLQA 1KQSO 4HKGA 3EJBA 5HGNA 2EIAA 1QRJA 1F80D 1BXIA 4BPHA 1VQ8P 1YJWP 1VQKP 1ACPA 2KOPA 3NTEA 2JU1A 2QNWA 2EG5A 1YITP 3HZQA 1Q81Q 2KGCA 1M6NA 1MZ8A 3G29A 2PEOA 3VRLC 5HGMA 2M8NA 1EOQA 2L22A 2KOSA 4WYMA 3I55P 2K0XA 2K92A 1RO0A 1YHQP 1RO2A 3G71P 2E1MA 2AFEA 2L4BA 1VQNP 2VLNA 3G4SP 1IMPA 1JJ2O 2P9XA 3DS4A 1UNKA 3CCMP 2KGAA 3EJDA 3CCQP 4M0IA 1IMQA 3CC4P 2KORA 4COPA 3G6EP 1VQ7P 3GZLA 4R0MA 2LPKA 3DS3A 4U0AA 2X2BA 1FR2A 3DTJA 1W2BO 1YJNP 2Z44A
chains in the Genus database with same CATH topology
4U0DA 5I4TG 3DS0A 3CCUP 2QA4P 1NJIQ 3DPHA 2QEXP 1VQ9P 1K30A 3CC7P 2Z46A 5F2KA 3B5IA 2PEIA 4GR6A 3G0VA 1Q7YQ 1Q82Q 3H0DA 2JYGA 2PY8A 3MGEA 3CXCO 2Z45A 1N8RQ 1IUQA 2DGYA 2CWOA 2ONTA 1BAJA 2PENA 4XFXA 4IPYA 1S72P 1KD1Q 3M1MA 2EFJA 3DS2A 1VQ5P 1M74A 1VQMP 2JO0A 2XXMA 2OTJP 3CC2P 2PEMA 2M8LA 1KC8Q 3DS5A 4COCA 2XT1A 4XRQA 3G1GA 3I56P 4XFYA 1VQOP 3CCJP 3CMEP 4XROA 3P05A 1VQ6P 1KQSO 3Q20A 3CCEP 1QVFO 5HGNA 2EIAA 2M8PA 1QRJA 3G1IA 1EIAA 1VQ8P 1A8OA 2XV6A 1YJWP 3E2DA 1VQKP 1VQ4P 3H47A 3NTEA 2EG5A 1YITP 1ZMBA 3HZQA 1Q81Q 4XFZA 3RG6C 1M6NA 2OTLP 3G29A 3CPWO 1K9MQ 2PEOA 3VRLC 2PEQA 4U0EA 2PEKA 2M8NA 5HGMA 1M1KQ 1EOQA 1M90Q 4U0BA 3G28A 1VQLP 4WYMA 3I55P 3G21A 1RO0A 5HGLA 3HYBA 1YHQP 1RO2A 2KODA 1RNIA 3G71P 3CMAP 2E1MA 1VQNP 1QVGO 3G4SP 1A43A 1JJ2O 2P9XA 3DS4A 2OARA 1VQPP 5F2NA 3CCMP 5DCKA 5HGOA 1AUMA 1YJ9P 1M6EX 5BS1A 1K73Q 3CCQP 4M0IA 5F2OA 1YIJP 3CC4P 4QNBA 2JYLA 3H4EA 5JPAA 4COPA 3LRYA 4GR2A 3G6EP 2PEJA 1VQ7P 3CD6P 2LF4A 3OW2O 1D1DA 1K8AQ 3DS3A 4PH1A 4U0AA 2BHVA 3CCRP 4PH0A 1YI2P 3G26A 2L6EA 3CCSP 1Q86Q 3DTJA 3CCLP 4U0FA 3WBHA 3DS1A 4U0CA 1YJNP 1W2BO 2Z44A 2BUOA 3CCVP 5BS2A 1E6JP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G28 A;  3G1G A;  3DS0 A;  4U0D A;  5I4T G;  3DPH A;  4XFY A;  4WYM A;  4XRO A;  3G21 A;  3P05 A;  4QNB A;  5HGL A;  2JYL A;  3H4E A;  5JPA A;  3G0V A;  4COP A;  2KOD A;  3LRY A;  5HGN A;  2EIA A;  2M8P A;  1QRJ A;  2JYG A;  2LF4 A;  3MGE A;  3G1I A;  1D1D A;  3DS3 A;  1EIA A;  4PH1 A;  4U0A A;  2ONT A;  1A8O A;  2XV6 A;  1BAJ A;  1A43 A;  4U0B A;  3H47 A;  3DS4 A;  3NTE A;  4XFX A;  4IPY A;  4PH0 A;  3G26 A;  3DS2 A;  2L6E A;  3DTJ A;  4XFZ A;  4U0F A;  2JO0 A;  2XXM A;  3DS1 A;  3G29 A;  4U0C A;  5DCK A;  5HGO A;  1AUM A;  3VRL C;  2BUO A;  4U0E A;  5HGM A;  2M8N A;  3DS5 A;  2M8L A;  1EOQ A;  4COC A;  4XRQ A;  4M0I A;  2XT1 A;  1E6J P; 
#chains in the Genus database with same CATH topology
 3CCU P;  3U43 A;  2QEX P;  2FAE A;  2DNW A;  1X3O A;  3B5I A;  4GR6 A;  3G0V A;  2K94 A;  3H0D A;  2Z45 A;  1IUQ A;  2DGY A;  2JB0 A;  2ONT A;  5HV8 A;  1VKU A;  1KD1 Q;  2EFJ A;  1VQM P;  2XXM A;  2KGD A;  5CZD B;  1T8K A;  2LML A;  4XRQ A;  2MVU A;  1HQB A;  3P05 A;  2K2Q A;  1OR5 A;  4PXH B;  2FAC A;  1A8O A;  3H47 A;  5KP6 B;  1ZMB A;  2OTL P;  2FHS C;  2K0D X;  4U0E A;  1M90 Q;  4U0B A;  2N6Z A;  3HYB A;  2KG8 A;  2GDY A;  3RG2 A;  2NO8 A;  2OAR A;  2LIU A;  1E0H A;  2CGQ A;  2ROQ A;  1DNY A;  1HY8 A;  2LTE A;  4H2Y C;  5BS1 A;  1K73 Q;  4BPG A;  5F2O A;  4QNB A;  2L0Q A;  2JQ4 A;  3LRY A;  2PEJ A;  2LOL A;  1L0H A;  4PH1 A;  2K5X A;  2FQ0 A;  2VLO A;  2MVV A;  2MD9 A;  3EJE A;  3CCL P;  2CQ8 A;  2VLP A;  5KP8 B;  1E6J P;  4U0D A;  3DS0 A;  2FVE A;  2EHT A;  3CC7 P;  2Z46 A;  1GXH A;  3GJN A;  2KOO A;  2GZE A;  1Q7Y Q;  3CXC O;  2N98 A;  2CWO A;  3GZM A;  3LMO A;  2AFD A;  2WPT A;  3DS2 A;  4PWV B;  1M74 A;  4H2W C;  1KC8 Q;  2L9F A;  3DS5 A;  1VHN A;  5HVC A;  2LIW A;  3CME P;  4XRO A;  2GZJ A;  3Q20 A;  1QVF O;  2FQ2 A;  2N5H A;  3G1I A;  2MF4 A;  3E2D A;  2GYK A;  4MRT C;  1K9M Q;  2PEQ A;  1EMV A;  1VQL P;  2AVA A;  2EHS A;  2KOD A;  1RNI A;  3CMA P;  3CE7 A;  1AYI A;  1A43 A;  2XZ0 D;  2N6Y A;  5F2N A;  2PNG A;  5KP7 B;  1AUM A;  2KGE A;  1DV5 A;  2CG5 B;  1GXG A;  2MY5 A;  2JYL A;  3GKL C;  3H4E A;  5JPA A;  4GR2 A;  3CD6 P;  3B4Q A;  3OW2 O;  2FAD A;  2KWL A;  2VSQ A;  1GPJ A;  3CCR P;  4PH0 A;  2L6E A;  1L0I A;  3CCV P;  5BS2 A;  2MR8 A;  2FVA A;  2FQ1 A;  2QA4 P;  1NJI Q;  2N50 A;  5F2K A;  2KG6 A;  2JYG A;  2PY8 A;  3MGE A;  2KOQ A;  3NY7 B;  1N8R Q;  2CNR A;  2LKI A;  4XFX A;  1S72 P;  2K93 A;  4IZ6 A;  2M5R A;  2JO0 A;  2JU2 A;  3CC2 P;  2M8L A;  2N5I A;  2GDX A;  4COC A;  3G1G A;  1VQO P;  3CCJ P;  1VQ6 P;  4CA3 A;  3CCE P;  2M8P A;  2JAZ A;  1UJZ A;  1EIA A;  7CEI A;  2XV6 A;  2GDW A;  1Z6M A;  1VQ4 P;  2K0Y A;  4XFZ A;  3RG6 C;  3CPW O;  1M1K Q;  2PEK A;  2GZF A;  3G28 A;  2KR5 A;  2MR7 A;  3G21 A;  5HGL A;  4DG9 A;  4H2X C;  1QVG O;  1KLP A;  1VQP P;  2ERH A;  5DCK A;  5HGO A;  1YJ9 P;  1M6E X;  1CEI A;  1YIJ P;  5EJD A;  1NQ4 A;  4F37 A;  2XZ1 C;  2GZI A;  2LF4 A;  2JGP A;  1D1D A;  1K8A Q;  5EW5 E;  2BHV A;  1AF8 A;  1YI2 P;  3G26 A;  3CCS P;  1Q86 Q;  4UHP B;  2KG9 A;  4U0F A;  3WBH A;  3DS1 A;  2FVF A;  4U0C A;  2BUO A;  5I4T G;  3DPH A;  1VQ9 P;  1K30 A;  2PEI A;  1Q82 Q;  2JBG A;  4QKO A;  2LL8 A;  1BAJ A;  2PEN A;  1ZNV A;  4IPY A;  2AF8 A;  4BPF A;  3M1M A;  1VQ5 P;  2OTJ P;  2PEM A;  2XT1 A;  4NEO A;  2KW2 A;  3I56 P;  2GZG A;  4XFY A;  2VLQ A;  1KQS O;  4HKG A;  3EJB A;  5HGN A;  2EIA A;  1QRJ A;  1F80 D;  1BXI A;  4BPH A;  1VQ8 P;  1YJW P;  1VQK P;  1ACP A;  2KOP A;  3NTE A;  2JU1 A;  2QNW A;  2EG5 A;  1YIT P;  3HZQ A;  1Q81 Q;  2KGC A;  1M6N A;  1MZ8 A;  3G29 A;  2PEO A;  3VRL C;  5HGM A;  2M8N A;  1EOQ A;  2L22 A;  2KOS A;  4WYM A;  3I55 P;  2K0X A;  2K92 A;  1RO0 A;  1YHQ P;  1RO2 A;  3G71 P;  2E1M A;  2AFE A;  2L4B A;  1VQN P;  2VLN A;  3G4S P;  1IMP A;  1JJ2 O;  2P9X A;  3DS4 A;  1UNK A;  3CCM P;  2KGA A;  3EJD A;  3CCQ P;  4M0I A;  1IMQ A;  3CC4 P;  2KOR A;  4COP A;  3G6E P;  1VQ7 P;  3GZL A;  4R0M A;  2LPK A;  3DS3 A;  4U0A A;  2X2B A;  1FR2 A;  3DTJ A;  1W2B O;  1YJN P;  2Z44 A; 
#chains in the Genus database with same CATH homology
 4U0D A;  5I4T G;  3DS0 A;  3CCU P;  2QA4 P;  1NJI Q;  3DPH A;  2QEX P;  1VQ9 P;  1K30 A;  3CC7 P;  2Z46 A;  5F2K A;  3B5I A;  2PEI A;  4GR6 A;  3G0V A;  1Q7Y Q;  1Q82 Q;  3H0D A;  2JYG A;  2PY8 A;  3MGE A;  3CXC O;  2Z45 A;  1N8R Q;  1IUQ A;  2DGY A;  2CWO A;  2ONT A;  1BAJ A;  2PEN A;  4XFX A;  4IPY A;  1S72 P;  1KD1 Q;  3M1M A;  2EFJ A;  3DS2 A;  1VQ5 P;  1M74 A;  1VQM P;  2JO0 A;  2XXM A;  2OTJ P;  3CC2 P;  2PEM A;  2M8L A;  1KC8 Q;  3DS5 A;  4COC A;  2XT1 A;  4XRQ A;  3G1G A;  3I56 P;  4XFY A;  1VQO P;  3CCJ P;  3CME P;  4XRO A;  3P05 A;  1VQ6 P;  1KQS O;  3Q20 A;  3CCE P;  1QVF O;  5HGN A;  2EIA A;  2M8P A;  1QRJ A;  3G1I A;  1EIA A;  1VQ8 P;  1A8O A;  2XV6 A;  1YJW P;  3E2D A;  1VQK P;  1VQ4 P;  3H47 A;  3NTE A;  2EG5 A;  1YIT P;  1ZMB A;  3HZQ A;  1Q81 Q;  4XFZ A;  3RG6 C;  1M6N A;  2OTL P;  3G29 A;  3CPW O;  1K9M Q;  2PEO A;  3VRL C;  2PEQ A;  4U0E A;  2PEK A;  2M8N A;  5HGM A;  1M1K Q;  1EOQ A;  1M90 Q;  4U0B A;  3G28 A;  1VQL P;  4WYM A;  3I55 P;  3G21 A;  1RO0 A;  5HGL A;  3HYB A;  1YHQ P;  1RO2 A;  2KOD A;  1RNI A;  3G71 P;  3CMA P;  2E1M A;  1VQN P;  1QVG O;  3G4S P;  1A43 A;  1JJ2 O;  2P9X A;  3DS4 A;  2OAR A;  1VQP P;  5F2N A;  3CCM P;  5DCK A;  5HGO A;  1AUM A;  1YJ9 P;  1M6E X;  5BS1 A;  1K73 Q;  3CCQ P;  4M0I A;  5F2O A;  1YIJ P;  3CC4 P;  4QNB A;  2JYL A;  3H4E A;  5JPA A;  4COP A;  3LRY A;  4GR2 A;  3G6E P;  2PEJ A;  1VQ7 P;  3CD6 P;  2LF4 A;  3OW2 O;  1D1D A;  1K8A Q;  3DS3 A;  4PH1 A;  4U0A A;  2BHV A;  3CCR P;  4PH0 A;  1YI2 P;  3G26 A;  2L6E A;  3CCS P;  1Q86 Q;  3DTJ A;  3CCL P;  4U0F A;  3WBH A;  3DS1 A;  4U0C A;  1YJN P;  1W2B O;  2Z44 A;  2BUO A;  3CCV P;  5BS2 A;  1E6J P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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