1A8OA

Hiv capsid c-terminal domain
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
70
structure length
70
Chain Sequence
MDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords HIV CAPSID
publication title Structure of the carboxyl-terminal dimerization domain of the HIV-1 capsid protein.
pubmed doi rcsb
source organism Human immunodeficiency virus 1
total genus 22
structure length 70
sequence length 70
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 1998-03-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 1a8oA00
1BAJA 3DPHA 3DS1A 3P05A 1A43A 2JYLA 3DS3A 4WYMA 4XFYA 2XT1A 4PH0A 2XV6A 3H47A 3G1IA 4XFXA 4COCA 1E6JP 4U0BA 2EIAA 3NTEA 4XRQA 1D1DA 4PH1A 4U0AA 4COPA 5JPAA 3G28A 3DS4A 5DCKA 4IPYA 3G29A 4U0EA 4XROA 4M0IA 4U0FA 3H4EA 1A8OA 3DS2A 2XXMA 2L6EA 3G21A 1AUMA 2ONTA 3G26A 5I4TG 2LF4A 2M8NA 2JO0A 3DTJA 2JYGA 3DS5A 2M8PA 3G0VA 4QNBA 5HGOA 1QRJA 2BUOA 1EIAA 2KODA 3G1GA 3LRYA 4U0DA 5HGMA 1EOQA 4U0CA 4XFZA 3DS0A 5HGNA 3VRLC 3MGEA 2M8LA 5HGLA
chains in the Genus database with same CATH superfamily
1RNIA 4PXHB 1W2BO 1VQLP 2N98A 4BPFA 1VQKP 2K2QA 1BXIA 2ERHA 4U0AA 1DV5A 1FR2A 2N6ZA 3G29A 2XXMA 3CPWO 4CA3A 5EJDA 2OTJP 2JYGA 1S72P 2KG6A 5HGNA 4PWVB 3CMAP 1IMQA 2JU2A 2JYLA 2KGDA 4WYMA 2PENA 2N50A 7CEIA 3NTEA 4IPYA 4U0EA 2FACA 1AUMA 1VQOP 2LF4A 5F2OA 5HGOA 1N8RQ 2K5XA 3NY7B 2K93A 2L9FA 5F2NA 4R0MA 2JQ4A 2VLOA 3EJEA 4DG9A 1EMVA 2CQ8A 2L0QA 2VLQA 1M1KQ 3HYBA 2N5HA 2K0DX 5EW5E 2FVEA 3MGEA 2PEKA 1YJNP 2JBGA 2LPKA 1YHQP 2L22A 1YIJP 3CMEP 3CCLP 1JJ2O 1AYIA 4M0IA 3CCJP 1HY8A 2N5IA 1K9MQ 3CCSP 3G0VA 2LOLA 2GDWA 2BUOA 2BHVA 1VQ5P 3E2DA 1RO0A 1UJZA 5HV8A 1Z6MA 3DS3A 2KOQA 5HVCA 2K0YA 4COCA 4XFXA 2GZEA 2M5RA 4PH1A 2LIUA 4COPA 2JAZA 1Q86Q 3B4QA 2KG8A 3G26A 4QNBA 2OARA 1VQ8P 1EIAA 2KODA 4NEOA 4IZ6A 2KWLA 2CNRA 3DS1A 2QNWA 1Q7YQ 4QKOA 5KP7B 2N6YA 3CC7P 1Q82Q 1KLPA 3CCRP 3EJDA 2PNGA 4BPHA 2LTEA 2GYKA 2KGAA 2JU1A 2KW2A 2EG5A 1X3OA 3P05A 3GZMA 2FAEA 1E6JP 2EIAA 2KOPA 1KD1Q 2FVAA 3RG2A 1VHNA 3CCVP 1UNKA 1IMPA 2Z46A 5KP6B 2PY8A 3GZLA 2XT1A 1YI2P 1M6EX 2MVVA 1QVGO 1GPJA 5BS1A 2MD9A 3I56P 5HGMA 4U0CA 1AF8A 1CEIA 1VQNP 2AVAA 4XFYA 4PH0A 2AFDA 3CCMP 2PEOA 3CD6P 2E1MA 2CWOA 2MF4A 5KP8B 2GZFA 2L6EA 3G21A 2EHTA 1DNYA 2FVFA 1EOQA 2LL8A 3EJBA 1VQ7P 3RG6C 1BAJA 2AF8A 3GKLC 1T8KA 2LKIA 4U0BA 5BS2A 3B5IA 3H4EA 4GR2A 3I55P 3LMOA 2JO0A 1QRJA 1L0IA 3M1MA 1ZNVA 3DS0A 2GDXA 2Z44A 2JGPA 3DPHA 1M6NA 1VKUA 1VQMP 2KG9A 1IUQA 4H2WC 4H2XC 1YJWP 4XROA 1HQBA 2JB0A 3DS2A 1VQ9P 2KR5A 3CCQP 1ZMBA 2M8NA 2GZGA 1ACPA 3DS5A 1K73Q 3CC4P 2Z45A 3VRLC 2KGEA 2MVUA 3G6EP 3Q20A 2FHSC 3H47A 5CZDB 2KOSA 4XRQA 2PEJA 3G28A 3H0DA 2K92A 4HKGA 1A8OA 1VQPP 1K8AQ 1VQ4P 1RO2A 3G1GA 2GDYA 1YJ9P 4BPGA 2MR7A 4UHPB 1QVFO 1VQ6P 2KORA 2MY5A 2DNWA 2XZ1C 2KOOA 2LMLA 2AFEA 3WBHA 1MZ8A 2FQ1A 2ONTA 3OW2O 2LIWA 5I4TG 2M8PA 5F2KA 3HZQA 4U0DA 2MR8A 5HGLA 2X2BA 2CG5B 1D1DA 2GZJA 1E0HA 2NO8A 3G71P 2PEMA 2DGYA 4GR6A 1Q81Q 2VSQA 2OTLP 3G4SP 2CGQA 2EHSA 2K0XA 2FQ2A 2EFJA 3LRYA 1OR5A 2ROQA 2QEXP 1YITP 1GXHA 2PEIA 1A43A 2VLNA 4MRTC 1M74A 3CCUP 2PEQA 5JPAA 2K94A 3DS4A 1KQSO 1NQ4A 2VLPA 2XZ0D 1F80D 2FADA 1NJIQ 4H2YC 3DTJA 1GXGA 2WPTA 4XFZA 3GJNA 1M90Q 3CCEP 3CC2P 1KC8Q 2XV6A 2GZIA 3G1IA 1L0HA 2L4BA 3U43A 2KGCA 5DCKA 3CXCO 4U0FA 4F37A 2P9XA 2QA4P 1K30A 2FQ0A 2M8LA 3CE7A
chains in the Genus database with same CATH topology
1VQNP 4XFYA 3DS3A 1QVFO 1VQ6P 1RNIA 4PH0A 3CCMP 4COCA 4XFXA 1W2BO 1VQLP 1VQKP 2PEOA 4PH1A 4U0AA 4COPA 3CD6P 3WBHA 2E1MA 3G29A 1Q86Q 2CWOA 2XXMA 2L6EA 3G21A 2ONTA 3CPWO 3OW2O 3G26A 5I4TG 2OTJP 2JYGA 2M8PA 4QNBA 1S72P 2OARA 1VQ8P 1EIAA 2KODA 5F2KA 3HZQA 4U0DA 1EOQA 5HGNA 3CMAP 1VQ7P 5HGLA 1BAJA 3RG6C 3DS1A 2JYLA 4WYMA 2PENA 1Q7YQ 1D1DA 4U0BA 3NTEA 5BS2A 3G71P 2PEMA 4IPYA 3B5IA 4U0EA 2DGYA 4GR6A 1Q81Q 3H4EA 2OTLP 3G4SP 4GR2A 3I55P 3CC7P 1Q82Q 1AUMA 1VQOP 3CCRP 2LF4A 2JO0A 5F2OA 5HGOA 3M1MA 1QRJA 1N8RQ 2EFJA 3LRYA 3DS0A 2QEXP 1YITP 2EG5A 2Z44A 3DPHA 2PEIA 3P05A 1A43A 1M6NA 1VQMP 5F2NA 1E6JP 1M74A 2EIAA 3CCUP 2PEQA 1IUQA 5JPAA 3DS4A 1KQSO 1KD1Q 1YJWP 4XROA 3DS2A 1VQ9P 3CCQP 3CCVP 1M1KQ 1ZMBA 3HYBA 1NJIQ 2M8NA 3DTJA 3DS5A 2Z46A 1K73Q 3CC4P 2Z45A 4XFZA 3VRLC 3MGEA 2PY8A 2PEKA 1YJNP 1M90Q 3CCEP 3G6EP 1YHQP 3CC2P 2XT1A 3Q20A 1YI2P 1KC8Q 2XV6A 3H47A 3G1IA 4XRQA 1YIJP 3CMEP 1M6EX 2PEJA 3G28A 5DCKA 3CXCO 3CCLP 3H0DA 1JJ2O 4M0IA 4U0FA 1A8OA 1QVGO 3CCJP 1VQPP 1K8AQ 5BS1A 1K9MQ 3CCSP 3G0VA 2P9XA 2QA4P 1K30A 1VQ4P 2BUOA 1RO2A 3G1GA 3I56P 2BHVA 1VQ5P 5HGMA 4U0CA 3E2DA 1YJ9P 2M8LA 1RO0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BAJ A;  3DPH A;  3DS1 A;  3P05 A;  1A43 A;  2JYL A;  3DS3 A;  4WYM A;  4XFY A;  2XT1 A;  4PH0 A;  2XV6 A;  3H47 A;  3G1I A;  4XFX A;  4COC A;  1E6J P;  4U0B A;  2EIA A;  3NTE A;  4XRQ A;  1D1D A;  4PH1 A;  4U0A A;  4COP A;  5JPA A;  3G28 A;  3DS4 A;  5DCK A;  4IPY A;  3G29 A;  4U0E A;  4XRO A;  4M0I A;  4U0F A;  3H4E A;  1A8O A;  3DS2 A;  2XXM A;  2L6E A;  3G21 A;  1AUM A;  2ONT A;  3G26 A;  5I4T G;  2LF4 A;  2M8N A;  2JO0 A;  3DTJ A;  2JYG A;  3DS5 A;  2M8P A;  3G0V A;  4QNB A;  5HGO A;  1QRJ A;  2BUO A;  1EIA A;  2KOD A;  3G1G A;  3LRY A;  4U0D A;  5HGM A;  1EOQ A;  4U0C A;  4XFZ A;  3DS0 A;  5HGN A;  3VRL C;  3MGE A;  2M8L A;  5HGL A; 
#chains in the Genus database with same CATH topology
 1RNI A;  4PXH B;  1W2B O;  1VQL P;  2N98 A;  4BPF A;  1VQK P;  2K2Q A;  1BXI A;  2ERH A;  4U0A A;  1DV5 A;  1FR2 A;  2N6Z A;  3G29 A;  2XXM A;  3CPW O;  4CA3 A;  5EJD A;  2OTJ P;  2JYG A;  1S72 P;  2KG6 A;  5HGN A;  4PWV B;  3CMA P;  1IMQ A;  2JU2 A;  2JYL A;  2KGD A;  4WYM A;  2PEN A;  2N50 A;  7CEI A;  3NTE A;  4IPY A;  4U0E A;  2FAC A;  1AUM A;  1VQO P;  2LF4 A;  5F2O A;  5HGO A;  1N8R Q;  2K5X A;  3NY7 B;  2K93 A;  2L9F A;  5F2N A;  4R0M A;  2JQ4 A;  2VLO A;  3EJE A;  4DG9 A;  1EMV A;  2CQ8 A;  2L0Q A;  2VLQ A;  1M1K Q;  3HYB A;  2N5H A;  2K0D X;  5EW5 E;  2FVE A;  3MGE A;  2PEK A;  1YJN P;  2JBG A;  2LPK A;  1YHQ P;  2L22 A;  1YIJ P;  3CME P;  3CCL P;  1JJ2 O;  1AYI A;  4M0I A;  3CCJ P;  1HY8 A;  2N5I A;  1K9M Q;  3CCS P;  3G0V A;  2LOL A;  2GDW A;  2BUO A;  2BHV A;  1VQ5 P;  3E2D A;  1RO0 A;  1UJZ A;  5HV8 A;  1Z6M A;  3DS3 A;  2KOQ A;  5HVC A;  2K0Y A;  4COC A;  4XFX A;  2GZE A;  2M5R A;  4PH1 A;  2LIU A;  4COP A;  2JAZ A;  1Q86 Q;  3B4Q A;  2KG8 A;  3G26 A;  4QNB A;  2OAR A;  1VQ8 P;  1EIA A;  2KOD A;  4NEO A;  4IZ6 A;  2KWL A;  2CNR A;  3DS1 A;  2QNW A;  1Q7Y Q;  4QKO A;  5KP7 B;  2N6Y A;  3CC7 P;  1Q82 Q;  1KLP A;  3CCR P;  3EJD A;  2PNG A;  4BPH A;  2LTE A;  2GYK A;  2KGA A;  2JU1 A;  2KW2 A;  2EG5 A;  1X3O A;  3P05 A;  3GZM A;  2FAE A;  1E6J P;  2EIA A;  2KOP A;  1KD1 Q;  2FVA A;  3RG2 A;  1VHN A;  3CCV P;  1UNK A;  1IMP A;  2Z46 A;  5KP6 B;  2PY8 A;  3GZL A;  2XT1 A;  1YI2 P;  1M6E X;  2MVV A;  1QVG O;  1GPJ A;  5BS1 A;  2MD9 A;  3I56 P;  5HGM A;  4U0C A;  1AF8 A;  1CEI A;  1VQN P;  2AVA A;  4XFY A;  4PH0 A;  2AFD A;  3CCM P;  2PEO A;  3CD6 P;  2E1M A;  2CWO A;  2MF4 A;  5KP8 B;  2GZF A;  2L6E A;  3G21 A;  2EHT A;  1DNY A;  2FVF A;  1EOQ A;  2LL8 A;  3EJB A;  1VQ7 P;  3RG6 C;  1BAJ A;  2AF8 A;  3GKL C;  1T8K A;  2LKI A;  4U0B A;  5BS2 A;  3B5I A;  3H4E A;  4GR2 A;  3I55 P;  3LMO A;  2JO0 A;  1QRJ A;  1L0I A;  3M1M A;  1ZNV A;  3DS0 A;  2GDX A;  2Z44 A;  2JGP A;  3DPH A;  1M6N A;  1VKU A;  1VQM P;  2KG9 A;  1IUQ A;  4H2W C;  4H2X C;  1YJW P;  4XRO A;  1HQB A;  2JB0 A;  3DS2 A;  1VQ9 P;  2KR5 A;  3CCQ P;  1ZMB A;  2M8N A;  2GZG A;  1ACP A;  3DS5 A;  1K73 Q;  3CC4 P;  2Z45 A;  3VRL C;  2KGE A;  2MVU A;  3G6E P;  3Q20 A;  2FHS C;  3H47 A;  5CZD B;  2KOS A;  4XRQ A;  2PEJ A;  3G28 A;  3H0D A;  2K92 A;  4HKG A;  1A8O A;  1VQP P;  1K8A Q;  1VQ4 P;  1RO2 A;  3G1G A;  2GDY A;  1YJ9 P;  4BPG A;  2MR7 A;  4UHP B;  1QVF O;  1VQ6 P;  2KOR A;  2MY5 A;  2DNW A;  2XZ1 C;  2KOO A;  2LML A;  2AFE A;  3WBH A;  1MZ8 A;  2FQ1 A;  2ONT A;  3OW2 O;  2LIW A;  5I4T G;  2M8P A;  5F2K A;  3HZQ A;  4U0D A;  2MR8 A;  5HGL A;  2X2B A;  2CG5 B;  1D1D A;  2GZJ A;  1E0H A;  2NO8 A;  3G71 P;  2PEM A;  2DGY A;  4GR6 A;  1Q81 Q;  2VSQ A;  2OTL P;  3G4S P;  2CGQ A;  2EHS A;  2K0X A;  2FQ2 A;  2EFJ A;  3LRY A;  1OR5 A;  2ROQ A;  2QEX P;  1YIT P;  1GXH A;  2PEI A;  1A43 A;  2VLN A;  4MRT C;  1M74 A;  3CCU P;  2PEQ A;  5JPA A;  2K94 A;  3DS4 A;  1KQS O;  1NQ4 A;  2VLP A;  2XZ0 D;  1F80 D;  2FAD A;  1NJI Q;  4H2Y C;  3DTJ A;  1GXG A;  2WPT A;  4XFZ A;  3GJN A;  1M90 Q;  3CCE P;  3CC2 P;  1KC8 Q;  2XV6 A;  2GZI A;  3G1I A;  1L0H A;  2L4B A;  3U43 A;  2KGC A;  5DCK A;  3CXC O;  4U0F A;  4F37 A;  2P9X A;  2QA4 P;  1K30 A;  2FQ0 A;  2M8L A;  3CE7 A; 
#chains in the Genus database with same CATH homology
 1VQN P;  4XFY A;  3DS3 A;  1QVF O;  1VQ6 P;  1RNI A;  4PH0 A;  3CCM P;  4COC A;  4XFX A;  1W2B O;  1VQL P;  1VQK P;  2PEO A;  4PH1 A;  4U0A A;  4COP A;  3CD6 P;  3WBH A;  2E1M A;  3G29 A;  1Q86 Q;  2CWO A;  2XXM A;  2L6E A;  3G21 A;  2ONT A;  3CPW O;  3OW2 O;  3G26 A;  5I4T G;  2OTJ P;  2JYG A;  2M8P A;  4QNB A;  1S72 P;  2OAR A;  1VQ8 P;  1EIA A;  2KOD A;  5F2K A;  3HZQ A;  4U0D A;  1EOQ A;  5HGN A;  3CMA P;  1VQ7 P;  5HGL A;  1BAJ A;  3RG6 C;  3DS1 A;  2JYL A;  4WYM A;  2PEN A;  1Q7Y Q;  1D1D A;  4U0B A;  3NTE A;  5BS2 A;  3G71 P;  2PEM A;  4IPY A;  3B5I A;  4U0E A;  2DGY A;  4GR6 A;  1Q81 Q;  3H4E A;  2OTL P;  3G4S P;  4GR2 A;  3I55 P;  3CC7 P;  1Q82 Q;  1AUM A;  1VQO P;  3CCR P;  2LF4 A;  2JO0 A;  5F2O A;  5HGO A;  3M1M A;  1QRJ A;  1N8R Q;  2EFJ A;  3LRY A;  3DS0 A;  2QEX P;  1YIT P;  2EG5 A;  2Z44 A;  3DPH A;  2PEI A;  3P05 A;  1A43 A;  1M6N A;  1VQM P;  5F2N A;  1E6J P;  1M74 A;  2EIA A;  3CCU P;  2PEQ A;  1IUQ A;  5JPA A;  3DS4 A;  1KQS O;  1KD1 Q;  1YJW P;  4XRO A;  3DS2 A;  1VQ9 P;  3CCQ P;  3CCV P;  1M1K Q;  1ZMB A;  3HYB A;  1NJI Q;  2M8N A;  3DTJ A;  3DS5 A;  2Z46 A;  1K73 Q;  3CC4 P;  2Z45 A;  4XFZ A;  3VRL C;  3MGE A;  2PY8 A;  2PEK A;  1YJN P;  1M90 Q;  3CCE P;  3G6E P;  1YHQ P;  3CC2 P;  2XT1 A;  3Q20 A;  1YI2 P;  1KC8 Q;  2XV6 A;  3H47 A;  3G1I A;  4XRQ A;  1YIJ P;  3CME P;  1M6E X;  2PEJ A;  3G28 A;  5DCK A;  3CXC O;  3CCL P;  3H0D A;  1JJ2 O;  4M0I A;  4U0F A;  1A8O A;  1QVG O;  3CCJ P;  1VQP P;  1K8A Q;  5BS1 A;  1K9M Q;  3CCS P;  3G0V A;  2P9X A;  2QA4 P;  1K30 A;  1VQ4 P;  2BUO A;  1RO2 A;  3G1G A;  3I56 P;  2BHV A;  1VQ5 P;  5HGM A;  4U0C A;  3E2D A;  1YJ9 P;  2M8L A;  1RO0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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