3GJNA

Following evolutionary paths to high affinity and selectivity protein-protein interactions using colicin7 and immunity proteins
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
82
structure length
82
Chain Sequence
KHSISDYTEAEFLQLVTTICDAEATSEEELDKLITHFEEMTEHPSGSDLIYWPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Escherichia coli
publication title Following evolutionary paths to protein-protein interactions with high affinity and selectivity
pubmed doi rcsb
molecule keywords Colicin-E9 immunity protein
total genus 27
structure length 82
sequence length 82
chains with identical sequence D
ec nomenclature
pdb deposition date 2009-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 3gjnA00
2ERHA 4QKOA 2JBGA 2VLPA 3GJNA 2WPTA 3GKLC 7CEIA 1BXIA 2K5XA 1IMPA 2GZEA 2JAZA 3U43A 1UJZA 1GXHA 1UNKA 1CEIA 2VLNA 4UHPB 5EW5E 2VLQA 1MZ8A 2JB0A 1AYIA 2GZIA 2GYKA 1IMQA 2GZGA 1ZNVA 2NO8A 2GZJA 1EMVA 4F37A 2K0DX 1FR2A 1E0HA 1GXGA 2VLOA 2GZFA
chains in the Genus database with same CATH superfamily
3HZQA 1HQBA 1VQNP 1VQOP 2JAZA 2JO0A 2N5IA 2KOSA 1JJ2O 2GYKA 2N5HA 2LOLA 2M5RA 1M6EX 5DCKA 2OARA 3CC2P 2FVEA 2FQ0A 3EJDA 3I56P 3GJNA 4WYMA 3CCUP 2EFJA 3LRYA 2PEOA 1K8AQ 2PNGA 3GZLA 3CC4P 3DS1A 3CCMP 1E6JP 1YJNP 2KWLA 2KGEA 1YJ9P 2N98A 2JBGA 1N8RQ 4PH1A 2MY5A 2KOQA 2K92A 2XXMA 2PENA 1L0HA 3NY7B 2XV6A 2K94A 1ZNVA 1L0IA 2GZFA 2FQ2A 2KGDA 1DNYA 1UJZA 2K93A 1EIAA 2KG8A 2FACA 2QA4P 1RO2A 2LPKA 3CPWO 5HVCA 3DPHA 3G28A 3MGEA 2LIUA 4CA3A 4R0MA 1T8KA 2EHTA 1E0HA 5HGOA 1IUQA 5CZDB 2ONTA 2GDYA 1QVGO 1KD1Q 3H0DA 3CCJP 3B5IA 2KR5A 4QNBA 2L4BA 2X2BA 4XFZA 2PEJA 1ACPA 2M8LA 2PEMA 3B4QA 2EHSA 2N50A 1K9MQ 1K30A 4XROA 1YI2P 1VQ4P 2FHSC 2VLNA 1OR5A 2VLQA 2JU1A 2OTLP 1RNIA 3G21A 2KGCA 3I55P 4H2YC 2GZJA 4F37A 5BS2A 3CXCO 2AFDA 3DS0A 3EJEA 3CC7P 2EIAA 2VLOA 2PEQA 2DGYA 4BPGA 1YITP 1S72P 2QEXP 1KC8Q 2AVAA 1Q86Q 2M8PA 4IZ6A 2MR7A 1M1KQ 4GR6A 2GZIA 3G6EP 1RO0A 3CCLP 5HGMA 1EMVA 2LL8A 4M0IA 3RG2A 2MD9A 4PH0A 2KORA 4U0FA 3G71P 5KP7B 1CEIA 3DS2A 3CCVP 2CG5B 1VQ9P 1Z6MA 5HV8A 5HGLA 2MVUA 5F2OA 2L9FA 2BHVA 1EOQA 2Z46A 3GZMA 2FVFA 1GXGA 2ERHA 2BUOA 3GKLC 2OTJP 1VKUA 2CNRA 4NEOA 2MR8A 4U0BA 2KW2A 2JYLA 2LMLA 2Z44A 3DS5A 4U0DA 2M8NA 2JGPA 2XZ0D 1VQ5P 2JU2A 4MRTC 1D1DA 2GDXA 1KLPA 3CD6P 1VQLP 3HYBA 1Q82Q 3CMAP 2E1MA 2K0XA 2L6EA 2XT1A 1AYIA 2N6YA 3H47A 2KODA 1VHNA 3DS4A 2FVAA 1QVFO 2KOOA 4BPFA 3LMOA 3Q20A 1M6NA 4QKOA 1DV5A 3M1MA 1M74A 4HKGA 3U43A 5HGNA 5BS1A 3CCEP 1VQKP 5I4TG 4H2XC 2L22A 1ZMBA 4COCA 3G26A 2WPTA 4U0EA 3OW2O 3CCQP 4XRQA 1F80D 2Z45A 2PY8A 5EW5E 4IPYA 2ROQA 1VQMP 2GZGA 2KG9A 3CCRP 2KOPA 1FR2A 2PEIA 3CCSP 2JQ4A 4DG9A 3E2DA 2JYGA 1GXHA 3WBHA 2CQ8A 3G1IA 2LTEA 1YIJP 3CE7A 2L0QA 4U0AA 2QNWA 4PXHB 1VQ8P 2K2QA 2K0DX 4XFYA 1VQ6P 4COPA 2EG5A 1BAJA 3P05A 1A8OA 2VLPA 1VQPP 2N6ZA 2AFEA 1IMPA 1QRJA 1UNKA 3G1GA 1MZ8A 2KGAA 5KP8B 5KP6B 1NJIQ 5F2KA 2LKIA 3DTJA 2XZ1C 1YJWP 3DS3A 3NTEA 4H2WC 2MF4A 2CWOA 1A43A 2FAEA 3H4EA 2LF4A 5F2NA 2AF8A 5JPAA 4PWVB 3G29A 2GZEA 3VRLC 4BPHA 1KQSO 4UHPB 1NQ4A 3CMEP 1W2BO 2JB0A 2VSQA 1K73Q 2GDWA 4GR2A 2P9XA 3RG6C 2K0YA 2LIWA 3G4SP 1YHQP 5EJDA 1HY8A 1AUMA 7CEIA 1BXIA 2K5XA 1X3OA 2MVVA 2PEKA 4XFXA 3EJBA 3G0VA 2FADA 1VQ7P 2KG6A 1Q7YQ 1AF8A 1IMQA 2FQ1A 1GPJA 2NO8A 2CGQA 1M90Q 1Q81Q 2DNWA 4U0CA
chains in the Genus database with same CATH topology
2ERHA 4QKOA 2JBGA 2VLPA 3GJNA 2WPTA 3GKLC 7CEIA 1BXIA 2K5XA 1IMPA 2GZEA 2JAZA 3U43A 1UJZA 1GXHA 1UNKA 1CEIA 2VLNA 4UHPB 5EW5E 2VLQA 1MZ8A 2JB0A 1AYIA 2GZIA 2GYKA 1IMQA 2GZGA 1ZNVA 2NO8A 2GZJA 1EMVA 4F37A 2K0DX 1FR2A 1E0HA 1GXGA 2VLOA 2GZFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ERH A;  4QKO A;  2JBG A;  2VLP A;  3GJN A;  2WPT A;  3GKL C;  7CEI A;  1BXI A;  2K5X A;  1IMP A;  2GZE A;  2JAZ A;  3U43 A;  1UJZ A;  1GXH A;  1UNK A;  1CEI A;  2VLN A;  4UHP B;  5EW5 E;  2VLQ A;  1MZ8 A;  2JB0 A;  1AYI A;  2GZI A;  2GYK A;  1IMQ A;  2GZG A;  1ZNV A;  2NO8 A;  2GZJ A;  1EMV A;  4F37 A;  2K0D X;  1FR2 A;  1E0H A;  1GXG A;  2VLO A;  2GZF A; 
#chains in the Genus database with same CATH topology
 3HZQ A;  1HQB A;  1VQN P;  1VQO P;  2JAZ A;  2JO0 A;  2N5I A;  2KOS A;  1JJ2 O;  2GYK A;  2N5H A;  2LOL A;  2M5R A;  1M6E X;  5DCK A;  2OAR A;  3CC2 P;  2FVE A;  2FQ0 A;  3EJD A;  3I56 P;  3GJN A;  4WYM A;  3CCU P;  2EFJ A;  3LRY A;  2PEO A;  1K8A Q;  2PNG A;  3GZL A;  3CC4 P;  3DS1 A;  3CCM P;  1E6J P;  1YJN P;  2KWL A;  2KGE A;  1YJ9 P;  2N98 A;  2JBG A;  1N8R Q;  4PH1 A;  2MY5 A;  2KOQ A;  2K92 A;  2XXM A;  2PEN A;  1L0H A;  3NY7 B;  2XV6 A;  2K94 A;  1ZNV A;  1L0I A;  2GZF A;  2FQ2 A;  2KGD A;  1DNY A;  1UJZ A;  2K93 A;  1EIA A;  2KG8 A;  2FAC A;  2QA4 P;  1RO2 A;  2LPK A;  3CPW O;  5HVC A;  3DPH A;  3G28 A;  3MGE A;  2LIU A;  4CA3 A;  4R0M A;  1T8K A;  2EHT A;  1E0H A;  5HGO A;  1IUQ A;  5CZD B;  2ONT A;  2GDY A;  1QVG O;  1KD1 Q;  3H0D A;  3CCJ P;  3B5I A;  2KR5 A;  4QNB A;  2L4B A;  2X2B A;  4XFZ A;  2PEJ A;  1ACP A;  2M8L A;  2PEM A;  3B4Q A;  2EHS A;  2N50 A;  1K9M Q;  1K30 A;  4XRO A;  1YI2 P;  1VQ4 P;  2FHS C;  2VLN A;  1OR5 A;  2VLQ A;  2JU1 A;  2OTL P;  1RNI A;  3G21 A;  2KGC A;  3I55 P;  4H2Y C;  2GZJ A;  4F37 A;  5BS2 A;  3CXC O;  2AFD A;  3DS0 A;  3EJE A;  3CC7 P;  2EIA A;  2VLO A;  2PEQ A;  2DGY A;  4BPG A;  1YIT P;  1S72 P;  2QEX P;  1KC8 Q;  2AVA A;  1Q86 Q;  2M8P A;  4IZ6 A;  2MR7 A;  1M1K Q;  4GR6 A;  2GZI A;  3G6E P;  1RO0 A;  3CCL P;  5HGM A;  1EMV A;  2LL8 A;  4M0I A;  3RG2 A;  2MD9 A;  4PH0 A;  2KOR A;  4U0F A;  3G71 P;  5KP7 B;  1CEI A;  3DS2 A;  3CCV P;  2CG5 B;  1VQ9 P;  1Z6M A;  5HV8 A;  5HGL A;  2MVU A;  5F2O A;  2L9F A;  2BHV A;  1EOQ A;  2Z46 A;  3GZM A;  2FVF A;  1GXG A;  2ERH A;  2BUO A;  3GKL C;  2OTJ P;  1VKU A;  2CNR A;  4NEO A;  2MR8 A;  4U0B A;  2KW2 A;  2JYL A;  2LML A;  2Z44 A;  3DS5 A;  4U0D A;  2M8N A;  2JGP A;  2XZ0 D;  1VQ5 P;  2JU2 A;  4MRT C;  1D1D A;  2GDX A;  1KLP A;  3CD6 P;  1VQL P;  3HYB A;  1Q82 Q;  3CMA P;  2E1M A;  2K0X A;  2L6E A;  2XT1 A;  1AYI A;  2N6Y A;  3H47 A;  2KOD A;  1VHN A;  3DS4 A;  2FVA A;  1QVF O;  2KOO A;  4BPF A;  3LMO A;  3Q20 A;  1M6N A;  4QKO A;  1DV5 A;  3M1M A;  1M74 A;  4HKG A;  3U43 A;  5HGN A;  5BS1 A;  3CCE P;  1VQK P;  5I4T G;  4H2X C;  2L22 A;  1ZMB A;  4COC A;  3G26 A;  2WPT A;  4U0E A;  3OW2 O;  3CCQ P;  4XRQ A;  1F80 D;  2Z45 A;  2PY8 A;  5EW5 E;  4IPY A;  2ROQ A;  1VQM P;  2GZG A;  2KG9 A;  3CCR P;  2KOP A;  1FR2 A;  2PEI A;  3CCS P;  2JQ4 A;  4DG9 A;  3E2D A;  2JYG A;  1GXH A;  3WBH A;  2CQ8 A;  3G1I A;  2LTE A;  1YIJ P;  3CE7 A;  2L0Q A;  4U0A A;  2QNW A;  4PXH B;  1VQ8 P;  2K2Q A;  2K0D X;  4XFY A;  1VQ6 P;  4COP A;  2EG5 A;  1BAJ A;  3P05 A;  1A8O A;  2VLP A;  1VQP P;  2N6Z A;  2AFE A;  1IMP A;  1QRJ A;  1UNK A;  3G1G A;  1MZ8 A;  2KGA A;  5KP8 B;  5KP6 B;  1NJI Q;  5F2K A;  2LKI A;  3DTJ A;  2XZ1 C;  1YJW P;  3DS3 A;  3NTE A;  4H2W C;  2MF4 A;  2CWO A;  1A43 A;  2FAE A;  3H4E A;  2LF4 A;  5F2N A;  2AF8 A;  5JPA A;  4PWV B;  3G29 A;  2GZE A;  3VRL C;  4BPH A;  1KQS O;  4UHP B;  1NQ4 A;  3CME P;  1W2B O;  2JB0 A;  2VSQ A;  1K73 Q;  2GDW A;  4GR2 A;  2P9X A;  3RG6 C;  2K0Y A;  2LIW A;  3G4S P;  1YHQ P;  5EJD A;  1HY8 A;  1AUM A;  7CEI A;  1BXI A;  2K5X A;  1X3O A;  2MVV A;  2PEK A;  4XFX A;  3EJB A;  3G0V A;  2FAD A;  1VQ7 P;  2KG6 A;  1Q7Y Q;  1AF8 A;  1IMQ A;  2FQ1 A;  1GPJ A;  2NO8 A;  2CGQ A;  1M90 Q;  1Q81 Q;  2DNW A;  4U0C A; 
#chains in the Genus database with same CATH homology
 2ERH A;  4QKO A;  2JBG A;  2VLP A;  3GJN A;  2WPT A;  3GKL C;  7CEI A;  1BXI A;  2K5X A;  1IMP A;  2GZE A;  2JAZ A;  3U43 A;  1UJZ A;  1GXH A;  1UNK A;  1CEI A;  2VLN A;  4UHP B;  5EW5 E;  2VLQ A;  1MZ8 A;  2JB0 A;  1AYI A;  2GZI A;  2GYK A;  1IMQ A;  2GZG A;  1ZNV A;  2NO8 A;  2GZJ A;  1EMV A;  4F37 A;  2K0D X;  1FR2 A;  1E0H A;  1GXG A;  2VLO A;  2GZF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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