3GJNA

Following evolutionary paths to high affinity and selectivity protein-protein interactions using colicin7 and immunity proteins
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
82
structure length
82
Chain Sequence
KHSISDYTEAEFLQLVTTICDAEATSEEELDKLITHFEEMTEHPSGSDLIYWPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Colicin-E9 immunity protein
publication title Following evolutionary paths to protein-protein interactions with high affinity and selectivity
pubmed doi rcsb
source organism Escherichia coli
molecule tags Hydrolase
total genus 27
structure length 82
sequence length 82
chains with identical sequence D
ec nomenclature
pdb deposition date 2009-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 3gjnA00
2GZJA 1BXIA 4F37A 3GKLC 1UJZA 7CEIA 2GZGA 2GYKA 3U43A 5EW5E 1IMQA 2JAZA 1EMVA 1GXGA 4UHPB 3GJNA 4QKOA 2K5XA 1AYIA 2VLQA 2VLNA 1FR2A 1E0HA 2JBGA 2K0DX 1CEIA 1MZ8A 1UNKA 1ZNVA 2JB0A 2GZEA 1IMPA 2GZFA 2WPTA 2VLPA 2ERHA 2GZIA 2NO8A 2VLOA 1GXHA
chains in the Genus database with same CATH superfamily
2JU2A 2FVAA 4GR6A 4F37A 1KD1Q 4PWVB 2L9FA 3CCLP 1YJWP 1KC8Q 1IMQA 2EG5A 4QKOA 4XRQA 2QA4P 2KW2A 2L0QA 2FADA 2VLPA 4PH0A 2XZ1C 1L0IA 1BAJA 3DS2A 3CPWO 2MR8A 2VLNA 2P9XA 4XFYA 1IMPA 2PEKA 2EFJA 4H2WC 1VQ4P 2GDWA 4XFZA 1GXHA 3EJBA 3CMEP 2XXMA 4U0DA 1NJIQ 2GZGA 3H0DA 5F2KA 2JAZA 2X2BA 2N5IA 4BPGA 3I55P 3RG6C 4U0EA 4H2XC 3CC2P 4XROA 2KG6A 2M8PA 3CD6P 1BXIA 3CXCO 3OW2O 4QNBA 2MR7A 3U43A 2FVEA 1ACPA 1Q82Q 2LL8A 4U0BA 1YJNP 4U0AA 2FQ1A 2JU1A 1K30A 2JYLA 3CMAP 3CCJP 5HGLA 3Q20A 3LMOA 1M6EX 2MF4A 2FQ0A 2Z46A 1UJZA 2N98A 7CEIA 1EMVA 3G29A 1VQ7P 4MRTC 5F2NA 2LPKA 1W2BO 1UNKA 5DCKA 2GZEA 2KOQA 2FAEA 3DS0A 2VLOA 1YHQP 2KGEA 2CQ8A 2K92A 3H47A 2LKIA 4IPYA 2ONTA 2E1MA 2PNGA 3EJEA 2QEXP 2VLQA 1VQ9P 2CNRA 1OR5A 1EOQA 1DNYA 2L22A 1AUMA 3CCMP 3MGEA 2VSQA 2L6EA 5EJDA 2PENA 2MD9A 3DS4A 2EHSA 2LF4A 3DPHA 3E2DA 2CGQA 1D1DA 3RG2A 2N6YA 2L4BA 5I4TG 2KWLA 2LIUA 2K0DX 2KG9A 1VQ5P 3CCRP 2AFEA 2K94A 2NO8A 2MVVA 1M74A 3HZQA 3DS3A 2XV6A 2QNWA 3CCEP 1NQ4A 2AFDA 3EJDA 1VQMP 3DS5A 1GXGA 4UHPB 2KOOA 1AYIA 2KGAA 2PEIA 1S72P 3G21A 5BS1A 1YJ9P 2LIWA 4COCA 2LOLA 2LTEA 1YIJP 4BPHA 2KODA 2M5RA 1K8AQ 3GJNA 3G4SP 1A8OA 2JYGA 2K2QA 4PXHB 3DTJA 3M1MA 1AF8A 2N6ZA 4PH1A 2MVUA 2OARA 2JGPA 1EIAA 3GZLA 1Q81Q 4U0CA 4CA3A 3CCSP 3CC7P 2DGYA 3CE7A 1K9MQ 3GZMA 1RO2A 2KR5A 2XZ0D 2PEJA 3WBHA 1VQOP 1ZNVA 4BPFA 3G6EP 1KQSO 1L0HA 2KOSA 1F80D 4DG9A 1DV5A 5EW5E 2FHSC 1QVGO 2K5XA 2N5HA 3CC4P 5HGOA 1FR2A 2KOPA 4R0MA 1VQ8P 1RNIA 3DS1A 2GZFA 3LRYA 2WPTA 1JJ2O 2CWOA 2GZIA 5HGNA 1A43A 2GZJA 1IUQA 4XFXA 2ROQA 4HKGA 2LMLA 1YI2P 2KGCA 2JBGA 1CEIA 1VQLP 4M0IA 5BS2A 1E6JP 2OTLP 1HQBA 3CCVP 1RO0A 1KLPA 1N8RQ 1K73Q 5HV8A 3I56P 2Z45A 3G26A 4NEOA 2JQ4A 2K0YA 4IZ6A 1VKUA 2BHVA 2N50A 3CCQP 1X3OA 2GDXA 5HVCA 2FACA 1ZMBA 2OTJP 2PEQA 1E0HA 1M1KQ 2PEMA 1M90Q 5JPAA 2JO0A 2JB0A 3NTEA 2FQ2A 2K0XA 3NY7B 1Z6MA 3B5IA 1Q86Q 5HGMA 5F2OA 2FVFA 3P05A 2KGDA 3G28A 3B4QA 3GKLC 1VHNA 2PEOA 4WYMA 3H4EA 2CG5B 2BUOA 3G0VA 1YITP 1GPJA 2Z44A 3HYBA 3G71P 2GDYA 1VQNP 1MZ8A 3G1IA 2EHTA 2ERHA 1QVFO 1VQKP 1VQPP 1HY8A 4H2YC 2AF8A 2KG8A 4U0FA 4GR2A 4COPA 3G1GA 2M8LA 2GYKA 3VRLC 2PY8A 5KP6B 1M6NA 2MY5A 1VQ6P 5KP7B 2XT1A 5KP8B 2KORA 1T8KA 2K93A 2EIAA 1Q7YQ 3CCUP 2DNWA 5CZDB 2AVAA 1QRJA 2M8NA
chains in the Genus database with same CATH topology
2GZJA 1BXIA 4F37A 3GKLC 1UJZA 7CEIA 2GZGA 2GYKA 3U43A 5EW5E 1IMQA 2JAZA 1EMVA 1GXGA 4UHPB 3GJNA 4QKOA 2K5XA 1AYIA 2VLQA 2VLNA 1FR2A 1E0HA 2JBGA 2K0DX 1CEIA 1MZ8A 1UNKA 1ZNVA 2JB0A 2GZEA 1IMPA 2GZFA 2WPTA 2VLPA 2ERHA 2GZIA 2NO8A 2VLOA 1GXHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GZJ A;  1BXI A;  4F37 A;  3GKL C;  1UJZ A;  7CEI A;  2GZG A;  2GYK A;  3U43 A;  5EW5 E;  1IMQ A;  2JAZ A;  1EMV A;  1GXG A;  4UHP B;  3GJN A;  4QKO A;  2K5X A;  1AYI A;  2VLQ A;  2VLN A;  1FR2 A;  1E0H A;  2JBG A;  2K0D X;  1CEI A;  1MZ8 A;  1UNK A;  1ZNV A;  2JB0 A;  2GZE A;  1IMP A;  2GZF A;  2WPT A;  2VLP A;  2ERH A;  2GZI A;  2NO8 A;  2VLO A;  1GXH A; 
#chains in the Genus database with same CATH topology
 2JU2 A;  2FVA A;  4GR6 A;  4F37 A;  1KD1 Q;  4PWV B;  2L9F A;  3CCL P;  1YJW P;  1KC8 Q;  1IMQ A;  2EG5 A;  4QKO A;  4XRQ A;  2QA4 P;  2KW2 A;  2L0Q A;  2FAD A;  2VLP A;  4PH0 A;  2XZ1 C;  1L0I A;  1BAJ A;  3DS2 A;  3CPW O;  2MR8 A;  2VLN A;  2P9X A;  4XFY A;  1IMP A;  2PEK A;  2EFJ A;  4H2W C;  1VQ4 P;  2GDW A;  4XFZ A;  1GXH A;  3EJB A;  3CME P;  2XXM A;  4U0D A;  1NJI Q;  2GZG A;  3H0D A;  5F2K A;  2JAZ A;  2X2B A;  2N5I A;  4BPG A;  3I55 P;  3RG6 C;  4U0E A;  4H2X C;  3CC2 P;  4XRO A;  2KG6 A;  2M8P A;  3CD6 P;  1BXI A;  3CXC O;  3OW2 O;  4QNB A;  2MR7 A;  3U43 A;  2FVE A;  1ACP A;  1Q82 Q;  2LL8 A;  4U0B A;  1YJN P;  4U0A A;  2FQ1 A;  2JU1 A;  1K30 A;  2JYL A;  3CMA P;  3CCJ P;  5HGL A;  3Q20 A;  3LMO A;  1M6E X;  2MF4 A;  2FQ0 A;  2Z46 A;  1UJZ A;  2N98 A;  7CEI A;  1EMV A;  3G29 A;  1VQ7 P;  4MRT C;  5F2N A;  2LPK A;  1W2B O;  1UNK A;  5DCK A;  2GZE A;  2KOQ A;  2FAE A;  3DS0 A;  2VLO A;  1YHQ P;  2KGE A;  2CQ8 A;  2K92 A;  3H47 A;  2LKI A;  4IPY A;  2ONT A;  2E1M A;  2PNG A;  3EJE A;  2QEX P;  2VLQ A;  1VQ9 P;  2CNR A;  1OR5 A;  1EOQ A;  1DNY A;  2L22 A;  1AUM A;  3CCM P;  3MGE A;  2VSQ A;  2L6E A;  5EJD A;  2PEN A;  2MD9 A;  3DS4 A;  2EHS A;  2LF4 A;  3DPH A;  3E2D A;  2CGQ A;  1D1D A;  3RG2 A;  2N6Y A;  2L4B A;  5I4T G;  2KWL A;  2LIU A;  2K0D X;  2KG9 A;  1VQ5 P;  3CCR P;  2AFE A;  2K94 A;  2NO8 A;  2MVV A;  1M74 A;  3HZQ A;  3DS3 A;  2XV6 A;  2QNW A;  3CCE P;  1NQ4 A;  2AFD A;  3EJD A;  1VQM P;  3DS5 A;  1GXG A;  4UHP B;  2KOO A;  1AYI A;  2KGA A;  2PEI A;  1S72 P;  3G21 A;  5BS1 A;  1YJ9 P;  2LIW A;  4COC A;  2LOL A;  2LTE A;  1YIJ P;  4BPH A;  2KOD A;  2M5R A;  1K8A Q;  3GJN A;  3G4S P;  1A8O A;  2JYG A;  2K2Q A;  4PXH B;  3DTJ A;  3M1M A;  1AF8 A;  2N6Z A;  4PH1 A;  2MVU A;  2OAR A;  2JGP A;  1EIA A;  3GZL A;  1Q81 Q;  4U0C A;  4CA3 A;  3CCS P;  3CC7 P;  2DGY A;  3CE7 A;  1K9M Q;  3GZM A;  1RO2 A;  2KR5 A;  2XZ0 D;  2PEJ A;  3WBH A;  1VQO P;  1ZNV A;  4BPF A;  3G6E P;  1KQS O;  1L0H A;  2KOS A;  1F80 D;  4DG9 A;  1DV5 A;  5EW5 E;  2FHS C;  1QVG O;  2K5X A;  2N5H A;  3CC4 P;  5HGO A;  1FR2 A;  2KOP A;  4R0M A;  1VQ8 P;  1RNI A;  3DS1 A;  2GZF A;  3LRY A;  2WPT A;  1JJ2 O;  2CWO A;  2GZI A;  5HGN A;  1A43 A;  2GZJ A;  1IUQ A;  4XFX A;  2ROQ A;  4HKG A;  2LML A;  1YI2 P;  2KGC A;  2JBG A;  1CEI A;  1VQL P;  4M0I A;  5BS2 A;  1E6J P;  2OTL P;  1HQB A;  3CCV P;  1RO0 A;  1KLP A;  1N8R Q;  1K73 Q;  5HV8 A;  3I56 P;  2Z45 A;  3G26 A;  4NEO A;  2JQ4 A;  2K0Y A;  4IZ6 A;  1VKU A;  2BHV A;  2N50 A;  3CCQ P;  1X3O A;  2GDX A;  5HVC A;  2FAC A;  1ZMB A;  2OTJ P;  2PEQ A;  1E0H A;  1M1K Q;  2PEM A;  1M90 Q;  5JPA A;  2JO0 A;  2JB0 A;  3NTE A;  2FQ2 A;  2K0X A;  3NY7 B;  1Z6M A;  3B5I A;  1Q86 Q;  5HGM A;  5F2O A;  2FVF A;  3P05 A;  2KGD A;  3G28 A;  3B4Q A;  3GKL C;  1VHN A;  2PEO A;  4WYM A;  3H4E A;  2CG5 B;  2BUO A;  3G0V A;  1YIT P;  1GPJ A;  2Z44 A;  3HYB A;  3G71 P;  2GDY A;  1VQN P;  1MZ8 A;  3G1I A;  2EHT A;  2ERH A;  1QVF O;  1VQK P;  1VQP P;  1HY8 A;  4H2Y C;  2AF8 A;  2KG8 A;  4U0F A;  4GR2 A;  4COP A;  3G1G A;  2M8L A;  2GYK A;  3VRL C;  2PY8 A;  5KP6 B;  1M6N A;  2MY5 A;  1VQ6 P;  5KP7 B;  2XT1 A;  5KP8 B;  2KOR A;  1T8K A;  2K93 A;  2EIA A;  1Q7Y Q;  3CCU P;  2DNW A;  5CZD B;  2AVA A;  1QRJ A;  2M8N A; 
#chains in the Genus database with same CATH homology
 2GZJ A;  1BXI A;  4F37 A;  3GKL C;  1UJZ A;  7CEI A;  2GZG A;  2GYK A;  3U43 A;  5EW5 E;  1IMQ A;  2JAZ A;  1EMV A;  1GXG A;  4UHP B;  3GJN A;  4QKO A;  2K5X A;  1AYI A;  2VLQ A;  2VLN A;  1FR2 A;  1E0H A;  2JBG A;  2K0D X;  1CEI A;  1MZ8 A;  1UNK A;  1ZNV A;  2JB0 A;  2GZE A;  1IMP A;  2GZF A;  2WPT A;  2VLP A;  2ERH A;  2GZI A;  2NO8 A;  2VLO A;  1GXH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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