1EMVA

Crystal structure of colicin e9 dnase domain with its cognate immunity protein im9 (1.7 angstroms)
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
83
structure length
83
Chain Sequence
LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords IMMUNITY PROTEIN IM9
publication title Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Immune system
total genus 28
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2000-03-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1emvA00
1ZNVA 2ERHA 1GXHA 2VLNA 1IMPA 2VLPA 7CEIA 4QKOA 1UJZA 1UNKA 2VLQA 1EMVA 2NO8A 2GZJA 4F37A 2VLOA 1IMQA 1E0HA 1AYIA 2GYKA 1GXGA 2K0DX 2K5XA 1MZ8A 3GJNA 2GZIA 5EW5E 2GZFA 2GZEA 4UHPB 1CEIA 2GZGA 1BXIA 2WPTA 3GKLC 1FR2A 2JBGA 3U43A 2JAZA 2JB0A
chains in the Genus database with same CATH superfamily
2VLNA 2MVUA 5HV8A 5HGLA 2P9XA 2GZJA 3CCQP 1RO0A 1M90Q 4COCA 5HVCA 2Z45A 2GZEA 2FVEA 3I55P 2WPTA 1K73Q 4HKGA 2FAEA 1GPJA 5HGMA 1HQBA 2DGYA 2JU1A 2XT1A 3H47A 3CCMP 4DG9A 1Q86Q 1M6EX 2KWLA 3CCUP 1FR2A 5HGOA 3EJEA 3CC7P 1UJZA 2VLQA 2KODA 3CCSP 3CCRP 1ACPA 1A43A 4XROA 3CXCO 2GZFA 5F2KA 2LF4A 2OTJP 2KW2A 2K2QA 4IZ6A 3G0VA 3DTJA 1GXHA 2EG5A 1RO2A 1DV5A 3CD6P 4PXHB 4F37A 2LTEA 3RG2A 2FQ1A 4BPHA 2K0DX 1ZMBA 1K9MQ 3GZLA 1AUMA 1YIJP 2M8PA 2ROQA 3CMEP 2JGPA 3DS2A 2PEJA 2LIWA 3HYBA 2GDWA 2KR5A 2VLPA 1YITP 3CCJP 1NJIQ 3CC2P 3CCVP 4U0FA 2K5XA 1X3OA 2KGAA 1BXIA 1VQ4P 1KD1Q 3LMOA 2K92A 3B5IA 2ERHA 2XZ0D 5KP8B 2XZ1C 3CCEP 4U0AA 1JJ2O 2X2BA 1L0IA 1QVFO 1K30A 2Z44A 2CG5B 1MZ8A 2ONTA 1F80D 2L0QA 2GDYA 3CE7A 2QEXP 2K0YA 2PEQA 1QVGO 1DNYA 3NY7B 2KG8A 3DS0A 1YJ9P 3G29A 2VLOA 2LL8A 1GXGA 2N98A 1KQSO 1VHNA 4CA3A 3G28A 2JYGA 2E1MA 2L6EA 1Q81Q 1VKUA 4PH1A 2PEIA 1IMPA 2KOOA 2LKIA 2L9FA 4BPFA 5BS1A 7CEIA 4MRTC 1UNKA 5F2OA 2N6ZA 3WBHA 3MGEA 1E0HA 5DCKA 1HY8A 2LIUA 3G21A 2N50A 2GZGA 3VRLC 3GKLC 2FQ0A 2JAZA 5JPAA 2JB0A 1YJNP 1NQ4A 3G71P 1YJWP 2JU2A 3DS1A 2JQ4A 3CCLP 2AFEA 3DPHA 2KGCA 3G1GA 3G6EP 2PY8A 2Z46A 1VQKP 2CGQA 2MY5A 1IUQA 4U0EA 1N8RQ 2FACA 1S72P 2JYLA 2PENA 2M8NA 5EJDA 4U0DA 4BPGA 2K94A 3EJDA 1A8OA 4WYMA 1K8AQ 2FVAA 1EMVA 2NO8A 1VQ9P 3H4EA 2KOPA 2FADA 4H2XC 2QNWA 2L4BA 2LPKA 2M5RA 2FHSC 2OARA 4M0IA 1VQLP 1T8KA 4GR6A 2MR7A 1ZNVA 3B4QA 2CNRA 2VSQA 5I4TG 4NEOA 1AYIA 2GYKA 2PEKA 4XFYA 2AF8A 1D1DA 2KORA 2AVAA 1M6NA 2JBGA 3U43A 2BHVA 4COPA 1QRJA 1VQ6P 2KG9A 1AF8A 1RNIA 5KP6B 3CMAP 2MR8A 3GZMA 2XXMA 1VQOP 4H2YC 4PH0A 2GZIA 2FVFA 2EFJA 2MD9A 1EIAA 3H0DA 1EOQA 2M8LA 1YI2P 1YHQP 1E6JP 2XV6A 2FQ2A 3DS5A 2PNGA 2EHSA 3DS3A 4QKOA 4H2WC 1W2BO 2BUOA 1Q82Q 2PEMA 4R0MA 1Z6MA 2LMLA 3OW2O 2JO0A 3GJNA 1VQ7P 2PEOA 2N6YA 1L0HA 3NTEA 4GR2A 3HZQA 1OR5A 2DNWA 3EJBA 3I56P 5KP7B 1VQPP 1KLPA 4XFXA 2CQ8A 3Q20A 1VQ5P 4PWVB 5CZDB 3G4SP 1IMQA 2KG6A 5BS2A 2EHTA 2CWOA 4U0BA 3G1IA 3P05A 2K93A 2N5HA 4U0CA 2KOQA 1VQNP 2EIAA 4QNBA 2KGEA 3LRYA 3CC4P 3RG6C 2N5IA 1Q7YQ 2GDXA 5F2NA 2KOSA 5HGNA 1M1KQ 2L22A 3M1MA 3CPWO 1KC8Q 2AFDA 1VQMP 4XFZA 1VQ8P 3G26A 2OTLP 2MVVA 1M74A 2K0XA 3DS4A 2QA4P 3E2DA 2MF4A 2LOLA 2KGDA 5EW5E 4UHPB 1CEIA 4IPYA 1BAJA 4XRQA
chains in the Genus database with same CATH topology
1ZNVA 2ERHA 1GXHA 2VLNA 1IMPA 2VLPA 7CEIA 4QKOA 1UJZA 1UNKA 2VLQA 1EMVA 2NO8A 2GZJA 4F37A 2VLOA 1IMQA 1E0HA 1AYIA 2GYKA 1GXGA 2K0DX 2K5XA 1MZ8A 3GJNA 2GZIA 5EW5E 2GZFA 2GZEA 4UHPB 1CEIA 2GZGA 1BXIA 2WPTA 3GKLC 1FR2A 2JBGA 3U43A 2JAZA 2JB0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZNV A;  2ERH A;  1GXH A;  2VLN A;  1IMP A;  2VLP A;  7CEI A;  4QKO A;  1UJZ A;  1UNK A;  2VLQ A;  1EMV A;  2NO8 A;  2GZJ A;  4F37 A;  2VLO A;  1IMQ A;  1E0H A;  1AYI A;  2GYK A;  1GXG A;  2K0D X;  2K5X A;  1MZ8 A;  3GJN A;  2GZI A;  5EW5 E;  2GZF A;  2GZE A;  4UHP B;  1CEI A;  2GZG A;  1BXI A;  2WPT A;  3GKL C;  1FR2 A;  2JBG A;  3U43 A;  2JAZ A;  2JB0 A; 
#chains in the Genus database with same CATH topology
 2VLN A;  2MVU A;  5HV8 A;  5HGL A;  2P9X A;  2GZJ A;  3CCQ P;  1RO0 A;  1M90 Q;  4COC A;  5HVC A;  2Z45 A;  2GZE A;  2FVE A;  3I55 P;  2WPT A;  1K73 Q;  4HKG A;  2FAE A;  1GPJ A;  5HGM A;  1HQB A;  2DGY A;  2JU1 A;  2XT1 A;  3H47 A;  3CCM P;  4DG9 A;  1Q86 Q;  1M6E X;  2KWL A;  3CCU P;  1FR2 A;  5HGO A;  3EJE A;  3CC7 P;  1UJZ A;  2VLQ A;  2KOD A;  3CCS P;  3CCR P;  1ACP A;  1A43 A;  4XRO A;  3CXC O;  2GZF A;  5F2K A;  2LF4 A;  2OTJ P;  2KW2 A;  2K2Q A;  4IZ6 A;  3G0V A;  3DTJ A;  1GXH A;  2EG5 A;  1RO2 A;  1DV5 A;  3CD6 P;  4PXH B;  4F37 A;  2LTE A;  3RG2 A;  2FQ1 A;  4BPH A;  2K0D X;  1ZMB A;  1K9M Q;  3GZL A;  1AUM A;  1YIJ P;  2M8P A;  2ROQ A;  3CME P;  2JGP A;  3DS2 A;  2PEJ A;  2LIW A;  3HYB A;  2GDW A;  2KR5 A;  2VLP A;  1YIT P;  3CCJ P;  1NJI Q;  3CC2 P;  3CCV P;  4U0F A;  2K5X A;  1X3O A;  2KGA A;  1BXI A;  1VQ4 P;  1KD1 Q;  3LMO A;  2K92 A;  3B5I A;  2ERH A;  2XZ0 D;  5KP8 B;  2XZ1 C;  3CCE P;  4U0A A;  1JJ2 O;  2X2B A;  1L0I A;  1QVF O;  1K30 A;  2Z44 A;  2CG5 B;  1MZ8 A;  2ONT A;  1F80 D;  2L0Q A;  2GDY A;  3CE7 A;  2QEX P;  2K0Y A;  2PEQ A;  1QVG O;  1DNY A;  3NY7 B;  2KG8 A;  3DS0 A;  1YJ9 P;  3G29 A;  2VLO A;  2LL8 A;  1GXG A;  2N98 A;  1KQS O;  1VHN A;  4CA3 A;  3G28 A;  2JYG A;  2E1M A;  2L6E A;  1Q81 Q;  1VKU A;  4PH1 A;  2PEI A;  1IMP A;  2KOO A;  2LKI A;  2L9F A;  4BPF A;  5BS1 A;  7CEI A;  4MRT C;  1UNK A;  5F2O A;  2N6Z A;  3WBH A;  3MGE A;  1E0H A;  5DCK A;  1HY8 A;  2LIU A;  3G21 A;  2N50 A;  2GZG A;  3VRL C;  3GKL C;  2FQ0 A;  2JAZ A;  5JPA A;  2JB0 A;  1YJN P;  1NQ4 A;  3G71 P;  1YJW P;  2JU2 A;  3DS1 A;  2JQ4 A;  3CCL P;  2AFE A;  3DPH A;  2KGC A;  3G1G A;  3G6E P;  2PY8 A;  2Z46 A;  1VQK P;  2CGQ A;  2MY5 A;  1IUQ A;  4U0E A;  1N8R Q;  2FAC A;  1S72 P;  2JYL A;  2PEN A;  2M8N A;  5EJD A;  4U0D A;  4BPG A;  2K94 A;  3EJD A;  1A8O A;  4WYM A;  1K8A Q;  2FVA A;  1EMV A;  2NO8 A;  1VQ9 P;  3H4E A;  2KOP A;  2FAD A;  4H2X C;  2QNW A;  2L4B A;  2LPK A;  2M5R A;  2FHS C;  2OAR A;  4M0I A;  1VQL P;  1T8K A;  4GR6 A;  2MR7 A;  1ZNV A;  3B4Q A;  2CNR A;  2VSQ A;  5I4T G;  4NEO A;  1AYI A;  2GYK A;  2PEK A;  4XFY A;  2AF8 A;  1D1D A;  2KOR A;  2AVA A;  1M6N A;  2JBG A;  3U43 A;  2BHV A;  4COP A;  1QRJ A;  1VQ6 P;  2KG9 A;  1AF8 A;  1RNI A;  5KP6 B;  3CMA P;  2MR8 A;  3GZM A;  2XXM A;  1VQO P;  4H2Y C;  4PH0 A;  2GZI A;  2FVF A;  2EFJ A;  2MD9 A;  1EIA A;  3H0D A;  1EOQ A;  2M8L A;  1YI2 P;  1YHQ P;  1E6J P;  2XV6 A;  2FQ2 A;  3DS5 A;  2PNG A;  2EHS A;  3DS3 A;  4QKO A;  4H2W C;  1W2B O;  2BUO A;  1Q82 Q;  2PEM A;  4R0M A;  1Z6M A;  2LML A;  3OW2 O;  2JO0 A;  3GJN A;  1VQ7 P;  2PEO A;  2N6Y A;  1L0H A;  3NTE A;  4GR2 A;  3HZQ A;  1OR5 A;  2DNW A;  3EJB A;  3I56 P;  5KP7 B;  1VQP P;  1KLP A;  4XFX A;  2CQ8 A;  3Q20 A;  1VQ5 P;  4PWV B;  5CZD B;  3G4S P;  1IMQ A;  2KG6 A;  5BS2 A;  2EHT A;  2CWO A;  4U0B A;  3G1I A;  3P05 A;  2K93 A;  2N5H A;  4U0C A;  2KOQ A;  1VQN P;  2EIA A;  4QNB A;  2KGE A;  3LRY A;  3CC4 P;  3RG6 C;  2N5I A;  1Q7Y Q;  2GDX A;  5F2N A;  2KOS A;  5HGN A;  1M1K Q;  2L22 A;  3M1M A;  3CPW O;  1KC8 Q;  2AFD A;  1VQM P;  4XFZ A;  1VQ8 P;  3G26 A;  2OTL P;  2MVV A;  1M74 A;  2K0X A;  3DS4 A;  2QA4 P;  3E2D A;  2MF4 A;  2LOL A;  2KGD A;  5EW5 E;  4UHP B;  1CEI A;  4IPY A;  1BAJ A;  4XRQ A; 
#chains in the Genus database with same CATH homology
 1ZNV A;  2ERH A;  1GXH A;  2VLN A;  1IMP A;  2VLP A;  7CEI A;  4QKO A;  1UJZ A;  1UNK A;  2VLQ A;  1EMV A;  2NO8 A;  2GZJ A;  4F37 A;  2VLO A;  1IMQ A;  1E0H A;  1AYI A;  2GYK A;  1GXG A;  2K0D X;  2K5X A;  1MZ8 A;  3GJN A;  2GZI A;  5EW5 E;  2GZF A;  2GZE A;  4UHP B;  1CEI A;  2GZG A;  1BXI A;  2WPT A;  3GKL C;  1FR2 A;  2JBG A;  3U43 A;  2JAZ A;  2JB0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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