1EMVA

Crystal structure of colicin e9 dnase domain with its cognate immunity protein im9 (1.7 angstroms)
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
83
structure length
83
Chain Sequence
LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
source organism Escherichia coli
publication title Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes.
pubmed doi rcsb
molecule keywords IMMUNITY PROTEIN IM9
total genus 28
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2000-03-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1emvA00
2VLPA 1BXIA 1FR2A 2JAZA 2GYKA 1UNKA 1GXGA 5EW5E 1MZ8A 2GZIA 3U43A 1UJZA 1CEIA 1GXHA 4F37A 4UHPB 2NO8A 1ZNVA 2K0DX 2GZEA 2VLNA 2K5XA 1E0HA 2ERHA 2JBGA 2GZFA 2GZGA 3GJNA 7CEIA 1EMVA 1IMPA 2VLQA 4QKOA 2VLOA 3GKLC 1AYIA 1IMQA 2JB0A 2WPTA 2GZJA
chains in the Genus database with same CATH superfamily
2L6EA 2LF4A 3U43A 2MY5A 4F37A 1VQ4P 2K92A 2CGQA 4MRTC 2FAEA 3GJNA 1OR5A 2QNWA 4PXHB 4GR2A 2N6ZA 3DTJA 4H2XC 1Z6MA 2FVFA 1VQPP 2KOQA 2AF8A 3B4QA 3RG2A 1QVFO 1VKUA 5KP8B 4IPYA 1E0HA 5KP6B 4M0IA 2KGEA 3EJBA 3DS5A 4GR6A 2LIWA 2JYLA 3G28A 4XFYA 3H47A 1BXIA 3LRYA 2JU1A 1UJZA 1GXHA 5DCKA 1QRJA 2K0DX 4U0AA 3GZMA 5HGNA 3DS2A 5HGOA 1AYIA 4BPGA 3MGEA 2JB0A 3DS4A 2CWOA 1YJWP 3E2DA 5F2NA 1NQ4A 2CG5B 4WYMA 1UNKA 2VSQA 1MZ8A 4U0EA 2JQ4A 2AVAA 4U0FA 4PH0A 2MD9A 1Q82Q 1RO0A 1IMPA 5JPAA 1AUMA 1GPJA 3EJDA 1HQBA 2EHSA 2GDYA 1RO2A 1YHQP 3RG6C 4HKGA 2GZEA 2KGAA 2BUOA 2KGCA 1D1DA 2EFJA 1YJNP 3CCMP 3G4SP 1VQ9P 3G1GA 5KP7B 4IZ6A 2XXMA 1VQ6P 3CPWO 3G26A 1AF8A 3G71P 1A43A 2PEKA 2PEMA 2GZFA 2L22A 4COCA 1VQOP 2JO0A 3B5IA 4R0MA 3VRLC 2VLOA 1L0IA 3I55P 1ZMBA 3Q20A 1VQNP 4BPFA 2PENA 1N8RQ 2N6YA 2CNRA 2N5HA 1ZNVA 5I4TG 2LPKA 2N98A 2M5RA 3G6EP 2Z46A 3DS1A 5BS2A 1L0HA 1YI2P 4U0DA 2PEIA 1VQLP 3CCSP 2EG5A 1VQ8P 2FQ0A 2LTEA 3CCQP 3G29A 2KOSA 2KWLA 1EMVA 1KQSO 2LIUA 1DV5A 3GZLA 2K0YA 1ACPA 2FACA 3HYBA 1Q7YQ 3CCEP 1M6EX 4BPHA 2PNGA 2GDWA 2PEOA 2FQ1A 3G0VA 1M74A 2M8LA 1KD1Q 4UHPB 2GZGA 4U0CA 3HZQA 3DPHA 3CC4P 2OARA 3CC2P 5F2KA 1IMQA 2N5IA 2L4BA 2XZ0D 1Q86Q 2DGYA 5HGLA 3G21A 2MF4A 1EIAA 1X3OA 3DS0A 2NO8A 2QA4P 2KOPA 4DG9A 2JBGA 4PH1A 1F80D 2OTLP 2KORA 3NY7B 2LMLA 2K2QA 2M8PA 1YITP 2LL8A 5HVCA 1NJIQ 2N50A 2GDXA 2KW2A 2P9XA 1FR2A 5EJDA 1VQ7P 3EJEA 3H4EA 2K94A 2KG9A 1YIJP 2EHTA 2KG8A 2XV6A 3G1IA 2PEJA 3LMOA 3H0DA 1EOQA 2AFEA 2LKIA 2Z45A 2OTJP 4XFZA 5HV8A 5CZDB 1E6JP 2FADA 2M8NA 2Z44A 1W2BO 2KGDA 3CCUP 1KC8Q 2GZIA 4H2WC 1CEIA 2FQ2A 4COPA 3CCRP 2KODA 2DNWA 1K30A 1QVGO 5BS1A 1RNIA 4QNBA 2ROQA 1T8KA 4U0BA 3NTEA 4XFXA 2JAZA 2L0QA 4NEOA 2FHSC 1KLPA 2K0XA 4XROA 4CA3A 2K5XA 1K73Q 2MVUA 1DNYA 2FVAA 2MVVA 3CC7P 3CE7A 2K93A 2VLQA 1IUQA 2EIAA 4QKOA 3I56P 3P05A 4XRQA 1Q81Q 2WPTA 2JGPA 1VHNA 2CQ8A 1M6NA 3OW2O 3DS3A 1VQMP 1K8AQ 1VQ5P 1BAJA 3GKLC 2L9FA 3CCJP 2XT1A 2KOOA 3CXCO 2VLPA 2ONTA 2GYKA 2JU2A 3CCLP 5EW5E 2JYGA 1JJ2O 2ERHA 7CEIA 1M1KQ 2PY8A 3M1MA 2KG6A 3CD6P 2X2BA 4PWVB 1K9MQ 2MR8A 2MR7A 5HGMA 2FVEA 2AFDA 1M90Q 2BHVA 4H2YC 1GXGA 1A8OA 2KR5A 1S72P 2VLNA 2PEQA 2XZ1C 1YJ9P 3WBHA 5F2OA 1VQKP 2LOLA 2E1MA 2QEXP 1HY8A 3CMEP 3CMAP 3CCVP 2GZJA
chains in the Genus database with same CATH topology
2VLPA 1BXIA 1FR2A 2JAZA 2GYKA 1UNKA 1GXGA 5EW5E 1MZ8A 2GZIA 3U43A 1UJZA 1CEIA 1GXHA 4F37A 4UHPB 2NO8A 1ZNVA 2K0DX 2GZEA 2VLNA 2K5XA 1E0HA 2ERHA 2JBGA 2GZFA 2GZGA 3GJNA 7CEIA 1EMVA 1IMPA 2VLQA 4QKOA 2VLOA 3GKLC 1AYIA 1IMQA 2JB0A 2WPTA 2GZJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VLP A;  1BXI A;  1FR2 A;  2JAZ A;  2GYK A;  1UNK A;  1GXG A;  5EW5 E;  1MZ8 A;  2GZI A;  3U43 A;  1UJZ A;  1CEI A;  1GXH A;  4F37 A;  4UHP B;  2NO8 A;  1ZNV A;  2K0D X;  2GZE A;  2VLN A;  2K5X A;  1E0H A;  2ERH A;  2JBG A;  2GZF A;  2GZG A;  3GJN A;  7CEI A;  1EMV A;  1IMP A;  2VLQ A;  4QKO A;  2VLO A;  3GKL C;  1AYI A;  1IMQ A;  2JB0 A;  2WPT A;  2GZJ A; 
#chains in the Genus database with same CATH topology
 2L6E A;  2LF4 A;  3U43 A;  2MY5 A;  4F37 A;  1VQ4 P;  2K92 A;  2CGQ A;  4MRT C;  2FAE A;  3GJN A;  1OR5 A;  2QNW A;  4PXH B;  4GR2 A;  2N6Z A;  3DTJ A;  4H2X C;  1Z6M A;  2FVF A;  1VQP P;  2KOQ A;  2AF8 A;  3B4Q A;  3RG2 A;  1QVF O;  1VKU A;  5KP8 B;  4IPY A;  1E0H A;  5KP6 B;  4M0I A;  2KGE A;  3EJB A;  3DS5 A;  4GR6 A;  2LIW A;  2JYL A;  3G28 A;  4XFY A;  3H47 A;  1BXI A;  3LRY A;  2JU1 A;  1UJZ A;  1GXH A;  5DCK A;  1QRJ A;  2K0D X;  4U0A A;  3GZM A;  5HGN A;  3DS2 A;  5HGO A;  1AYI A;  4BPG A;  3MGE A;  2JB0 A;  3DS4 A;  2CWO A;  1YJW P;  3E2D A;  5F2N A;  1NQ4 A;  2CG5 B;  4WYM A;  1UNK A;  2VSQ A;  1MZ8 A;  4U0E A;  2JQ4 A;  2AVA A;  4U0F A;  4PH0 A;  2MD9 A;  1Q82 Q;  1RO0 A;  1IMP A;  5JPA A;  1AUM A;  1GPJ A;  3EJD A;  1HQB A;  2EHS A;  2GDY A;  1RO2 A;  1YHQ P;  3RG6 C;  4HKG A;  2GZE A;  2KGA A;  2BUO A;  2KGC A;  1D1D A;  2EFJ A;  1YJN P;  3CCM P;  3G4S P;  1VQ9 P;  3G1G A;  5KP7 B;  4IZ6 A;  2XXM A;  1VQ6 P;  3CPW O;  3G26 A;  1AF8 A;  3G71 P;  1A43 A;  2PEK A;  2PEM A;  2GZF A;  2L22 A;  4COC A;  1VQO P;  2JO0 A;  3B5I A;  4R0M A;  3VRL C;  2VLO A;  1L0I A;  3I55 P;  1ZMB A;  3Q20 A;  1VQN P;  4BPF A;  2PEN A;  1N8R Q;  2N6Y A;  2CNR A;  2N5H A;  1ZNV A;  5I4T G;  2LPK A;  2N98 A;  2M5R A;  3G6E P;  2Z46 A;  3DS1 A;  5BS2 A;  1L0H A;  1YI2 P;  4U0D A;  2PEI A;  1VQL P;  3CCS P;  2EG5 A;  1VQ8 P;  2FQ0 A;  2LTE A;  3CCQ P;  3G29 A;  2KOS A;  2KWL A;  1EMV A;  1KQS O;  2LIU A;  1DV5 A;  3GZL A;  2K0Y A;  1ACP A;  2FAC A;  3HYB A;  1Q7Y Q;  3CCE P;  1M6E X;  4BPH A;  2PNG A;  2GDW A;  2PEO A;  2FQ1 A;  3G0V A;  1M74 A;  2M8L A;  1KD1 Q;  4UHP B;  2GZG A;  4U0C A;  3HZQ A;  3DPH A;  3CC4 P;  2OAR A;  3CC2 P;  5F2K A;  1IMQ A;  2N5I A;  2L4B A;  2XZ0 D;  1Q86 Q;  2DGY A;  5HGL A;  3G21 A;  2MF4 A;  1EIA A;  1X3O A;  3DS0 A;  2NO8 A;  2QA4 P;  2KOP A;  4DG9 A;  2JBG A;  4PH1 A;  1F80 D;  2OTL P;  2KOR A;  3NY7 B;  2LML A;  2K2Q A;  2M8P A;  1YIT P;  2LL8 A;  5HVC A;  1NJI Q;  2N50 A;  2GDX A;  2KW2 A;  2P9X A;  1FR2 A;  5EJD A;  1VQ7 P;  3EJE A;  3H4E A;  2K94 A;  2KG9 A;  1YIJ P;  2EHT A;  2KG8 A;  2XV6 A;  3G1I A;  2PEJ A;  3LMO A;  3H0D A;  1EOQ A;  2AFE A;  2LKI A;  2Z45 A;  2OTJ P;  4XFZ A;  5HV8 A;  5CZD B;  1E6J P;  2FAD A;  2M8N A;  2Z44 A;  1W2B O;  2KGD A;  3CCU P;  1KC8 Q;  2GZI A;  4H2W C;  1CEI A;  2FQ2 A;  4COP A;  3CCR P;  2KOD A;  2DNW A;  1K30 A;  1QVG O;  5BS1 A;  1RNI A;  4QNB A;  2ROQ A;  1T8K A;  4U0B A;  3NTE A;  4XFX A;  2JAZ A;  2L0Q A;  4NEO A;  2FHS C;  1KLP A;  2K0X A;  4XRO A;  4CA3 A;  2K5X A;  1K73 Q;  2MVU A;  1DNY A;  2FVA A;  2MVV A;  3CC7 P;  3CE7 A;  2K93 A;  2VLQ A;  1IUQ A;  2EIA A;  4QKO A;  3I56 P;  3P05 A;  4XRQ A;  1Q81 Q;  2WPT A;  2JGP A;  1VHN A;  2CQ8 A;  1M6N A;  3OW2 O;  3DS3 A;  1VQM P;  1K8A Q;  1VQ5 P;  1BAJ A;  3GKL C;  2L9F A;  3CCJ P;  2XT1 A;  2KOO A;  3CXC O;  2VLP A;  2ONT A;  2GYK A;  2JU2 A;  3CCL P;  5EW5 E;  2JYG A;  1JJ2 O;  2ERH A;  7CEI A;  1M1K Q;  2PY8 A;  3M1M A;  2KG6 A;  3CD6 P;  2X2B A;  4PWV B;  1K9M Q;  2MR8 A;  2MR7 A;  5HGM A;  2FVE A;  2AFD A;  1M90 Q;  2BHV A;  4H2Y C;  1GXG A;  1A8O A;  2KR5 A;  1S72 P;  2VLN A;  2PEQ A;  2XZ1 C;  1YJ9 P;  3WBH A;  5F2O A;  1VQK P;  2LOL A;  2E1M A;  2QEX P;  1HY8 A;  3CME P;  3CMA P;  3CCV P;  2GZJ A; 
#chains in the Genus database with same CATH homology
 2VLP A;  1BXI A;  1FR2 A;  2JAZ A;  2GYK A;  1UNK A;  1GXG A;  5EW5 E;  1MZ8 A;  2GZI A;  3U43 A;  1UJZ A;  1CEI A;  1GXH A;  4F37 A;  4UHP B;  2NO8 A;  1ZNV A;  2K0D X;  2GZE A;  2VLN A;  2K5X A;  1E0H A;  2ERH A;  2JBG A;  2GZF A;  2GZG A;  3GJN A;  7CEI A;  1EMV A;  1IMP A;  2VLQ A;  4QKO A;  2VLO A;  3GKL C;  1AYI A;  1IMQ A;  2JB0 A;  2WPT A;  2GZJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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