1EMVA

Crystal structure of colicin e9 dnase domain with its cognate immunity protein im9 (1.7 angstroms)
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
83
structure length
83
Chain Sequence
LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords IMMUNITY PROTEIN IM9
publication title Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes.
pubmed doi rcsb
source organism Escherichia coli
total genus 28
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2000-03-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1emvA00
4UHPB 5EW5E 2VLQA 3U43A 2NO8A 1GXHA 2JBGA 2GZGA 2K5XA 2GZJA 7CEIA 4F37A 4QKOA 2GYKA 1GXGA 1UNKA 1BXIA 2GZFA 2ERHA 2VLPA 1AYIA 2K0DX 1CEIA 1MZ8A 1ZNVA 3GJNA 1FR2A 2WPTA 2JB0A 1IMQA 1E0HA 2VLNA 2GZIA 2JAZA 1UJZA 1EMVA 3GKLC 2VLOA 2GZEA 1IMPA
chains in the Genus database with same CATH superfamily
2BHVA 2CGQA 2GDWA 2ROQA 5BS2A 3CCEP 2FVAA 2L4BA 2KGCA 2LF4A 3CCSP 2K0YA 1ACPA 3CCQP 2XXMA 3WBHA 1IMQA 1IMPA 2OTJP 2KW2A 1RO2A 2K2QA 2CNRA 3DS1A 1A43A 3DS4A 5KP6B 4U0BA 1N8RQ 5HGOA 4QNBA 3GJNA 3I56P 1Q81Q 4NEOA 3EJBA 2XT1A 2FACA 2KG6A 2L9FA 2JU2A 2Z46A 2FQ2A 2GDYA 1OR5A 1QRJA 1A8OA 2EIAA 2JYLA 2AFDA 1GPJA 2N98A 1YIJP 3G0VA 2FHSC 1CEIA 2KOOA 1VQMP 3B4QA 1ZMBA 2PEIA 2LOLA 2JGPA 1X3OA 1M6NA 3CCLP 2VLQA 3CCUP 2K5XA 4XFZA 2L22A 3NTEA 1K8AQ 1KC8Q 2LTEA 2P9XA 5HVCA 2K0DX 2PEKA 2XZ1C 2KR5A 2JB0A 4XRQA 2K0XA 2Z44A 2LKIA 2CQ8A 2FADA 1T8KA 2KG8A 2KOSA 2OARA 3NY7B 4PWVB 2MVVA 3RG6C 7CEIA 3H0DA 1L0IA 2KOQA 1D1DA 3CMEP 2QA4P 1BXIA 1UNKA 2VLPA 2ERHA 1Q82Q 1AUMA 1L0HA 1E6JP 2KG9A 2VLOA 2PEOA 4COCA 5F2OA 2GZEA 1YITP 2KOPA 2EHTA 1Z6MA 2N6YA 3LMOA 3G1GA 5HGMA 2GZGA 2LIWA 3MGEA 2JQ4A 2AFEA 3LRYA 5KP8B 1YJWP 2K92A 2LPKA 4U0AA 1E0HA 4U0CA 4PH1A 2X2BA 3G21A 5BS1A 2QEXP 3DS3A 3CCJP 2M5RA 3CPWO 2FVEA 2OTLP 2BUOA 3G6EP 2WPTA 1VQOP 3E2DA 2ONTA 2VLNA 2AF8A 1QVGO 3CC4P 2JO0A 4H2WC 2N50A 3VRLC 2KGEA 4CA3A 2FQ0A 4WYMA 2DGYA 5HGNA 2MVUA 3G1IA 3DS0A 2KORA 3H4EA 2KGDA 5JPAA 3EJEA 4PH0A 1YJ9P 3CXCO 2MD9A 1VQPP 4U0DA 1S72P 1YJNP 4MRTC 2MR7A 4IZ6A 4IPYA 1VQKP 2JU1A 3DTJA 2JBGA 4DG9A 1K73Q 2FQ1A 2EFJA 1DNYA 2PEMA 3B5IA 1VQ7P 3M1MA 2L6EA 3P05A 4H2YC 4GR6A 3CE7A 1KQSO 2FAEA 1YI2P 1VKUA 1VQ5P 3EJDA 2FVFA 2JYGA 4GR2A 2M8LA 5CZDB 2N5IA 1W2BO 2CWOA 3OW2O 2MY5A 3CMAP 2MR8A 2LIUA 1VQ9P 2VSQA 1F80D 2JAZA 3CCMP 5HV8A 2PY8A 3DS5A 1RO0A 4BPGA 1BAJA 4UHPB 2L0QA 4H2XC 1NJIQ 2QNWA 3GZLA 4XFYA 4PXHB 3G26A 3G28A 1HQBA 1GXGA 2GYKA 1VQ8P 3HZQA 3H47A 1VHNA 5EJDA 4BPHA 2KODA 1KD1Q 3GKLC 3G29A 2PEJA 4M0IA 5I4TG 3HYBA 3CCVP 1GXHA 2AVAA 1K30A 2GZJA 2KGAA 4F37A 1VQ6P 1HY8A 2MF4A 3DPHA 4QKOA 2EHSA 1FR2A 4U0FA 2N5HA 2M8PA 3G4SP 5F2NA 1M1KQ 5KP7B 3DS2A 1NQ4A 3U43A 2NO8A 1RNIA 1M90Q 1VQNP 3CC2P 1M6EX 1AYIA 1Q7YQ 5F2KA 4U0EA 1EMVA 2EG5A 3G71P 1AF8A 3GZMA 3Q20A 1EOQA 1IUQA 2K93A 1VQ4P 2GZFA 4XROA 5DCKA 3I55P 3RG2A 1VQLP 4R0MA 2M8NA 2KWLA 2PEQA 4COPA 1UJZA 1QVFO 3CD6P 1K9MQ 1DV5A 2XV6A 3CC7P 2N6ZA 1EIAA 4BPFA 1YHQP 2GDXA 1MZ8A 2Z45A 1Q86Q 2DNWA 2E1MA 2GZIA 2CG5B 5EW5E 4XFXA 2LMLA 1KLPA 3CCRP 2PENA 2XZ0D 2LL8A 1JJ2O 2PNGA 5HGLA 1ZNVA 2K94A 4HKGA 1M74A
chains in the Genus database with same CATH topology
4UHPB 5EW5E 2VLQA 3U43A 2NO8A 1GXHA 2JBGA 2GZGA 2K5XA 2GZJA 7CEIA 4F37A 4QKOA 2GYKA 1GXGA 1UNKA 1BXIA 2GZFA 2ERHA 2VLPA 1AYIA 2K0DX 1CEIA 1MZ8A 1ZNVA 3GJNA 1FR2A 2WPTA 2JB0A 1IMQA 1E0HA 2VLNA 2GZIA 2JAZA 1UJZA 1EMVA 3GKLC 2VLOA 2GZEA 1IMPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UHP B;  5EW5 E;  2VLQ A;  3U43 A;  2NO8 A;  1GXH A;  2JBG A;  2GZG A;  2K5X A;  2GZJ A;  7CEI A;  4F37 A;  4QKO A;  2GYK A;  1GXG A;  1UNK A;  1BXI A;  2GZF A;  2ERH A;  2VLP A;  1AYI A;  2K0D X;  1CEI A;  1MZ8 A;  1ZNV A;  3GJN A;  1FR2 A;  2WPT A;  2JB0 A;  1IMQ A;  1E0H A;  2VLN A;  2GZI A;  2JAZ A;  1UJZ A;  1EMV A;  3GKL C;  2VLO A;  2GZE A;  1IMP A; 
#chains in the Genus database with same CATH topology
 2BHV A;  2CGQ A;  2GDW A;  2ROQ A;  5BS2 A;  3CCE P;  2FVA A;  2L4B A;  2KGC A;  2LF4 A;  3CCS P;  2K0Y A;  1ACP A;  3CCQ P;  2XXM A;  3WBH A;  1IMQ A;  1IMP A;  2OTJ P;  2KW2 A;  1RO2 A;  2K2Q A;  2CNR A;  3DS1 A;  1A43 A;  3DS4 A;  5KP6 B;  4U0B A;  1N8R Q;  5HGO A;  4QNB A;  3GJN A;  3I56 P;  1Q81 Q;  4NEO A;  3EJB A;  2XT1 A;  2FAC A;  2KG6 A;  2L9F A;  2JU2 A;  2Z46 A;  2FQ2 A;  2GDY A;  1OR5 A;  1QRJ A;  1A8O A;  2EIA A;  2JYL A;  2AFD A;  1GPJ A;  2N98 A;  1YIJ P;  3G0V A;  2FHS C;  1CEI A;  2KOO A;  1VQM P;  3B4Q A;  1ZMB A;  2PEI A;  2LOL A;  2JGP A;  1X3O A;  1M6N A;  3CCL P;  2VLQ A;  3CCU P;  2K5X A;  4XFZ A;  2L22 A;  3NTE A;  1K8A Q;  1KC8 Q;  2LTE A;  2P9X A;  5HVC A;  2K0D X;  2PEK A;  2XZ1 C;  2KR5 A;  2JB0 A;  4XRQ A;  2K0X A;  2Z44 A;  2LKI A;  2CQ8 A;  2FAD A;  1T8K A;  2KG8 A;  2KOS A;  2OAR A;  3NY7 B;  4PWV B;  2MVV A;  3RG6 C;  7CEI A;  3H0D A;  1L0I A;  2KOQ A;  1D1D A;  3CME P;  2QA4 P;  1BXI A;  1UNK A;  2VLP A;  2ERH A;  1Q82 Q;  1AUM A;  1L0H A;  1E6J P;  2KG9 A;  2VLO A;  2PEO A;  4COC A;  5F2O A;  2GZE A;  1YIT P;  2KOP A;  2EHT A;  1Z6M A;  2N6Y A;  3LMO A;  3G1G A;  5HGM A;  2GZG A;  2LIW A;  3MGE A;  2JQ4 A;  2AFE A;  3LRY A;  5KP8 B;  1YJW P;  2K92 A;  2LPK A;  4U0A A;  1E0H A;  4U0C A;  4PH1 A;  2X2B A;  3G21 A;  5BS1 A;  2QEX P;  3DS3 A;  3CCJ P;  2M5R A;  3CPW O;  2FVE A;  2OTL P;  2BUO A;  3G6E P;  2WPT A;  1VQO P;  3E2D A;  2ONT A;  2VLN A;  2AF8 A;  1QVG O;  3CC4 P;  2JO0 A;  4H2W C;  2N50 A;  3VRL C;  2KGE A;  4CA3 A;  2FQ0 A;  4WYM A;  2DGY A;  5HGN A;  2MVU A;  3G1I A;  3DS0 A;  2KOR A;  3H4E A;  2KGD A;  5JPA A;  3EJE A;  4PH0 A;  1YJ9 P;  3CXC O;  2MD9 A;  1VQP P;  4U0D A;  1S72 P;  1YJN P;  4MRT C;  2MR7 A;  4IZ6 A;  4IPY A;  1VQK P;  2JU1 A;  3DTJ A;  2JBG A;  4DG9 A;  1K73 Q;  2FQ1 A;  2EFJ A;  1DNY A;  2PEM A;  3B5I A;  1VQ7 P;  3M1M A;  2L6E A;  3P05 A;  4H2Y C;  4GR6 A;  3CE7 A;  1KQS O;  2FAE A;  1YI2 P;  1VKU A;  1VQ5 P;  3EJD A;  2FVF A;  2JYG A;  4GR2 A;  2M8L A;  5CZD B;  2N5I A;  1W2B O;  2CWO A;  3OW2 O;  2MY5 A;  3CMA P;  2MR8 A;  2LIU A;  1VQ9 P;  2VSQ A;  1F80 D;  2JAZ A;  3CCM P;  5HV8 A;  2PY8 A;  3DS5 A;  1RO0 A;  4BPG A;  1BAJ A;  4UHP B;  2L0Q A;  4H2X C;  1NJI Q;  2QNW A;  3GZL A;  4XFY A;  4PXH B;  3G26 A;  3G28 A;  1HQB A;  1GXG A;  2GYK A;  1VQ8 P;  3HZQ A;  3H47 A;  1VHN A;  5EJD A;  4BPH A;  2KOD A;  1KD1 Q;  3GKL C;  3G29 A;  2PEJ A;  4M0I A;  5I4T G;  3HYB A;  3CCV P;  1GXH A;  2AVA A;  1K30 A;  2GZJ A;  2KGA A;  4F37 A;  1VQ6 P;  1HY8 A;  2MF4 A;  3DPH A;  4QKO A;  2EHS A;  1FR2 A;  4U0F A;  2N5H A;  2M8P A;  3G4S P;  5F2N A;  1M1K Q;  5KP7 B;  3DS2 A;  1NQ4 A;  3U43 A;  2NO8 A;  1RNI A;  1M90 Q;  1VQN P;  3CC2 P;  1M6E X;  1AYI A;  1Q7Y Q;  5F2K A;  4U0E A;  1EMV A;  2EG5 A;  3G71 P;  1AF8 A;  3GZM A;  3Q20 A;  1EOQ A;  1IUQ A;  2K93 A;  1VQ4 P;  2GZF A;  4XRO A;  5DCK A;  3I55 P;  3RG2 A;  1VQL P;  4R0M A;  2M8N A;  2KWL A;  2PEQ A;  4COP A;  1UJZ A;  1QVF O;  3CD6 P;  1K9M Q;  1DV5 A;  2XV6 A;  3CC7 P;  2N6Z A;  1EIA A;  4BPF A;  1YHQ P;  2GDX A;  1MZ8 A;  2Z45 A;  1Q86 Q;  2DNW A;  2E1M A;  2GZI A;  2CG5 B;  5EW5 E;  4XFX A;  2LML A;  1KLP A;  3CCR P;  2PEN A;  2XZ0 D;  2LL8 A;  1JJ2 O;  2PNG A;  5HGL A;  1ZNV A;  2K94 A;  4HKG A;  1M74 A; 
#chains in the Genus database with same CATH homology
 4UHP B;  5EW5 E;  2VLQ A;  3U43 A;  2NO8 A;  1GXH A;  2JBG A;  2GZG A;  2K5X A;  2GZJ A;  7CEI A;  4F37 A;  4QKO A;  2GYK A;  1GXG A;  1UNK A;  1BXI A;  2GZF A;  2ERH A;  2VLP A;  1AYI A;  2K0D X;  1CEI A;  1MZ8 A;  1ZNV A;  3GJN A;  1FR2 A;  2WPT A;  2JB0 A;  1IMQ A;  1E0H A;  2VLN A;  2GZI A;  2JAZ A;  1UJZ A;  1EMV A;  3GKL C;  2VLO A;  2GZE A;  1IMP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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