1EMVA

Crystal structure of colicin e9 dnase domain with its cognate immunity protein im9 (1.7 angstroms)
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
83
structure length
83
Chain Sequence
b'LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords IMMUNITY PROTEIN IM9
publication title Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Immune system
total genus 28
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2000-03-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1emvA00
2JB0A 1MZ8A 2ERHA 1FR2A 2GZJA 2WPTA 1AYIA 1GXGA 2GZGA 1CEIA 3U43A 1IMPA 2VLQA 7CEIA 4UHPB 1GXHA 1IMQA 1UNKA 2NO8A 2GZFA 2JAZA 4QKOA 4F37A 2K5XA 2GYKA 2GZIA 1EMVA 2VLOA 1ZNVA 3GKLC 2VLNA 1BXIA 1E0HA 1UJZA 2JBGA 3GJNA 2GZEA 2VLPA 5EW5E 2K0DX
chains in the Genus database with same CATH superfamily
2BUOA 2KG9A 1E6JP 4NEOA 2VSQA 3CCRP 4WYMA 1QVGO 1VHNA 4BPFA 2CWOA 2E1MA 2Z46A 1Z6MA 4XROA 1IMQA 4H2YC 1Q81Q 2MVVA 2M8NA 3CC2P 2JQ4A 1K73Q 4U0FA 2QA4P 1Q7YQ 2EHTA 1HQBA 2K92A 3OW2O 1HY8A 4XFZA 2N6ZA 2KR5A 2GZGA 1N8RQ 2GDYA 4H2WC 5F2KA 3HZQA 2K0XA 2CG5B 1KQSO 2KGCA 3G4SP 1YJ9P 3RG2A 1W2BO 2FVEA 1EIAA 1M90Q 1MZ8A 2MR7A 2PENA 3CC4P 2MF4A 1GXGA 2JU2A 2P9XA 3RG6C 5KP6B 1UNKA 2NO8A 4GR2A 1T8KA 3NTEA 1BXIA 1VQ8P 1K30A 1L0HA 2KGDA 1YIJP 2GZJA 1NQ4A 4GR6A 2XZ0D 2K94A 2LPKA 3EJBA 2XXMA 3NY7B 2OARA 1IUQA 3CCMP 2KW2A 2VLOA 5JPAA 1KD1Q 2QEXP 3CC7P 2PEOA 2M8LA 4CA3A 1A43A 1M74A 2L4BA 3G29A 1BAJA 3G1GA 3G21A 3Q20A 3VRLC 3DS1A 7CEIA 4UHPB 4H2XC 4U0EA 3WBHA 2XZ1C 3LRYA 2GZFA 2LMLA 4COPA 1QRJA 3G71P 3CD6P 1AF8A 2JBGA 2GZEA 4R0MA 2JB0A 5HVCA 2KGEA 3HYBA 2N50A 1AYIA 2AFDA 1S72P 2LL8A 2VLQA 2FQ2A 3CXCO 2X2BA 1EMVA 3GKLC 3GZMA 2JO0A 2EFJA 2LIUA 1EOQA 2XT1A 2ROQA 3B5IA 1VQ5P 2LKIA 1M6EX 4PH0A 1KC8Q 1VQOP 3H47A 2FADA 2JU1A 3I56P 2EG5A 2FAEA 2LOLA 1YJWP 3GJNA 2KG8A 2QNWA 1M1KQ 5KP8B 1VQ6P 3CMAP 2N5IA 4BPHA 2JAZA 4F37A 2FHSC 1UJZA 4XFYA 4MRTC 2FACA 4DG9A 2MVUA 2CQ8A 4PXHB 1FR2A 1VQKP 3B4QA 2PEQA 1DNYA 1YITP 1JJ2O 1IMPA 2MY5A 3CCSP 2KODA 4U0DA 1KLPA 1M6NA 1VQPP 2LIWA 2GYKA 1ZMBA 2JGPA 2FVAA 3CCLP 2L9FA 2VLNA 5DCKA 1YHQP 2BHVA 3CE7A 2AF8A 2ERHA 2L22A 1GPJA 2FVFA 2LF4A 5HV8A 1D1DA 1CEIA 3U43A 3GZLA 2KG6A 1F80D 1K8AQ 4QKOA 4XRQA 2MR8A 2EIAA 2LTEA 2XV6A 3CCVP 3G26A 1QVFO 3DTJA 1RO0A 4HKGA 2N6YA 3I55P 5HGNA 1RNIA 3CPWO 2K2QA 1VQ7P 2KOQA 1Q82Q 2KOSA 1L0IA 3CCQP 5HGLA 1E0HA 4COCA 4XFXA 2L6EA 2PEMA 3DPHA 5CZDB 3CCEP 2FQ1A 4PWVB 3P05A 5HGOA 2L0QA 2CNRA 3CCUP 2JYLA 1VQ9P 3G0VA 1OR5A 4IPYA 2JYGA 2KOPA 2PY8A 4U0CA 2GDXA 2N5HA 1VQ4P 1YI2P 2ONTA 2OTJP 3EJEA 1DV5A 2KOOA 3CCJP 2Z44A 4U0AA 2DGYA 2PEJA 3G28A 3E2DA 2KGAA 1RO2A 4PH1A 2DNWA 1YJNP 2WPTA 1A8OA 1ACPA 2Z45A 2KORA 3H0DA 1GXHA 1VQNP 2M8PA 2PNGA 5F2OA 2CGQA 2FQ0A 5EJDA 2VLPA 5KP7B 2MD9A 3M1MA 4QNBA 5BS2A 3G1IA 4U0BA 3EJDA 1VKUA 3DS3A 1Q86Q 2EHSA 3DS5A 3DS4A 5BS1A 3DS0A 2PEIA 3MGEA 3H4EA 3DS2A 5F2NA 2M5RA 4IZ6A 1ZNVA 5EW5E 3LMOA 1K9MQ 2AVAA 2K93A 5HGMA 2PEKA 1VQMP 2OTLP 2AFEA 4M0IA 2K0YA 1AUMA 3G6EP 1VQLP 2N98A 4BPGA 2K5XA 2KWLA 2GZIA 1NJIQ 5I4TG 1X3OA 2K0DX 3CMEP 2GDWA
chains in the Genus database with same CATH topology
2JB0A 1MZ8A 2ERHA 1FR2A 2GZJA 2WPTA 1AYIA 1GXGA 2GZGA 1CEIA 3U43A 1IMPA 2VLQA 7CEIA 4UHPB 1GXHA 1IMQA 1UNKA 2NO8A 2GZFA 2JAZA 4QKOA 4F37A 2K5XA 2GYKA 2GZIA 1EMVA 2VLOA 1ZNVA 3GKLC 2VLNA 1BXIA 1E0HA 1UJZA 2JBGA 3GJNA 2GZEA 2VLPA 5EW5E 2K0DX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JB0 A;  1MZ8 A;  2ERH A;  1FR2 A;  2GZJ A;  2WPT A;  1AYI A;  1GXG A;  2GZG A;  1CEI A;  3U43 A;  1IMP A;  2VLQ A;  7CEI A;  4UHP B;  1GXH A;  1IMQ A;  1UNK A;  2NO8 A;  2GZF A;  2JAZ A;  4QKO A;  4F37 A;  2K5X A;  2GYK A;  2GZI A;  1EMV A;  2VLO A;  1ZNV A;  3GKL C;  2VLN A;  1BXI A;  1E0H A;  1UJZ A;  2JBG A;  3GJN A;  2GZE A;  2VLP A;  5EW5 E;  2K0D X; 
#chains in the Genus database with same CATH topology
 2BUO A;  2KG9 A;  1E6J P;  4NEO A;  2VSQ A;  3CCR P;  4WYM A;  1QVG O;  1VHN A;  4BPF A;  2CWO A;  2E1M A;  2Z46 A;  1Z6M A;  4XRO A;  1IMQ A;  4H2Y C;  1Q81 Q;  2MVV A;  2M8N A;  3CC2 P;  2JQ4 A;  1K73 Q;  4U0F A;  2QA4 P;  1Q7Y Q;  2EHT A;  1HQB A;  2K92 A;  3OW2 O;  1HY8 A;  4XFZ A;  2N6Z A;  2KR5 A;  2GZG A;  1N8R Q;  2GDY A;  4H2W C;  5F2K A;  3HZQ A;  2K0X A;  2CG5 B;  1KQS O;  2KGC A;  3G4S P;  1YJ9 P;  3RG2 A;  1W2B O;  2FVE A;  1EIA A;  1M90 Q;  1MZ8 A;  2MR7 A;  2PEN A;  3CC4 P;  2MF4 A;  1GXG A;  2JU2 A;  2P9X A;  3RG6 C;  5KP6 B;  1UNK A;  2NO8 A;  4GR2 A;  1T8K A;  3NTE A;  1BXI A;  1VQ8 P;  1K30 A;  1L0H A;  2KGD A;  1YIJ P;  2GZJ A;  1NQ4 A;  4GR6 A;  2XZ0 D;  2K94 A;  2LPK A;  3EJB A;  2XXM A;  3NY7 B;  2OAR A;  1IUQ A;  3CCM P;  2KW2 A;  2VLO A;  5JPA A;  1KD1 Q;  2QEX P;  3CC7 P;  2PEO A;  2M8L A;  4CA3 A;  1A43 A;  1M74 A;  2L4B A;  3G29 A;  1BAJ A;  3G1G A;  3G21 A;  3Q20 A;  3VRL C;  3DS1 A;  7CEI A;  4UHP B;  4H2X C;  4U0E A;  3WBH A;  2XZ1 C;  3LRY A;  2GZF A;  2LML A;  4COP A;  1QRJ A;  3G71 P;  3CD6 P;  1AF8 A;  2JBG A;  2GZE A;  4R0M A;  2JB0 A;  5HVC A;  2KGE A;  3HYB A;  2N50 A;  1AYI A;  2AFD A;  1S72 P;  2LL8 A;  2VLQ A;  2FQ2 A;  3CXC O;  2X2B A;  1EMV A;  3GKL C;  3GZM A;  2JO0 A;  2EFJ A;  2LIU A;  1EOQ A;  2XT1 A;  2ROQ A;  3B5I A;  1VQ5 P;  2LKI A;  1M6E X;  4PH0 A;  1KC8 Q;  1VQO P;  3H47 A;  2FAD A;  2JU1 A;  3I56 P;  2EG5 A;  2FAE A;  2LOL A;  1YJW P;  3GJN A;  2KG8 A;  2QNW A;  1M1K Q;  5KP8 B;  1VQ6 P;  3CMA P;  2N5I A;  4BPH A;  2JAZ A;  4F37 A;  2FHS C;  1UJZ A;  4XFY A;  4MRT C;  2FAC A;  4DG9 A;  2MVU A;  2CQ8 A;  4PXH B;  1FR2 A;  1VQK P;  3B4Q A;  2PEQ A;  1DNY A;  1YIT P;  1JJ2 O;  1IMP A;  2MY5 A;  3CCS P;  2KOD A;  4U0D A;  1KLP A;  1M6N A;  1VQP P;  2LIW A;  2GYK A;  1ZMB A;  2JGP A;  2FVA A;  3CCL P;  2L9F A;  2VLN A;  5DCK A;  1YHQ P;  2BHV A;  3CE7 A;  2AF8 A;  2ERH A;  2L22 A;  1GPJ A;  2FVF A;  2LF4 A;  5HV8 A;  1D1D A;  1CEI A;  3U43 A;  3GZL A;  2KG6 A;  1F80 D;  1K8A Q;  4QKO A;  4XRQ A;  2MR8 A;  2EIA A;  2LTE A;  2XV6 A;  3CCV P;  3G26 A;  1QVF O;  3DTJ A;  1RO0 A;  4HKG A;  2N6Y A;  3I55 P;  5HGN A;  1RNI A;  3CPW O;  2K2Q A;  1VQ7 P;  2KOQ A;  1Q82 Q;  2KOS A;  1L0I A;  3CCQ P;  5HGL A;  1E0H A;  4COC A;  4XFX A;  2L6E A;  2PEM A;  3DPH A;  5CZD B;  3CCE P;  2FQ1 A;  4PWV B;  3P05 A;  5HGO A;  2L0Q A;  2CNR A;  3CCU P;  2JYL A;  1VQ9 P;  3G0V A;  1OR5 A;  4IPY A;  2JYG A;  2KOP A;  2PY8 A;  4U0C A;  2GDX A;  2N5H A;  1VQ4 P;  1YI2 P;  2ONT A;  2OTJ P;  3EJE A;  1DV5 A;  2KOO A;  3CCJ P;  2Z44 A;  4U0A A;  2DGY A;  2PEJ A;  3G28 A;  3E2D A;  2KGA A;  1RO2 A;  4PH1 A;  2DNW A;  1YJN P;  2WPT A;  1A8O A;  1ACP A;  2Z45 A;  2KOR A;  3H0D A;  1GXH A;  1VQN P;  2M8P A;  2PNG A;  5F2O A;  2CGQ A;  2FQ0 A;  5EJD A;  2VLP A;  5KP7 B;  2MD9 A;  3M1M A;  4QNB A;  5BS2 A;  3G1I A;  4U0B A;  3EJD A;  1VKU A;  3DS3 A;  1Q86 Q;  2EHS A;  3DS5 A;  3DS4 A;  5BS1 A;  3DS0 A;  2PEI A;  3MGE A;  3H4E A;  3DS2 A;  5F2N A;  2M5R A;  4IZ6 A;  1ZNV A;  5EW5 E;  3LMO A;  1K9M Q;  2AVA A;  2K93 A;  5HGM A;  2PEK A;  1VQM P;  2OTL P;  2AFE A;  4M0I A;  2K0Y A;  1AUM A;  3G6E P;  1VQL P;  2N98 A;  4BPG A;  2K5X A;  2KWL A;  2GZI A;  1NJI Q;  5I4T G;  1X3O A;  2K0D X;  3CME P;  2GDW A; 
#chains in the Genus database with same CATH homology
 2JB0 A;  1MZ8 A;  2ERH A;  1FR2 A;  2GZJ A;  2WPT A;  1AYI A;  1GXG A;  2GZG A;  1CEI A;  3U43 A;  1IMP A;  2VLQ A;  7CEI A;  4UHP B;  1GXH A;  1IMQ A;  1UNK A;  2NO8 A;  2GZF A;  2JAZ A;  4QKO A;  4F37 A;  2K5X A;  2GYK A;  2GZI A;  1EMV A;  2VLO A;  1ZNV A;  3GKL C;  2VLN A;  1BXI A;  1E0H A;  1UJZ A;  2JBG A;  3GJN A;  2GZE A;  2VLP A;  5EW5 E;  2K0D X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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