1EMVA

Crystal structure of colicin e9 dnase domain with its cognate immunity protein im9 (1.7 angstroms)
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
83
structure length
83
Chain Sequence
LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords IMMUNITY PROTEIN IM9
publication title Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes.
pubmed doi rcsb
source organism Escherichia coli
total genus 28
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2000-03-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1emvA00
3U43A 4UHPB 2GZJA 1MZ8A 2VLPA 1GXHA 4QKOA 2GZIA 2VLQA 5EW5E 2NO8A 2WPTA 3GKLC 2JB0A 2VLOA 1EMVA 1FR2A 2GYKA 1GXGA 2JBGA 1UNKA 2K5XA 2GZGA 2VLNA 1BXIA 1IMPA 4F37A 1CEIA 2GZEA 1AYIA 1UJZA 1IMQA 1ZNVA 2GZFA 2JAZA 2K0DX 7CEIA 3GJNA 2ERHA 1E0HA
chains in the Genus database with same CATH superfamily
1D1DA 3I56P 2VLQA 3CCQP 2KOOA 3CC7P 2VSQA 2GYKA 2LOLA 3CCUP 1ACPA 2N50A 2JYLA 1AYIA 2MD9A 3G28A 2XZ0D 4UHPB 1YJNP 3CCRP 4PH1A 4QNBA 2KGAA 1KLPA 2P9XA 2N98A 4H2YC 2PNGA 1VKUA 1JJ2O 2L6EA 2JAZA 2BUOA 2PENA 1VQOP 1KQSO 1E0HA 2JYGA 1DV5A 1L0IA 1YJ9P 2Z45A 3DS0A 2GZGA 2PY8A 2Z46A 2EHTA 1KD1Q 3RG2A 3RG6C 2ONTA 5KP7B 7CEIA 2KOSA 2ROQA 2XT1A 1L0HA 3DS1A 1GXHA 2K92A 2FADA 1HQBA 2KODA 1VHNA 1K73Q 1OR5A 4MRTC 5HV8A 3CCEP 1S72P 4H2XC 2GZEA 1YIJP 2KG8A 2KGEA 3G26A 1YITP 3Q20A 1A43A 3M1MA 4IZ6A 1VQ5P 2XZ1C 2FVAA 1VQ6P 1GPJA 4HKGA 1VQ8P 3OW2O 2E1MA 3H0DA 3G71P 4GR2A 4COPA 2JU1A 2KG9A 5DCKA 4GR6A 2LKIA 1BAJA 2FVFA 2PEJA 3H47A 3DTJA 2EG5A 2GZIA 3DS4A 5EW5E 3H4EA 2L4BA 3CC4P 1KC8Q 2GDWA 2L9FA 1QVFO 4NEOA 1VQPP 2LF4A 2KWLA 3MGEA 2N6ZA 2N6YA 1ZNVA 3CCJP 1RNIA 1VQLP 2FACA 2PEMA 2K2QA 1NJIQ 2AFDA 2FVEA 2LMLA 2PEQA 5HGMA 3HYBA 2MR8A 4U0AA 1VQNP 3CC2P 2EHSA 2FHSC 5BS2A 1W2BO 2M5RA 5KP6B 1IMQA 2PEKA 3CMEP 2AF8A 5EJDA 2CG5B 2QNWA 4H2WC 4XFYA 3B4QA 2QA4P 2WPTA 2L22A 4U0FA 1E6JP 3NY7B 5I4TG 1EOQA 2MVUA 3EJEA 3DPHA 1X3OA 2LL8A 2N5HA 2FQ2A 2KW2A 3CCMP 1NQ4A 4U0DA 1YHQP 3P05A 1N8RQ 3DS2A 2X2BA 3I55P 2JB0A 4COCA 2OTLP 1FR2A 2EIAA 1UNKA 4XFXA 2K0DX 2FQ0A 2GZFA 2LPKA 4PXHB 3G6EP 2ERHA 2N5IA 4U0EA 2DNWA 2PEOA 1M1KQ 4IPYA 2K0XA 3CCVP 4BPFA 3NTEA 2KGDA 3G4SP 3CE7A 1Q81Q 4XROA 1M74A 4F37A 2OARA 2JGPA 2LIWA 4BPGA 4PWVB 2DGYA 2K0YA 1AF8A 2KR5A 3CD6P 2JQ4A 5F2OA 2QEXP 2K94A 1VQKP 1QRJA 1YI2P 5HGLA 2FQ1A 2M8NA 2MY5A 1VQMP 4U0CA 3G0VA 4PH0A 3DS3A 3VRLC 1IUQA 2XXMA 3GJNA 3U43A 2MR7A 4QKOA 4WYMA 5JPAA 1Z6MA 2MVVA 1YJWP 5HVCA 4M0IA 5CZDB 1GXGA 1VQ4P 5BS1A 1CEIA 2CWOA 3LMOA 2AVAA 2EFJA 1DNYA 4XRQA 2GDXA 1M6NA 2GZJA 1MZ8A 2CNRA 2KOQA 1VQ7P 1Q86Q 1F80D 3GKLC 1A8OA 1Q82Q 2K5XA 2Z44A 3G1IA 2KOPA 1T8KA 1ZMBA 2KGCA 4XFZA 3EJDA 1K8AQ 3CXCO 2K93A 1M90Q 4BPHA 5HGOA 1RO2A 2LTEA 3G21A 2PEIA 2NO8A 1AUMA 2VLOA 3CMAP 2L0QA 1Q7YQ 2JU2A 3CCLP 2GDYA 3GZMA 5F2NA 1M6EX 1BXIA 4U0BA 2OTJP 1K9MQ 2LIUA 1K30A 2XV6A 2VLPA 2CQ8A 2KG6A 2AFEA 3G29A 1HY8A 1EIAA 4CA3A 3E2DA 5HGNA 2JBGA 2VLNA 2MF4A 3G1GA 1UJZA 1VQ9P 2KORA 2BHVA 3CCSP 4DG9A 2M8LA 3HZQA 4R0MA 5KP8B 2JO0A 3WBHA 3EJBA 2M8PA 3B5IA 1EMVA 2CGQA 1QVGO 3GZLA 1IMPA 3CPWO 5F2KA 1RO0A 3DS5A 2FAEA 3LRYA
chains in the Genus database with same CATH topology
3U43A 4UHPB 2GZJA 1MZ8A 2VLPA 1GXHA 4QKOA 2GZIA 2VLQA 5EW5E 2NO8A 2WPTA 3GKLC 2JB0A 2VLOA 1EMVA 1FR2A 2GYKA 1GXGA 2JBGA 1UNKA 2K5XA 2GZGA 2VLNA 1BXIA 1IMPA 4F37A 1CEIA 2GZEA 1AYIA 1UJZA 1IMQA 1ZNVA 2GZFA 2JAZA 2K0DX 7CEIA 3GJNA 2ERHA 1E0HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U43 A;  4UHP B;  2GZJ A;  1MZ8 A;  2VLP A;  1GXH A;  4QKO A;  2GZI A;  2VLQ A;  5EW5 E;  2NO8 A;  2WPT A;  3GKL C;  2JB0 A;  2VLO A;  1EMV A;  1FR2 A;  2GYK A;  1GXG A;  2JBG A;  1UNK A;  2K5X A;  2GZG A;  2VLN A;  1BXI A;  1IMP A;  4F37 A;  1CEI A;  2GZE A;  1AYI A;  1UJZ A;  1IMQ A;  1ZNV A;  2GZF A;  2JAZ A;  2K0D X;  7CEI A;  3GJN A;  2ERH A;  1E0H A; 
#chains in the Genus database with same CATH topology
 1D1D A;  3I56 P;  2VLQ A;  3CCQ P;  2KOO A;  3CC7 P;  2VSQ A;  2GYK A;  2LOL A;  3CCU P;  1ACP A;  2N50 A;  2JYL A;  1AYI A;  2MD9 A;  3G28 A;  2XZ0 D;  4UHP B;  1YJN P;  3CCR P;  4PH1 A;  4QNB A;  2KGA A;  1KLP A;  2P9X A;  2N98 A;  4H2Y C;  2PNG A;  1VKU A;  1JJ2 O;  2L6E A;  2JAZ A;  2BUO A;  2PEN A;  1VQO P;  1KQS O;  1E0H A;  2JYG A;  1DV5 A;  1L0I A;  1YJ9 P;  2Z45 A;  3DS0 A;  2GZG A;  2PY8 A;  2Z46 A;  2EHT A;  1KD1 Q;  3RG2 A;  3RG6 C;  2ONT A;  5KP7 B;  7CEI A;  2KOS A;  2ROQ A;  2XT1 A;  1L0H A;  3DS1 A;  1GXH A;  2K92 A;  2FAD A;  1HQB A;  2KOD A;  1VHN A;  1K73 Q;  1OR5 A;  4MRT C;  5HV8 A;  3CCE P;  1S72 P;  4H2X C;  2GZE A;  1YIJ P;  2KG8 A;  2KGE A;  3G26 A;  1YIT P;  3Q20 A;  1A43 A;  3M1M A;  4IZ6 A;  1VQ5 P;  2XZ1 C;  2FVA A;  1VQ6 P;  1GPJ A;  4HKG A;  1VQ8 P;  3OW2 O;  2E1M A;  3H0D A;  3G71 P;  4GR2 A;  4COP A;  2JU1 A;  2KG9 A;  5DCK A;  4GR6 A;  2LKI A;  1BAJ A;  2FVF A;  2PEJ A;  3H47 A;  3DTJ A;  2EG5 A;  2GZI A;  3DS4 A;  5EW5 E;  3H4E A;  2L4B A;  3CC4 P;  1KC8 Q;  2GDW A;  2L9F A;  1QVF O;  4NEO A;  1VQP P;  2LF4 A;  2KWL A;  3MGE A;  2N6Z A;  2N6Y A;  1ZNV A;  3CCJ P;  1RNI A;  1VQL P;  2FAC A;  2PEM A;  2K2Q A;  1NJI Q;  2AFD A;  2FVE A;  2LML A;  2PEQ A;  5HGM A;  3HYB A;  2MR8 A;  4U0A A;  1VQN P;  3CC2 P;  2EHS A;  2FHS C;  5BS2 A;  1W2B O;  2M5R A;  5KP6 B;  1IMQ A;  2PEK A;  3CME P;  2AF8 A;  5EJD A;  2CG5 B;  2QNW A;  4H2W C;  4XFY A;  3B4Q A;  2QA4 P;  2WPT A;  2L22 A;  4U0F A;  1E6J P;  3NY7 B;  5I4T G;  1EOQ A;  2MVU A;  3EJE A;  3DPH A;  1X3O A;  2LL8 A;  2N5H A;  2FQ2 A;  2KW2 A;  3CCM P;  1NQ4 A;  4U0D A;  1YHQ P;  3P05 A;  1N8R Q;  3DS2 A;  2X2B A;  3I55 P;  2JB0 A;  4COC A;  2OTL P;  1FR2 A;  2EIA A;  1UNK A;  4XFX A;  2K0D X;  2FQ0 A;  2GZF A;  2LPK A;  4PXH B;  3G6E P;  2ERH A;  2N5I A;  4U0E A;  2DNW A;  2PEO A;  1M1K Q;  4IPY A;  2K0X A;  3CCV P;  4BPF A;  3NTE A;  2KGD A;  3G4S P;  3CE7 A;  1Q81 Q;  4XRO A;  1M74 A;  4F37 A;  2OAR A;  2JGP A;  2LIW A;  4BPG A;  4PWV B;  2DGY A;  2K0Y A;  1AF8 A;  2KR5 A;  3CD6 P;  2JQ4 A;  5F2O A;  2QEX P;  2K94 A;  1VQK P;  1QRJ A;  1YI2 P;  5HGL A;  2FQ1 A;  2M8N A;  2MY5 A;  1VQM P;  4U0C A;  3G0V A;  4PH0 A;  3DS3 A;  3VRL C;  1IUQ A;  2XXM A;  3GJN A;  3U43 A;  2MR7 A;  4QKO A;  4WYM A;  5JPA A;  1Z6M A;  2MVV A;  1YJW P;  5HVC A;  4M0I A;  5CZD B;  1GXG A;  1VQ4 P;  5BS1 A;  1CEI A;  2CWO A;  3LMO A;  2AVA A;  2EFJ A;  1DNY A;  4XRQ A;  2GDX A;  1M6N A;  2GZJ A;  1MZ8 A;  2CNR A;  2KOQ A;  1VQ7 P;  1Q86 Q;  1F80 D;  3GKL C;  1A8O A;  1Q82 Q;  2K5X A;  2Z44 A;  3G1I A;  2KOP A;  1T8K A;  1ZMB A;  2KGC A;  4XFZ A;  3EJD A;  1K8A Q;  3CXC O;  2K93 A;  1M90 Q;  4BPH A;  5HGO A;  1RO2 A;  2LTE A;  3G21 A;  2PEI A;  2NO8 A;  1AUM A;  2VLO A;  3CMA P;  2L0Q A;  1Q7Y Q;  2JU2 A;  3CCL P;  2GDY A;  3GZM A;  5F2N A;  1M6E X;  1BXI A;  4U0B A;  2OTJ P;  1K9M Q;  2LIU A;  1K30 A;  2XV6 A;  2VLP A;  2CQ8 A;  2KG6 A;  2AFE A;  3G29 A;  1HY8 A;  1EIA A;  4CA3 A;  3E2D A;  5HGN A;  2JBG A;  2VLN A;  2MF4 A;  3G1G A;  1UJZ A;  1VQ9 P;  2KOR A;  2BHV A;  3CCS P;  4DG9 A;  2M8L A;  3HZQ A;  4R0M A;  5KP8 B;  2JO0 A;  3WBH A;  3EJB A;  2M8P A;  3B5I A;  1EMV A;  2CGQ A;  1QVG O;  3GZL A;  1IMP A;  3CPW O;  5F2K A;  1RO0 A;  3DS5 A;  2FAE A;  3LRY A; 
#chains in the Genus database with same CATH homology
 3U43 A;  4UHP B;  2GZJ A;  1MZ8 A;  2VLP A;  1GXH A;  4QKO A;  2GZI A;  2VLQ A;  5EW5 E;  2NO8 A;  2WPT A;  3GKL C;  2JB0 A;  2VLO A;  1EMV A;  1FR2 A;  2GYK A;  1GXG A;  2JBG A;  1UNK A;  2K5X A;  2GZG A;  2VLN A;  1BXI A;  1IMP A;  4F37 A;  1CEI A;  2GZE A;  1AYI A;  1UJZ A;  1IMQ A;  1ZNV A;  2GZF A;  2JAZ A;  2K0D X;  7CEI A;  3GJN A;  2ERH A;  1E0H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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