1EMVA

Crystal structure of colicin e9 dnase domain with its cognate immunity protein im9 (1.7 angstroms)
Total Genus 28
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
83
structure length
83
Chain Sequence
LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords IMMUNITY PROTEIN IM9
publication title Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Immune system
total genus 28
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2000-03-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1emvA00
2JBGA 1IMQA 3GKLC 2GYKA 4F37A 2K5XA 1GXGA 1BXIA 2GZIA 2GZFA 2VLQA 2VLNA 3GJNA 1ZNVA 2NO8A 1AYIA 1UJZA 4QKOA 2ERHA 2K0DX 5EW5E 1E0HA 1UNKA 2JAZA 1FR2A 2GZJA 2JB0A 1GXHA 1MZ8A 2VLOA 2GZEA 2GZGA 2VLPA 1IMPA 7CEIA 1CEIA 2WPTA 4UHPB 1EMVA 3U43A
chains in the Genus database with same CATH superfamily
2JBGA 5KP6B 5F2OA 2GDXA 3EJDA 2Z45A 1KC8Q 3DS5A 1ZNVA 1UJZA 1GPJA 4U0CA 1E0HA 2Z46A 1Q7YQ 1FR2A 2PEKA 2JB0A 1K30A 2VLOA 2LPKA 2GDWA 2LL8A 4BPGA 1L0HA 3CPWO 2GYKA 2K2QA 2KG6A 1K8AQ 2GZFA 3HYBA 2N98A 3M1MA 1KQSO 2PENA 3CCLP 2MVUA 3VRLC 4BPFA 4QNBA 4PXHB 7CEIA 2WPTA 4IZ6A 4H2YC 2FHSC 3HZQA 2AF8A 4PWVB 1Q81Q 2LIUA 2NO8A 4MRTC 5I4TG 2CGQA 4U0DA 2DNWA 1UNKA 2PEOA 5DCKA 2PEIA 2KOPA 1GXHA 3I55P 4U0EA 1EMVA 2M5RA 3GKLC 1OR5A 4H2WC 1A43A 5CZDB 4NEOA 3H4EA 3B5IA 1S72P 1VHNA 2PY8A 1VQMP 3G6EP 1BAJA 5F2NA 2MVVA 1Q82Q 1RO2A 2EIAA 1MZ8A 3CCRP 3DS1A 1QRJA 3RG2A 1VQ6P 2GDYA 1M1KQ 5F2KA 4UHPB 2M8NA 1NJIQ 1KLPA 2XZ0D 3GJNA 4M0IA 2FAEA 3I56P 1VQPP 2XV6A 1K73Q 2N6ZA 4XFXA 3WBHA 3GZMA 2OTLP 3P05A 4BPHA 1VQ7P 2MY5A 2QA4P 1DV5A 2QEXP 3DPHA 1NQ4A 2FVFA 1YITP 3E2DA 3CCVP 1VQ4P 2L4BA 2KOSA 3DS0A 4U0BA 3NY7B 2FACA 2K0XA 5KP7B 3CXCO 2L0QA 2M8PA 2PEJA 1IUQA 1VQLP 2XZ1C 1M6EX 3DS2A 1VQ9P 3H0DA 2X2BA 3CCSP 2N50A 5KP8B 2KG8A 2PEMA 3DTJA 2VLNA 1X3OA 4XFYA 5HV8A 4QKOA 3G21A 1Q86Q 1AUMA 2KWLA 2JAZA 2KGEA 1E6JP 4XROA 1M6NA 3GZLA 1IMPA 3U43A 3CCMP 3CCUP 4PH0A 3Q20A 2EHTA 3G4SP 3DS4A 2M8LA 1YHQP 4WYMA 2MD9A 4DG9A 3EJEA 2KORA 5EJDA 2L6EA 1DNYA 3B4QA 2BHVA 3EJBA 2JYGA 1IMQA 1A8OA 2LF4A 3G26A 1RO0A 2K0YA 1M90Q 5HGNA 5HGOA 2P9XA 2VLQA 2PEQA 1N8RQ 3CD6P 2ERHA 5EW5E 3CMAP 2KW2A 2LTEA 4U0FA 2K92A 2QNWA 2XT1A 3G1IA 1T8KA 5HGLA 3LRYA 1EIAA 2FVAA 2L22A 4IPYA 3MGEA 2EG5A 3G1GA 3CC7P 2AFDA 2VLPA 2GZGA 1EOQA 2KG9A 2JQ4A 1W2BO 2Z44A 2KGAA 2LIWA 1YJNP 3CCQP 2KOOA 2JYLA 4PH1A 3CC2P 4COPA 1AYIA 2FQ2A 3CC4P 1KD1Q 3OW2O 3NTEA 2GZJA 1VQ8P 2MR7A 2FVEA 1YI2P 2LMLA 3DS3A 3G0VA 5HGMA 3H47A 2MF4A 2AFEA 2OTJP 2E1MA 1VQ5P 4HKGA 2LOLA 2CQ8A 3RG6C 2LKIA 1K9MQ 2JO0A 1CEIA 2EHSA 2FADA 1VQNP 1M74A 2JU2A 2KOQA 1VKUA 1HY8A 4COCA 1YIJP 2CNRA 4F37A 1BXIA 1HQBA 3CE7A 1JJ2O 2AVAA 2K94A 5BS2A 2DGYA 3CCJP 4CA3A 2KGDA 2N5IA 1L0IA 4U0AA 2GZIA 3G29A 2EFJA 1VQKP 2ONTA 2ROQA 2KR5A 1QVFO 2PNGA 2VSQA 4XRQA 4GR6A 1RNIA 2CWOA 2XXMA 5JPAA 1AF8A 1ZMBA 1ACPA 1VQOP 2BUOA 2JGPA 2MR8A 2KODA 3G71P 2K5XA 2FQ1A 4H2XC 3CCEP 4XFZA 5HVCA 1YJWP 1YJ9P 2FQ0A 2CG5B 1QVGO 2N5HA 3CMEP 3LMOA 5BS1A 1GXGA 2L9FA 1D1DA 2K0DX 4R0MA 3G28A 2N6YA 2GZEA 2KGCA 2JU1A 1F80D 1Z6MA 2K93A 4GR2A 2OARA
chains in the Genus database with same CATH topology
2JBGA 1IMQA 3GKLC 2GYKA 4F37A 2K5XA 1GXGA 1BXIA 2GZIA 2GZFA 2VLQA 2VLNA 3GJNA 1ZNVA 2NO8A 1AYIA 1UJZA 4QKOA 2ERHA 2K0DX 5EW5E 1E0HA 1UNKA 2JAZA 1FR2A 2GZJA 2JB0A 1GXHA 1MZ8A 2VLOA 2GZEA 2GZGA 2VLPA 1IMPA 7CEIA 1CEIA 2WPTA 4UHPB 1EMVA 3U43A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JBG A;  1IMQ A;  3GKL C;  2GYK A;  4F37 A;  2K5X A;  1GXG A;  1BXI A;  2GZI A;  2GZF A;  2VLQ A;  2VLN A;  3GJN A;  1ZNV A;  2NO8 A;  1AYI A;  1UJZ A;  4QKO A;  2ERH A;  2K0D X;  5EW5 E;  1E0H A;  1UNK A;  2JAZ A;  1FR2 A;  2GZJ A;  2JB0 A;  1GXH A;  1MZ8 A;  2VLO A;  2GZE A;  2GZG A;  2VLP A;  1IMP A;  7CEI A;  1CEI A;  2WPT A;  4UHP B;  1EMV A;  3U43 A; 
#chains in the Genus database with same CATH topology
 2JBG A;  5KP6 B;  5F2O A;  2GDX A;  3EJD A;  2Z45 A;  1KC8 Q;  3DS5 A;  1ZNV A;  1UJZ A;  1GPJ A;  4U0C A;  1E0H A;  2Z46 A;  1Q7Y Q;  1FR2 A;  2PEK A;  2JB0 A;  1K30 A;  2VLO A;  2LPK A;  2GDW A;  2LL8 A;  4BPG A;  1L0H A;  3CPW O;  2GYK A;  2K2Q A;  2KG6 A;  1K8A Q;  2GZF A;  3HYB A;  2N98 A;  3M1M A;  1KQS O;  2PEN A;  3CCL P;  2MVU A;  3VRL C;  4BPF A;  4QNB A;  4PXH B;  7CEI A;  2WPT A;  4IZ6 A;  4H2Y C;  2FHS C;  3HZQ A;  2AF8 A;  4PWV B;  1Q81 Q;  2LIU A;  2NO8 A;  4MRT C;  5I4T G;  2CGQ A;  4U0D A;  2DNW A;  1UNK A;  2PEO A;  5DCK A;  2PEI A;  2KOP A;  1GXH A;  3I55 P;  4U0E A;  1EMV A;  2M5R A;  3GKL C;  1OR5 A;  4H2W C;  1A43 A;  5CZD B;  4NEO A;  3H4E A;  3B5I A;  1S72 P;  1VHN A;  2PY8 A;  1VQM P;  3G6E P;  1BAJ A;  5F2N A;  2MVV A;  1Q82 Q;  1RO2 A;  2EIA A;  1MZ8 A;  3CCR P;  3DS1 A;  1QRJ A;  3RG2 A;  1VQ6 P;  2GDY A;  1M1K Q;  5F2K A;  4UHP B;  2M8N A;  1NJI Q;  1KLP A;  2XZ0 D;  3GJN A;  4M0I A;  2FAE A;  3I56 P;  1VQP P;  2XV6 A;  1K73 Q;  2N6Z A;  4XFX A;  3WBH A;  3GZM A;  2OTL P;  3P05 A;  4BPH A;  1VQ7 P;  2MY5 A;  2QA4 P;  1DV5 A;  2QEX P;  3DPH A;  1NQ4 A;  2FVF A;  1YIT P;  3E2D A;  3CCV P;  1VQ4 P;  2L4B A;  2KOS A;  3DS0 A;  4U0B A;  3NY7 B;  2FAC A;  2K0X A;  5KP7 B;  3CXC O;  2L0Q A;  2M8P A;  2PEJ A;  1IUQ A;  1VQL P;  2XZ1 C;  1M6E X;  3DS2 A;  1VQ9 P;  3H0D A;  2X2B A;  3CCS P;  2N50 A;  5KP8 B;  2KG8 A;  2PEM A;  3DTJ A;  2VLN A;  1X3O A;  4XFY A;  5HV8 A;  4QKO A;  3G21 A;  1Q86 Q;  1AUM A;  2KWL A;  2JAZ A;  2KGE A;  1E6J P;  4XRO A;  1M6N A;  3GZL A;  1IMP A;  3U43 A;  3CCM P;  3CCU P;  4PH0 A;  3Q20 A;  2EHT A;  3G4S P;  3DS4 A;  2M8L A;  1YHQ P;  4WYM A;  2MD9 A;  4DG9 A;  3EJE A;  2KOR A;  5EJD A;  2L6E A;  1DNY A;  3B4Q A;  2BHV A;  3EJB A;  2JYG A;  1IMQ A;  1A8O A;  2LF4 A;  3G26 A;  1RO0 A;  2K0Y A;  1M90 Q;  5HGN A;  5HGO A;  2P9X A;  2VLQ A;  2PEQ A;  1N8R Q;  3CD6 P;  2ERH A;  5EW5 E;  3CMA P;  2KW2 A;  2LTE A;  4U0F A;  2K92 A;  2QNW A;  2XT1 A;  3G1I A;  1T8K A;  5HGL A;  3LRY A;  1EIA A;  2FVA A;  2L22 A;  4IPY A;  3MGE A;  2EG5 A;  3G1G A;  3CC7 P;  2AFD A;  2VLP A;  2GZG A;  1EOQ A;  2KG9 A;  2JQ4 A;  1W2B O;  2Z44 A;  2KGA A;  2LIW A;  1YJN P;  3CCQ P;  2KOO A;  2JYL A;  4PH1 A;  3CC2 P;  4COP A;  1AYI A;  2FQ2 A;  3CC4 P;  1KD1 Q;  3OW2 O;  3NTE A;  2GZJ A;  1VQ8 P;  2MR7 A;  2FVE A;  1YI2 P;  2LML A;  3DS3 A;  3G0V A;  5HGM A;  3H47 A;  2MF4 A;  2AFE A;  2OTJ P;  2E1M A;  1VQ5 P;  4HKG A;  2LOL A;  2CQ8 A;  3RG6 C;  2LKI A;  1K9M Q;  2JO0 A;  1CEI A;  2EHS A;  2FAD A;  1VQN P;  1M74 A;  2JU2 A;  2KOQ A;  1VKU A;  1HY8 A;  4COC A;  1YIJ P;  2CNR A;  4F37 A;  1BXI A;  1HQB A;  3CE7 A;  1JJ2 O;  2AVA A;  2K94 A;  5BS2 A;  2DGY A;  3CCJ P;  4CA3 A;  2KGD A;  2N5I A;  1L0I A;  4U0A A;  2GZI A;  3G29 A;  2EFJ A;  1VQK P;  2ONT A;  2ROQ A;  2KR5 A;  1QVF O;  2PNG A;  2VSQ A;  4XRQ A;  4GR6 A;  1RNI A;  2CWO A;  2XXM A;  5JPA A;  1AF8 A;  1ZMB A;  1ACP A;  1VQO P;  2BUO A;  2JGP A;  2MR8 A;  2KOD A;  3G71 P;  2K5X A;  2FQ1 A;  4H2X C;  3CCE P;  4XFZ A;  5HVC A;  1YJW P;  1YJ9 P;  2FQ0 A;  2CG5 B;  1QVG O;  2N5H A;  3CME P;  3LMO A;  5BS1 A;  1GXG A;  2L9F A;  1D1D A;  2K0D X;  4R0M A;  3G28 A;  2N6Y A;  2GZE A;  2KGC A;  2JU1 A;  1F80 D;  1Z6M A;  2K93 A;  4GR2 A;  2OAR A; 
#chains in the Genus database with same CATH homology
 2JBG A;  1IMQ A;  3GKL C;  2GYK A;  4F37 A;  2K5X A;  1GXG A;  1BXI A;  2GZI A;  2GZF A;  2VLQ A;  2VLN A;  3GJN A;  1ZNV A;  2NO8 A;  1AYI A;  1UJZ A;  4QKO A;  2ERH A;  2K0D X;  5EW5 E;  1E0H A;  1UNK A;  2JAZ A;  1FR2 A;  2GZJ A;  2JB0 A;  1GXH A;  1MZ8 A;  2VLO A;  2GZE A;  2GZG A;  2VLP A;  1IMP A;  7CEI A;  1CEI A;  2WPT A;  4UHP B;  1EMV A;  3U43 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...