2GZFA

Crystal structure of the e9 dnase domain with a mutant immunity protein im9 (y54f)
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
82
structure length
82
Chain Sequence
KHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIFYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the Complex of the Colicin E9 DNase Domain with a Mutant Immunity Protein, IM9 (Y54F)
rcsb
molecule tags Antibiotic/antibiotic inhibitor
source organism Escherichia coli k12
molecule keywords Colicin-E9 immunity protein
total genus 28
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2006-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2gzfA00
2GZIA 2VLOA 3GKLC 2JB0A 2K5XA 1CEIA 2GZJA 4UHPB 1BXIA 2JBGA 1UNKA 2WPTA 1GXHA 1IMQA 1MZ8A 4QKOA 2GYKA 2GZEA 1GXGA 2JAZA 5EW5E 1UJZA 2VLPA 4F37A 1AYIA 2GZFA 2GZGA 2NO8A 2VLNA 1FR2A 2ERHA 2K0DX 1EMVA 3GJNA 1IMPA 7CEIA 1ZNVA 3U43A 1E0HA 2VLQA
chains in the Genus database with same CATH superfamily
1A43A 1VQMP 2K94A 2N98A 2M8NA 1YJ9P 3MGEA 3LMOA 4XFYA 1VQPP 4XRQA 5F2NA 2JQ4A 5F2OA 2XV6A 2PEKA 1VQ7P 5DCKA 1GPJA 1E0HA 2FQ1A 3H0DA 1HQBA 4U0AA 4BPHA 4UHPB 3G4SP 1VQ4P 2AFEA 2MVVA 3CD6P 4QKOA 2GDWA 2JAZA 2JU2A 3G6EP 2ERHA 1A8OA 2AFDA 3G1GA 2Z45A 4XROA 2L4BA 2AVAA 2FVEA 2GYKA 3CMEP 1L0IA 3DS0A 3DS3A 4U0CA 1FR2A 3HYBA 4U0BA 2PEIA 5BS2A 2LIUA 2JYGA 1AF8A 2FVAA 2FQ0A 2LL8A 1IMPA 3GZLA 3U43A 1KQSO 3DTJA 5HGOA 2QEXP 3RG2A 5KP8B 2GZJA 4IZ6A 4H2WC 2CQ8A 4BPFA 4BPGA 1KC8Q 1GXHA 1IMQA 2FQ2A 4QNBA 4F37A 5HGNA 2GZGA 3G21A 2FADA 1EMVA 3I55P 2VLQA 3Q20A 2OARA 2JB0A 2QA4P 4U0FA 3CCQP 4PH1A 2GZFA 2AF8A 2LIWA 2PY8A 2M8LA 3E2DA 2KGAA 3HZQA 5KP6B 2LMLA 3CCRP 2MF4A 3EJDA 2FHSC 1K9MQ 1VQKP 2LOLA 3CE7A 2CWOA 2N5HA 3H47A 2FVFA 2KGDA 2PEMA 2KG8A 3CCLP 1YJNP 5KP7B 2KW2A 1ACPA 4HKGA 1VQ8P 5JPAA 2GZIA 3RG6C 2CG5B 2EHTA 2DNWA 2JBGA 5BS1A 2JYLA 5HGMA 2KGCA 4H2YC 1YI2P 3EJEA 1M6NA 2MVUA 2GDXA 4U0EA 3CCUP 1M1KQ 1ZMBA 4DG9A 2VSQA 3NY7B 1K73Q 3DS5A 3NTEA 1T8KA 2KODA 1UNKA 1VQ6P 2WPTA 4COPA 1N8RQ 2GZEA 2K0YA 5EW5E 4M0IA 1VQNP 2VLPA 5CZDB 3CC4P 3DS2A 2N50A 2M8PA 4IPYA 1KLPA 2QNWA 2E1MA 2L0QA 4R0MA 2JGPA 2EIAA 1VQOP 1VKUA 2K2QA 3WBHA 1F80D 2ONTA 1YJWP 2CNRA 1Q7YQ 1OR5A 2CGQA 2PEOA 5F2KA 1X3OA 2XT1A 2BHVA 2VLNA 1KD1Q 4COCA 2KOSA 5HV8A 3CCMP 2KOPA 3G26A 3M1MA 1YITP 1NJIQ 1Q86Q 3GKLC 2KG9A 1CEIA 1Q82Q 1VQLP 2MR8A 2Z44A 2KR5A 1GXGA 2K93A 2OTJP 3VRLC 3B5IA 5I4TG 1NQ4A 4CA3A 1EIAA 3G29A 2KOQA 4NEOA 1JJ2O 2N6YA 2VLOA 2DGYA 1D1DA 1EOQA 1M90Q 2LF4A 3DS4A 1AYIA 4PXHB 3CMAP 1QRJA 4U0DA 2K0XA 2JO0A 3GJNA 2LTEA 7CEIA 1QVGO 2LKIA 2P9XA 3CC2P 3I56P 2X2BA 3H4EA 1BXIA 4PH0A 1IUQA 1K30A 2XZ0D 1RO2A 3CCEP 2ROQA 2FACA 5EJDA 4XFXA 3G1IA 4XFZA 1ZNVA 1RNIA 2L9FA 2KGEA 2K5XA 2PEQA 3LRYA 1HY8A 1RO0A 3CXCO 2XZ1C 1E6JP 1L0HA 1VQ5P 1S72P 4H2XC 3EJBA 2FAEA 2NO8A 3OW2O 1BAJA 2EFJA 2EG5A 2K0DX 3P05A 2L22A 1K8AQ 3CCVP 1Q81Q 4GR6A 2KORA 2Z46A 2BUOA 2PEJA 3G0VA 2LPKA 1DV5A 3G28A 1Z6MA 2N6ZA 3GZMA 3G71P 4MRTC 1YIJP 2KOOA 2PENA 2KWLA 1M6EX 5HVCA 1VHNA 3CCJP 4GR2A 5HGLA 2KG6A 2OTLP 1UJZA 2PNGA 1VQ9P 2MD9A 2MR7A 2MY5A 1AUMA 1W2BO 4WYMA 2K92A 1YHQP 1DNYA 2M5RA 3B4QA 2XXMA 2L6EA 1MZ8A 2GDYA 3CPWO 3DS1A 3CCSP 2EHSA 1QVFO 3CC7P 3DPHA 4PWVB 1M74A 2N5IA 2JU1A
chains in the Genus database with same CATH topology
2GZIA 2VLOA 3GKLC 2JB0A 2K5XA 1CEIA 2GZJA 4UHPB 1BXIA 2JBGA 1UNKA 2WPTA 1GXHA 1IMQA 1MZ8A 4QKOA 2GYKA 2GZEA 1GXGA 2JAZA 5EW5E 1UJZA 2VLPA 4F37A 1AYIA 2GZFA 2GZGA 2NO8A 2VLNA 1FR2A 2ERHA 2K0DX 1EMVA 3GJNA 1IMPA 7CEIA 1ZNVA 3U43A 1E0HA 2VLQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GZI A;  2VLO A;  3GKL C;  2JB0 A;  2K5X A;  1CEI A;  2GZJ A;  4UHP B;  1BXI A;  2JBG A;  1UNK A;  2WPT A;  1GXH A;  1IMQ A;  1MZ8 A;  4QKO A;  2GYK A;  2GZE A;  1GXG A;  2JAZ A;  5EW5 E;  1UJZ A;  2VLP A;  4F37 A;  1AYI A;  2GZF A;  2GZG A;  2NO8 A;  2VLN A;  1FR2 A;  2ERH A;  2K0D X;  1EMV A;  3GJN A;  1IMP A;  7CEI A;  1ZNV A;  3U43 A;  1E0H A;  2VLQ A; 
#chains in the Genus database with same CATH topology
 1A43 A;  1VQM P;  2K94 A;  2N98 A;  2M8N A;  1YJ9 P;  3MGE A;  3LMO A;  4XFY A;  1VQP P;  4XRQ A;  5F2N A;  2JQ4 A;  5F2O A;  2XV6 A;  2PEK A;  1VQ7 P;  5DCK A;  1GPJ A;  1E0H A;  2FQ1 A;  3H0D A;  1HQB A;  4U0A A;  4BPH A;  4UHP B;  3G4S P;  1VQ4 P;  2AFE A;  2MVV A;  3CD6 P;  4QKO A;  2GDW A;  2JAZ A;  2JU2 A;  3G6E P;  2ERH A;  1A8O A;  2AFD A;  3G1G A;  2Z45 A;  4XRO A;  2L4B A;  2AVA A;  2FVE A;  2GYK A;  3CME P;  1L0I A;  3DS0 A;  3DS3 A;  4U0C A;  1FR2 A;  3HYB A;  4U0B A;  2PEI A;  5BS2 A;  2LIU A;  2JYG A;  1AF8 A;  2FVA A;  2FQ0 A;  2LL8 A;  1IMP A;  3GZL A;  3U43 A;  1KQS O;  3DTJ A;  5HGO A;  2QEX P;  3RG2 A;  5KP8 B;  2GZJ A;  4IZ6 A;  4H2W C;  2CQ8 A;  4BPF A;  4BPG A;  1KC8 Q;  1GXH A;  1IMQ A;  2FQ2 A;  4QNB A;  4F37 A;  5HGN A;  2GZG A;  3G21 A;  2FAD A;  1EMV A;  3I55 P;  2VLQ A;  3Q20 A;  2OAR A;  2JB0 A;  2QA4 P;  4U0F A;  3CCQ P;  4PH1 A;  2GZF A;  2AF8 A;  2LIW A;  2PY8 A;  2M8L A;  3E2D A;  2KGA A;  3HZQ A;  5KP6 B;  2LML A;  3CCR P;  2MF4 A;  3EJD A;  2FHS C;  1K9M Q;  1VQK P;  2LOL A;  3CE7 A;  2CWO A;  2N5H A;  3H47 A;  2FVF A;  2KGD A;  2PEM A;  2KG8 A;  3CCL P;  1YJN P;  5KP7 B;  2KW2 A;  1ACP A;  4HKG A;  1VQ8 P;  5JPA A;  2GZI A;  3RG6 C;  2CG5 B;  2EHT A;  2DNW A;  2JBG A;  5BS1 A;  2JYL A;  5HGM A;  2KGC A;  4H2Y C;  1YI2 P;  3EJE A;  1M6N A;  2MVU A;  2GDX A;  4U0E A;  3CCU P;  1M1K Q;  1ZMB A;  4DG9 A;  2VSQ A;  3NY7 B;  1K73 Q;  3DS5 A;  3NTE A;  1T8K A;  2KOD A;  1UNK A;  1VQ6 P;  2WPT A;  4COP A;  1N8R Q;  2GZE A;  2K0Y A;  5EW5 E;  4M0I A;  1VQN P;  2VLP A;  5CZD B;  3CC4 P;  3DS2 A;  2N50 A;  2M8P A;  4IPY A;  1KLP A;  2QNW A;  2E1M A;  2L0Q A;  4R0M A;  2JGP A;  2EIA A;  1VQO P;  1VKU A;  2K2Q A;  3WBH A;  1F80 D;  2ONT A;  1YJW P;  2CNR A;  1Q7Y Q;  1OR5 A;  2CGQ A;  2PEO A;  5F2K A;  1X3O A;  2XT1 A;  2BHV A;  2VLN A;  1KD1 Q;  4COC A;  2KOS A;  5HV8 A;  3CCM P;  2KOP A;  3G26 A;  3M1M A;  1YIT P;  1NJI Q;  1Q86 Q;  3GKL C;  2KG9 A;  1CEI A;  1Q82 Q;  1VQL P;  2MR8 A;  2Z44 A;  2KR5 A;  1GXG A;  2K93 A;  2OTJ P;  3VRL C;  3B5I A;  5I4T G;  1NQ4 A;  4CA3 A;  1EIA A;  3G29 A;  2KOQ A;  4NEO A;  1JJ2 O;  2N6Y A;  2VLO A;  2DGY A;  1D1D A;  1EOQ A;  1M90 Q;  2LF4 A;  3DS4 A;  1AYI A;  4PXH B;  3CMA P;  1QRJ A;  4U0D A;  2K0X A;  2JO0 A;  3GJN A;  2LTE A;  7CEI A;  1QVG O;  2LKI A;  2P9X A;  3CC2 P;  3I56 P;  2X2B A;  3H4E A;  1BXI A;  4PH0 A;  1IUQ A;  1K30 A;  2XZ0 D;  1RO2 A;  3CCE P;  2ROQ A;  2FAC A;  5EJD A;  4XFX A;  3G1I A;  4XFZ A;  1ZNV A;  1RNI A;  2L9F A;  2KGE A;  2K5X A;  2PEQ A;  3LRY A;  1HY8 A;  1RO0 A;  3CXC O;  2XZ1 C;  1E6J P;  1L0H A;  1VQ5 P;  1S72 P;  4H2X C;  3EJB A;  2FAE A;  2NO8 A;  3OW2 O;  1BAJ A;  2EFJ A;  2EG5 A;  2K0D X;  3P05 A;  2L22 A;  1K8A Q;  3CCV P;  1Q81 Q;  4GR6 A;  2KOR A;  2Z46 A;  2BUO A;  2PEJ A;  3G0V A;  2LPK A;  1DV5 A;  3G28 A;  1Z6M A;  2N6Z A;  3GZM A;  3G71 P;  4MRT C;  1YIJ P;  2KOO A;  2PEN A;  2KWL A;  1M6E X;  5HVC A;  1VHN A;  3CCJ P;  4GR2 A;  5HGL A;  2KG6 A;  2OTL P;  1UJZ A;  2PNG A;  1VQ9 P;  2MD9 A;  2MR7 A;  2MY5 A;  1AUM A;  1W2B O;  4WYM A;  2K92 A;  1YHQ P;  1DNY A;  2M5R A;  3B4Q A;  2XXM A;  2L6E A;  1MZ8 A;  2GDY A;  3CPW O;  3DS1 A;  3CCS P;  2EHS A;  1QVF O;  3CC7 P;  3DPH A;  4PWV B;  1M74 A;  2N5I A;  2JU1 A; 
#chains in the Genus database with same CATH homology
 2GZI A;  2VLO A;  3GKL C;  2JB0 A;  2K5X A;  1CEI A;  2GZJ A;  4UHP B;  1BXI A;  2JBG A;  1UNK A;  2WPT A;  1GXH A;  1IMQ A;  1MZ8 A;  4QKO A;  2GYK A;  2GZE A;  1GXG A;  2JAZ A;  5EW5 E;  1UJZ A;  2VLP A;  4F37 A;  1AYI A;  2GZF A;  2GZG A;  2NO8 A;  2VLN A;  1FR2 A;  2ERH A;  2K0D X;  1EMV A;  3GJN A;  1IMP A;  7CEI A;  1ZNV A;  3U43 A;  1E0H A;  2VLQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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