4GR2A

Structure of atrbcx1 from arabidopsis thaliana.
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
110
structure length
110
Chain Sequence
EASPEAKAAKHLHDFFTYVAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDKFLATLMRRSSRHMNLALRILEVRSAYAKNDFEWDNMKRLAFKNVDDSNTRLMREYVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
molecule keywords AtRbcX1
publication title Insights into eukaryotic Rubisco assembly - Crystal structures of RbcX chaperones from Arabidopsis thaliana.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 45
structure length 110
sequence length 110
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-08-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02341 RcbX RbcX protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 4gr2A00
2Z44A 2PY8A 3RG6C 3HYBA 5BS2A 5BS1A 2PEQA 2PEKA 2PENA 2PEMA 4GR6A 2PEIA 4GR2A 2Z45A 2PEJA 3Q20A 2Z46A 2PEOA
chains in the Genus database with same CATH superfamily
1ZMBA 3LRYA 2PEMA 2JYGA 2KWLA 2VLNA 3G1GA 2PEJA 2WPTA 3Q20A 5HGMA 2K0YA 2MF4A 1CEIA 1L0IA 2M5RA 2DGYA 4U0FA 5I4TG 2ERHA 3CCVP 3NY7B 1EOQA 2LF4A 2LOLA 2AFDA 2KR5A 2LMLA 3CMEP 3G21A 3CC7P 4COPA 5F2KA 2GDYA 1VQMP 2GZGA 3U43A 2KGAA 3CXCO 4PXHB 3B4QA 2KOQA 2PEOA 3GJNA 2CWOA 2XV6A 1KQSO 2K93A 2NO8A 2QEXP 4GR6A 5KP7B 1YJ9P 3M1MA 2N5IA 1UNKA 1HY8A 2KG8A 2KG6A 1MZ8A 1DV5A 2LTEA 2KG9A 4WYMA 3EJDA 2JU2A 2XZ1C 1M74A 2GZJA 2L4BA 2FHSC 3CC2P 4H2WC 2MR8A 1HQBA 3GZMA 2GZFA 2M8NA 3CCUP 1YITP 4BPHA 1VQKP 2MD9A 2JB0A 4U0BA 3MGEA 2AFEA 1AUMA 1OR5A 2Z44A 5EW5E 5CZDB 5HGLA 3H47A 3CMAP 5HGOA 5JPAA 1EIAA 2XXMA 1VQLP 2DNWA 3LMOA 4H2XC 1YIJP 2PY8A 2KGDA 1VQ6P 1Z6MA 2MY5A 2KOSA 1L0HA 1GXGA 1Q81Q 3CC4P 1FR2A 1GPJA 2N6YA 3HZQA 2LKIA 1AYIA 4NEOA 2QA4P 1YJNP 4R0MA 2N6ZA 2GDXA 3EJBA 3CPWO 1QVFO 2K2QA 2GDWA 1T8KA 2BUOA 5DCKA 1IUQA 3CCJP 2FVFA 3NTEA 3P05A 2Z46A 2MVVA 1K9MQ 1D1DA 5KP6B 2JYLA 2CGQA 1BXIA 1QRJA 4XRQA 2LIWA 2KGEA 2M8LA 2JGPA 4PWVB 4BPGA 2LPKA 2PEIA 3CCLP 3EJEA 4U0AA 2XZ0D 2OTLP 1K30A 1N8RQ 2VSQA 4U0CA 5BS1A 1Q86Q 2FAEA 2X2BA 2JU1A 2KORA 4F37A 3I56P 3DPHA 1F80D 2M8PA 3DS0A 1M90Q 2EFJA 1ZNVA 1JJ2O 3G29A 2MR7A 2JO0A 3H4EA 4IPYA 4CA3A 2E1MA 4PH1A 5F2OA 1M1KQ 3CCSP 5HV8A 4QNBA 3HYBA 2FQ1A 3G0VA 3GZLA 4U0EA 3I55P 3G6EP 3DS5A 1YJWP 1VQ4P 1VKUA 2FVAA 1A43A 2JAZA 1VQ9P 2GYKA 2FQ0A 2FQ2A 2PNGA 3G26A 2MVUA 2K92A 3RG6C 2XT1A 3H0DA 4GR2A 5KP8B 2KW2A 1ACPA 3OW2O 2FADA 1VQ7P 2QNWA 2EG5A 2VLQA 1QVGO 2JBGA 2L22A 5F2NA 5EJDA 1X3OA 4PH0A 1KC8Q 1KD1Q 2ONTA 2LL8A 1A8OA 2ROQA 1YI2P 2N5HA 2AF8A 2CNRA 2KGCA 3RG2A 1E0HA 2CQ8A 1W2BO 4DG9A 1IMPA 2FVEA 2OARA 1UJZA 3DS2A 2CG5B 4H2YC 2JQ4A 1Q82Q 2N98A 2VLOA 2LIUA 1K8AQ 1M6NA 3CCQP 4XROA 1VHNA 2FACA 1DNYA 3DS3A 4XFZA 2GZIA 1VQ5P 3GKLC 4M0IA 1NQ4A 2AVAA 5HVCA 3CD6P 1BAJA 2N50A 2K0DX 2VLPA 4COCA 3G4SP 2L0QA 3CCEP 3DTJA 2OTJP 4MRTC 4QKOA 1GXHA 3G71P 3DS1A 4XFXA 1VQNP 1E6JP 3WBHA 2PEQA 2PENA 2L9FA 7CEIA 1YHQP 2EHSA 4XFYA 2P9XA 1EMVA 2K94A 3DS4A 3CCRP 1RO0A 1RNIA 2K5XA 4UHPB 1IMQA 1S72P 4IZ6A 3G28A 2KODA 2GZEA 1Q7YQ 5BS2A 1KLPA 2EHTA 1M6EX 4HKGA 1NJIQ 2KOPA 3CE7A 2Z45A 3VRLC 1VQPP 5HGNA 1VQ8P 3G1IA 1VQOP 2EIAA 3B5IA 2BHVA 2K0XA 2L6EA 4BPFA 1K73Q 4U0DA 3CCMP 1RO2A 2KOOA 2PEKA 1AF8A 3E2DA
chains in the Genus database with same CATH topology
3CCQP 4XROA 2M8NA 3CCUP 1YITP 1VQKP 3DS3A 4U0BA 3MGEA 1ZMBA 4XFZA 3I56P 3DPHA 1VQ5P 2M8PA 3LRYA 4M0IA 1AUMA 3DS0A 1M90Q 2EFJA 2Z44A 5HGLA 2PEMA 2JYGA 1JJ2O 3CD6P 3G1GA 1BAJA 3G29A 2PEJA 3Q20A 3H47A 5HGMA 2JO0A 4COCA 3CMAP 3H4EA 5HGOA 4IPYA 2E1MA 5JPAA 1EIAA 3G4SP 2XXMA 3CCEP 3DTJA 1VQLP 2OTJP 4PH1A 5F2OA 2DGYA 1M1KQ 3CCSP 4U0FA 1YIJP 4QNBA 2PY8A 1VQ6P 3HYBA 5I4TG 3G0VA 4U0EA 3I55P 3CCVP 3G71P 3DS1A 3G6EP 1EOQA 4XFXA 2LF4A 3DS5A 1YJWP 1VQ4P 1A43A 1VQNP 1E6JP 3WBHA 1Q81Q 3CMEP 3CC4P 3G21A 3CC7P 4COPA 1VQ9P 5F2KA 1VQMP 2PEQA 2PENA 3G26A 1YHQP 3HZQA 3RG6C 4XFYA 2P9XA 3CXCO 2QA4P 2XT1A 3H0DA 4GR2A 3OW2O 2PEOA 3DS4A 3CCRP 1VQ7P 1RO0A 1YJNP 2EG5A 1QVGO 1RNIA 2CWOA 3CPWO 1QVFO 2XV6A 5F2NA 2BUOA 5DCKA 4PH0A 1S72P 1KQSO 2QEXP 1KC8Q 1IUQA 4GR6A 3CCJP 1KD1Q 1YJ9P 3M1MA 3NTEA 3P05A 3G28A 2ONTA 2Z46A 2KODA 1Q7YQ 1D1DA 5BS2A 1K9MQ 2JYLA 1A8OA 1M6EX 1YI2P 1QRJA 4XRQA 1NJIQ 2M8LA 2PEIA 4WYMA 2Z45A 3CCLP 3VRLC 1VQPP 1W2BO 4U0AA 1M74A 5HGNA 1VQ8P 3G1IA 1VQOP 2OTLP 2EIAA 1K30A 1N8RQ 3B5IA 2BHVA 2OARA 2L6EA 3DS2A 1K73Q 4U0DA 3CCMP 1Q82Q 4U0CA 5BS1A 1Q86Q 1RO2A 2PEKA 3CC2P 1K8AQ 3E2DA 1M6NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z44 A;  2PY8 A;  3RG6 C;  3HYB A;  5BS2 A;  5BS1 A;  2PEQ A;  2PEK A;  2PEN A;  2PEM A;  4GR6 A;  2PEI A;  4GR2 A;  2Z45 A;  2PEJ A;  3Q20 A;  2Z46 A;  2PEO A; 
#chains in the Genus database with same CATH topology
 1ZMB A;  3LRY A;  2PEM A;  2JYG A;  2KWL A;  2VLN A;  3G1G A;  2PEJ A;  2WPT A;  3Q20 A;  5HGM A;  2K0Y A;  2MF4 A;  1CEI A;  1L0I A;  2M5R A;  2DGY A;  4U0F A;  5I4T G;  2ERH A;  3CCV P;  3NY7 B;  1EOQ A;  2LF4 A;  2LOL A;  2AFD A;  2KR5 A;  2LML A;  3CME P;  3G21 A;  3CC7 P;  4COP A;  5F2K A;  2GDY A;  1VQM P;  2GZG A;  3U43 A;  2KGA A;  3CXC O;  4PXH B;  3B4Q A;  2KOQ A;  2PEO A;  3GJN A;  2CWO A;  2XV6 A;  1KQS O;  2K93 A;  2NO8 A;  2QEX P;  4GR6 A;  5KP7 B;  1YJ9 P;  3M1M A;  2N5I A;  1UNK A;  1HY8 A;  2KG8 A;  2KG6 A;  1MZ8 A;  1DV5 A;  2LTE A;  2KG9 A;  4WYM A;  3EJD A;  2JU2 A;  2XZ1 C;  1M74 A;  2GZJ A;  2L4B A;  2FHS C;  3CC2 P;  4H2W C;  2MR8 A;  1HQB A;  3GZM A;  2GZF A;  2M8N A;  3CCU P;  1YIT P;  4BPH A;  1VQK P;  2MD9 A;  2JB0 A;  4U0B A;  3MGE A;  2AFE A;  1AUM A;  1OR5 A;  2Z44 A;  5EW5 E;  5CZD B;  5HGL A;  3H47 A;  3CMA P;  5HGO A;  5JPA A;  1EIA A;  2XXM A;  1VQL P;  2DNW A;  3LMO A;  4H2X C;  1YIJ P;  2PY8 A;  2KGD A;  1VQ6 P;  1Z6M A;  2MY5 A;  2KOS A;  1L0H A;  1GXG A;  1Q81 Q;  3CC4 P;  1FR2 A;  1GPJ A;  2N6Y A;  3HZQ A;  2LKI A;  1AYI A;  4NEO A;  2QA4 P;  1YJN P;  4R0M A;  2N6Z A;  2GDX A;  3EJB A;  3CPW O;  1QVF O;  2K2Q A;  2GDW A;  1T8K A;  2BUO A;  5DCK A;  1IUQ A;  3CCJ P;  2FVF A;  3NTE A;  3P05 A;  2Z46 A;  2MVV A;  1K9M Q;  1D1D A;  5KP6 B;  2JYL A;  2CGQ A;  1BXI A;  1QRJ A;  4XRQ A;  2LIW A;  2KGE A;  2M8L A;  2JGP A;  4PWV B;  4BPG A;  2LPK A;  2PEI A;  3CCL P;  3EJE A;  4U0A A;  2XZ0 D;  2OTL P;  1K30 A;  1N8R Q;  2VSQ A;  4U0C A;  5BS1 A;  1Q86 Q;  2FAE A;  2X2B A;  2JU1 A;  2KOR A;  4F37 A;  3I56 P;  3DPH A;  1F80 D;  2M8P A;  3DS0 A;  1M90 Q;  2EFJ A;  1ZNV A;  1JJ2 O;  3G29 A;  2MR7 A;  2JO0 A;  3H4E A;  4IPY A;  4CA3 A;  2E1M A;  4PH1 A;  5F2O A;  1M1K Q;  3CCS P;  5HV8 A;  4QNB A;  3HYB A;  2FQ1 A;  3G0V A;  3GZL A;  4U0E A;  3I55 P;  3G6E P;  3DS5 A;  1YJW P;  1VQ4 P;  1VKU A;  2FVA A;  1A43 A;  2JAZ A;  1VQ9 P;  2GYK A;  2FQ0 A;  2FQ2 A;  2PNG A;  3G26 A;  2MVU A;  2K92 A;  3RG6 C;  2XT1 A;  3H0D A;  4GR2 A;  5KP8 B;  2KW2 A;  1ACP A;  3OW2 O;  2FAD A;  1VQ7 P;  2QNW A;  2EG5 A;  2VLQ A;  1QVG O;  2JBG A;  2L22 A;  5F2N A;  5EJD A;  1X3O A;  4PH0 A;  1KC8 Q;  1KD1 Q;  2ONT A;  2LL8 A;  1A8O A;  2ROQ A;  1YI2 P;  2N5H A;  2AF8 A;  2CNR A;  2KGC A;  3RG2 A;  1E0H A;  2CQ8 A;  1W2B O;  4DG9 A;  1IMP A;  2FVE A;  2OAR A;  1UJZ A;  3DS2 A;  2CG5 B;  4H2Y C;  2JQ4 A;  1Q82 Q;  2N98 A;  2VLO A;  2LIU A;  1K8A Q;  1M6N A;  3CCQ P;  4XRO A;  1VHN A;  2FAC A;  1DNY A;  3DS3 A;  4XFZ A;  2GZI A;  1VQ5 P;  3GKL C;  4M0I A;  1NQ4 A;  2AVA A;  5HVC A;  3CD6 P;  1BAJ A;  2N50 A;  2K0D X;  2VLP A;  4COC A;  3G4S P;  2L0Q A;  3CCE P;  3DTJ A;  2OTJ P;  4MRT C;  4QKO A;  1GXH A;  3G71 P;  3DS1 A;  4XFX A;  1VQN P;  1E6J P;  3WBH A;  2PEQ A;  2PEN A;  2L9F A;  7CEI A;  1YHQ P;  2EHS A;  4XFY A;  2P9X A;  1EMV A;  2K94 A;  3DS4 A;  3CCR P;  1RO0 A;  1RNI A;  2K5X A;  4UHP B;  1IMQ A;  1S72 P;  4IZ6 A;  3G28 A;  2KOD A;  2GZE A;  1Q7Y Q;  5BS2 A;  1KLP A;  2EHT A;  1M6E X;  4HKG A;  1NJI Q;  2KOP A;  3CE7 A;  2Z45 A;  3VRL C;  1VQP P;  5HGN A;  1VQ8 P;  3G1I A;  1VQO P;  2EIA A;  3B5I A;  2BHV A;  2K0X A;  2L6E A;  4BPF A;  1K73 Q;  4U0D A;  3CCM P;  1RO2 A;  2KOO A;  2PEK A;  1AF8 A;  3E2D A; 
#chains in the Genus database with same CATH homology
 3CCQ P;  4XRO A;  2M8N A;  3CCU P;  1YIT P;  1VQK P;  3DS3 A;  4U0B A;  3MGE A;  1ZMB A;  4XFZ A;  3I56 P;  3DPH A;  1VQ5 P;  2M8P A;  3LRY A;  4M0I A;  1AUM A;  3DS0 A;  1M90 Q;  2EFJ A;  2Z44 A;  5HGL A;  2PEM A;  2JYG A;  1JJ2 O;  3CD6 P;  3G1G A;  1BAJ A;  3G29 A;  2PEJ A;  3Q20 A;  3H47 A;  5HGM A;  2JO0 A;  4COC A;  3CMA P;  3H4E A;  5HGO A;  4IPY A;  2E1M A;  5JPA A;  1EIA A;  3G4S P;  2XXM A;  3CCE P;  3DTJ A;  1VQL P;  2OTJ P;  4PH1 A;  5F2O A;  2DGY A;  1M1K Q;  3CCS P;  4U0F A;  1YIJ P;  4QNB A;  2PY8 A;  1VQ6 P;  3HYB A;  5I4T G;  3G0V A;  4U0E A;  3I55 P;  3CCV P;  3G71 P;  3DS1 A;  3G6E P;  1EOQ A;  4XFX A;  2LF4 A;  3DS5 A;  1YJW P;  1VQ4 P;  1A43 A;  1VQN P;  1E6J P;  3WBH A;  1Q81 Q;  3CME P;  3CC4 P;  3G21 A;  3CC7 P;  4COP A;  1VQ9 P;  5F2K A;  1VQM P;  2PEQ A;  2PEN A;  3G26 A;  1YHQ P;  3HZQ A;  3RG6 C;  4XFY A;  2P9X A;  3CXC O;  2QA4 P;  2XT1 A;  3H0D A;  4GR2 A;  3OW2 O;  2PEO A;  3DS4 A;  3CCR P;  1VQ7 P;  1RO0 A;  1YJN P;  2EG5 A;  1QVG O;  1RNI A;  2CWO A;  3CPW O;  1QVF O;  2XV6 A;  5F2N A;  2BUO A;  5DCK A;  4PH0 A;  1S72 P;  1KQS O;  2QEX P;  1KC8 Q;  1IUQ A;  4GR6 A;  3CCJ P;  1KD1 Q;  1YJ9 P;  3M1M A;  3NTE A;  3P05 A;  3G28 A;  2ONT A;  2Z46 A;  2KOD A;  1Q7Y Q;  1D1D A;  5BS2 A;  1K9M Q;  2JYL A;  1A8O A;  1M6E X;  1YI2 P;  1QRJ A;  4XRQ A;  1NJI Q;  2M8L A;  2PEI A;  4WYM A;  2Z45 A;  3CCL P;  3VRL C;  1VQP P;  1W2B O;  4U0A A;  1M74 A;  5HGN A;  1VQ8 P;  3G1I A;  1VQO P;  2OTL P;  2EIA A;  1K30 A;  1N8R Q;  3B5I A;  2BHV A;  2OAR A;  2L6E A;  3DS2 A;  1K73 Q;  4U0D A;  3CCM P;  1Q82 Q;  4U0C A;  5BS1 A;  1Q86 Q;  1RO2 A;  2PEK A;  3CC2 P;  1K8A Q;  3E2D A;  1M6N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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