4GR2A

Structure of atrbcx1 from arabidopsis thaliana.
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
110
structure length
110
Chain Sequence
EASPEAKAAKHLHDFFTYVAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDKFLATLMRRSSRHMNLALRILEVRSAYAKNDFEWDNMKRLAFKNVDDSNTRLMREYVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
source organism Arabidopsis thaliana
publication title Insights into eukaryotic Rubisco assembly - Crystal structures of RbcX chaperones from Arabidopsis thaliana.
pubmed doi rcsb
molecule keywords AtRbcX1
total genus 45
structure length 110
sequence length 110
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-08-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02341 RcbX RbcX protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 4gr2A00
5BS2A 3HYBA 2PEJA 2PEKA 2PEIA 2PEOA 5BS1A 4GR6A 3RG6C 2Z45A 2PY8A 2PENA 2Z44A 4GR2A 2PEQA 2Z46A 2PEMA 3Q20A
chains in the Genus database with same CATH superfamily
1YJWP 1Z6MA 4PH0A 4COPA 2N6YA 3CCRP 3EJDA 2BUOA 2PEIA 4NEOA 2JBGA 2QEXP 3DS3A 2L4BA 2KW2A 3CMAP 1IMPA 1HQBA 5EW5E 2EHSA 3CCSP 1VKUA 5HGMA 1E6JP 1VQPP 2QA4P 3U43A 4QKOA 1EOQA 2XV6A 3LMOA 2LIWA 2M8LA 2KODA 1VQ4P 3CCVP 3LRYA 2ONTA 1K30A 1Q7YQ 1K73Q 4WYMA 2K0YA 2VLPA 2FHSC 4M0IA 2L6EA 2GZJA 3B5IA 5CZDB 2LKIA 3DS0A 1KLPA 2MY5A 5F2NA 2FVAA 3GZMA 2KOQA 2KWLA 2JYGA 1EMVA 3VRLC 5EJDA 3G29A 2PY8A 3CC2P 3CD6P 2K92A 2XZ0D 2FVFA 2DNWA 4GR6A 3G28A 3H0DA 3GJNA 2N5IA 5JPAA 1IUQA 1CEIA 2GDYA 3WBHA 3G71P 1YHQP 2DGYA 2N50A 2KG8A 5BS1A 2BHVA 2PENA 3DS1A 2OTLP 1N8RQ 1YJ9P 2JU1A 3CCQP 2K94A 3MGEA 2KG6A 1Q82Q 2WPTA 1X3OA 2OARA 2KGAA 1YIJP 3Q20A 2GZEA 3RG2A 2FQ1A 2OTJP 1M90Q 3H4EA 1VQ8P 4DG9A 3CC4P 2K5XA 2XT1A 3CMEP 2PEJA 3EJEA 4UHPB 4XFXA 2JYLA 2LPKA 2Z44A 3EJBA 1Q81Q 2EFJA 1EIAA 2PEMA 3G1IA 1VQLP 2XXMA 1FR2A 4COCA 2AF8A 2CWOA 2KG9A 2GZFA 1QRJA 3I55P 2PEOA 2CGQA 2XZ1C 2L9FA 1GXHA 2CG5B 3CCJP 1QVGO 1KD1Q 2JQ4A 5HGNA 4PWVB 3G1GA 2AFEA 1YJNP 1KC8Q 1UNKA 5HVCA 1RNIA 2FACA 4U0BA 1Q86Q 7CEIA 2P9XA 2KGEA 1GXGA 1W2BO 3DPHA 2MR7A 1NQ4A 1KQSO 2GZGA 2FVEA 5KP8B 2KGCA 2FAEA 2N6ZA 2JO0A 1L0IA 3HZQA 2MD9A 2N5HA 3NTEA 4BPGA 3GZLA 1JJ2O 2ERHA 1QVFO 4U0EA 3CXCO 5DCKA 1DV5A 1IMQA 3NY7B 1UJZA 2QNWA 2AFDA 2AVAA 1VQ6P 5I4TG 2KGDA 1YITP 2LL8A 2LMLA 2K0DX 3G21A 2VLQA 1DNYA 4R0MA 5HGLA 2MR8A 1BXIA 4XFYA 1VQOP 1S72P 2GDWA 1A8OA 3G4SP 2LTEA 2EG5A 2KOOA 2JGPA 4BPHA 4U0DA 1VQKP 4BPFA 2MF4A 2LOLA 4XFZA 4U0AA 2EIAA 1GPJA 1K9MQ 4QNBA 2FQ0A 2MVVA 3G26A 3B4QA 2CNRA 2L0QA 4H2XC 3H47A 2JU2A 2ROQA 2PEQA 4PXHB 2VLOA 2KR5A 2PEKA 1F80D 4U0CA 1AYIA 2Z46A 1M1KQ 2Z45A 3CC7P 2X2BA 2JAZA 2GDXA 1A43A 4IPYA 4PH1A 4U0FA 1OR5A 1AUMA 4IZ6A 2N98A 3CCUP 2PNGA 3CE7A 5HV8A 2MVUA 3CPWO 5HGOA 3G6EP 3M1MA 1RO2A 3GKLC 3G0VA 5F2KA 1YI2P 3HYBA 2VSQA 1T8KA 2NO8A 2K2QA 3RG6C 1VQNP 2JB0A 3E2DA 5BS2A 3I56P 4H2WC 1RO0A 1D1DA 2CQ8A 2KOSA 1ZNVA 1VHNA 2E1MA 4HKGA 4MRTC 1VQ9P 1M74A 2EHTA 5F2OA 3CCEP 2M8NA 5KP7B 3CCLP 4F37A 1NJIQ 1MZ8A 4CA3A 1VQMP 2M8PA 1VQ5P 3DS2A 2KOPA 3DTJA 1K8AQ 2K0XA 1E0HA 4XRQA 2FADA 1HY8A 4GR2A 3P05A 3CCMP 1M6EX 1VQ7P 2L22A 1ZMBA 1BAJA 3DS5A 2LF4A 4XROA 2LIUA 2FQ2A 2VLNA 3DS4A 1M6NA 1AF8A 2GZIA 2KORA 2K93A 1L0HA 5KP6B 2GYKA 1ACPA 2M5RA 3OW2O 4H2YC
chains in the Genus database with same CATH topology
3CXCO 3G0VA 1YJWP 5F2KA 5BS1A 1YI2P 2BHVA 5DCKA 2PENA 3DS1A 2OTLP 4PH0A 4COPA 3CCRP 1N8RQ 3HYBA 2BUOA 1YJ9P 2PEIA 2QEXP 5I4TG 1VQ6P 3CCQP 3DS3A 1YITP 3MGEA 3RG6C 1Q82Q 3CMAP 2OARA 3G21A 1VQNP 3CCSP 5HGMA 5HGLA 1E6JP 3E2DA 1YIJP 3Q20A 5BS2A 3I56P 1RO0A 1D1DA 4XFYA 1VQPP 2QA4P 2OTJP 1VQOP 1S72P 1M90Q 3H4EA 1A8OA 1VQ8P 1EOQA 3G4SP 3CC4P 2XV6A 2EG5A 2M8LA 2KODA 1VQ4P 2XT1A 3CCVP 2E1MA 2PEJA 3CMEP 4U0DA 4XFXA 3LRYA 2JYLA 2ONTA 1VQKP 1K30A 2Z44A 1Q7YQ 4XFZA 1VQ9P 4U0AA 2EIAA 1M74A 1Q81Q 1K9MQ 2EFJA 4QNBA 1EIAA 5F2OA 1K73Q 3CCEP 4WYMA 2PEMA 2M8NA 3G1IA 3G26A 2XXMA 1VQLP 4COCA 3CCLP 4M0IA 2CWOA 1NJIQ 1QRJA 2L6EA 3I55P 2PEOA 1VQMP 3B5IA 2M8PA 3CCJP 1QVGO 3H47A 1VQ5P 3DS2A 1KD1Q 3DS0A 5HGNA 3DTJA 3G1GA 1K8AQ 2PEQA 1YJNP 1KC8Q 4XRQA 2PEKA 5F2NA 4U0CA 1RNIA 4GR2A 3P05A 2Z46A 3CCMP 1M6EX 2Z45A 4U0BA 1Q86Q 1M1KQ 1VQ7P 2P9XA 3CC7P 1ZMBA 1BAJA 3DS5A 2JYGA 2LF4A 1A43A 4IPYA 4XROA 1W2BO 4PH1A 4U0FA 3DPHA 3VRLC 1AUMA 1KQSO 3DS4A 1M6NA 3G29A 2PY8A 3CC2P 3CD6P 3CCUP 4GR6A 3G28A 3H0DA 5JPAA 1IUQA 2JO0A 3HZQA 3CPWO 3NTEA 3WBHA 3OW2O 3G71P 1JJ2O 1QVFO 5HGOA 3G6EP 3M1MA 1RO2A 1YHQP 2DGYA 4U0EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BS2 A;  3HYB A;  2PEJ A;  2PEK A;  2PEI A;  2PEO A;  5BS1 A;  4GR6 A;  3RG6 C;  2Z45 A;  2PY8 A;  2PEN A;  2Z44 A;  4GR2 A;  2PEQ A;  2Z46 A;  2PEM A;  3Q20 A; 
#chains in the Genus database with same CATH topology
 1YJW P;  1Z6M A;  4PH0 A;  4COP A;  2N6Y A;  3CCR P;  3EJD A;  2BUO A;  2PEI A;  4NEO A;  2JBG A;  2QEX P;  3DS3 A;  2L4B A;  2KW2 A;  3CMA P;  1IMP A;  1HQB A;  5EW5 E;  2EHS A;  3CCS P;  1VKU A;  5HGM A;  1E6J P;  1VQP P;  2QA4 P;  3U43 A;  4QKO A;  1EOQ A;  2XV6 A;  3LMO A;  2LIW A;  2M8L A;  2KOD A;  1VQ4 P;  3CCV P;  3LRY A;  2ONT A;  1K30 A;  1Q7Y Q;  1K73 Q;  4WYM A;  2K0Y A;  2VLP A;  2FHS C;  4M0I A;  2L6E A;  2GZJ A;  3B5I A;  5CZD B;  2LKI A;  3DS0 A;  1KLP A;  2MY5 A;  5F2N A;  2FVA A;  3GZM A;  2KOQ A;  2KWL A;  2JYG A;  1EMV A;  3VRL C;  5EJD A;  3G29 A;  2PY8 A;  3CC2 P;  3CD6 P;  2K92 A;  2XZ0 D;  2FVF A;  2DNW A;  4GR6 A;  3G28 A;  3H0D A;  3GJN A;  2N5I A;  5JPA A;  1IUQ A;  1CEI A;  2GDY A;  3WBH A;  3G71 P;  1YHQ P;  2DGY A;  2N50 A;  2KG8 A;  5BS1 A;  2BHV A;  2PEN A;  3DS1 A;  2OTL P;  1N8R Q;  1YJ9 P;  2JU1 A;  3CCQ P;  2K94 A;  3MGE A;  2KG6 A;  1Q82 Q;  2WPT A;  1X3O A;  2OAR A;  2KGA A;  1YIJ P;  3Q20 A;  2GZE A;  3RG2 A;  2FQ1 A;  2OTJ P;  1M90 Q;  3H4E A;  1VQ8 P;  4DG9 A;  3CC4 P;  2K5X A;  2XT1 A;  3CME P;  2PEJ A;  3EJE A;  4UHP B;  4XFX A;  2JYL A;  2LPK A;  2Z44 A;  3EJB A;  1Q81 Q;  2EFJ A;  1EIA A;  2PEM A;  3G1I A;  1VQL P;  2XXM A;  1FR2 A;  4COC A;  2AF8 A;  2CWO A;  2KG9 A;  2GZF A;  1QRJ A;  3I55 P;  2PEO A;  2CGQ A;  2XZ1 C;  2L9F A;  1GXH A;  2CG5 B;  3CCJ P;  1QVG O;  1KD1 Q;  2JQ4 A;  5HGN A;  4PWV B;  3G1G A;  2AFE A;  1YJN P;  1KC8 Q;  1UNK A;  5HVC A;  1RNI A;  2FAC A;  4U0B A;  1Q86 Q;  7CEI A;  2P9X A;  2KGE A;  1GXG A;  1W2B O;  3DPH A;  2MR7 A;  1NQ4 A;  1KQS O;  2GZG A;  2FVE A;  5KP8 B;  2KGC A;  2FAE A;  2N6Z A;  2JO0 A;  1L0I A;  3HZQ A;  2MD9 A;  2N5H A;  3NTE A;  4BPG A;  3GZL A;  1JJ2 O;  2ERH A;  1QVF O;  4U0E A;  3CXC O;  5DCK A;  1DV5 A;  1IMQ A;  3NY7 B;  1UJZ A;  2QNW A;  2AFD A;  2AVA A;  1VQ6 P;  5I4T G;  2KGD A;  1YIT P;  2LL8 A;  2LML A;  2K0D X;  3G21 A;  2VLQ A;  1DNY A;  4R0M A;  5HGL A;  2MR8 A;  1BXI A;  4XFY A;  1VQO P;  1S72 P;  2GDW A;  1A8O A;  3G4S P;  2LTE A;  2EG5 A;  2KOO A;  2JGP A;  4BPH A;  4U0D A;  1VQK P;  4BPF A;  2MF4 A;  2LOL A;  4XFZ A;  4U0A A;  2EIA A;  1GPJ A;  1K9M Q;  4QNB A;  2FQ0 A;  2MVV A;  3G26 A;  3B4Q A;  2CNR A;  2L0Q A;  4H2X C;  3H47 A;  2JU2 A;  2ROQ A;  2PEQ A;  4PXH B;  2VLO A;  2KR5 A;  2PEK A;  1F80 D;  4U0C A;  1AYI A;  2Z46 A;  1M1K Q;  2Z45 A;  3CC7 P;  2X2B A;  2JAZ A;  2GDX A;  1A43 A;  4IPY A;  4PH1 A;  4U0F A;  1OR5 A;  1AUM A;  4IZ6 A;  2N98 A;  3CCU P;  2PNG A;  3CE7 A;  5HV8 A;  2MVU A;  3CPW O;  5HGO A;  3G6E P;  3M1M A;  1RO2 A;  3GKL C;  3G0V A;  5F2K A;  1YI2 P;  3HYB A;  2VSQ A;  1T8K A;  2NO8 A;  2K2Q A;  3RG6 C;  1VQN P;  2JB0 A;  3E2D A;  5BS2 A;  3I56 P;  4H2W C;  1RO0 A;  1D1D A;  2CQ8 A;  2KOS A;  1ZNV A;  1VHN A;  2E1M A;  4HKG A;  4MRT C;  1VQ9 P;  1M74 A;  2EHT A;  5F2O A;  3CCE P;  2M8N A;  5KP7 B;  3CCL P;  4F37 A;  1NJI Q;  1MZ8 A;  4CA3 A;  1VQM P;  2M8P A;  1VQ5 P;  3DS2 A;  2KOP A;  3DTJ A;  1K8A Q;  2K0X A;  1E0H A;  4XRQ A;  2FAD A;  1HY8 A;  4GR2 A;  3P05 A;  3CCM P;  1M6E X;  1VQ7 P;  2L22 A;  1ZMB A;  1BAJ A;  3DS5 A;  2LF4 A;  4XRO A;  2LIU A;  2FQ2 A;  2VLN A;  3DS4 A;  1M6N A;  1AF8 A;  2GZI A;  2KOR A;  2K93 A;  1L0H A;  5KP6 B;  2GYK A;  1ACP A;  2M5R A;  3OW2 O;  4H2Y C; 
#chains in the Genus database with same CATH homology
 3CXC O;  3G0V A;  1YJW P;  5F2K A;  5BS1 A;  1YI2 P;  2BHV A;  5DCK A;  2PEN A;  3DS1 A;  2OTL P;  4PH0 A;  4COP A;  3CCR P;  1N8R Q;  3HYB A;  2BUO A;  1YJ9 P;  2PEI A;  2QEX P;  5I4T G;  1VQ6 P;  3CCQ P;  3DS3 A;  1YIT P;  3MGE A;  3RG6 C;  1Q82 Q;  3CMA P;  2OAR A;  3G21 A;  1VQN P;  3CCS P;  5HGM A;  5HGL A;  1E6J P;  3E2D A;  1YIJ P;  3Q20 A;  5BS2 A;  3I56 P;  1RO0 A;  1D1D A;  4XFY A;  1VQP P;  2QA4 P;  2OTJ P;  1VQO P;  1S72 P;  1M90 Q;  3H4E A;  1A8O A;  1VQ8 P;  1EOQ A;  3G4S P;  3CC4 P;  2XV6 A;  2EG5 A;  2M8L A;  2KOD A;  1VQ4 P;  2XT1 A;  3CCV P;  2E1M A;  2PEJ A;  3CME P;  4U0D A;  4XFX A;  3LRY A;  2JYL A;  2ONT A;  1VQK P;  1K30 A;  2Z44 A;  1Q7Y Q;  4XFZ A;  1VQ9 P;  4U0A A;  2EIA A;  1M74 A;  1Q81 Q;  1K9M Q;  2EFJ A;  4QNB A;  1EIA A;  5F2O A;  1K73 Q;  3CCE P;  4WYM A;  2PEM A;  2M8N A;  3G1I A;  3G26 A;  2XXM A;  1VQL P;  4COC A;  3CCL P;  4M0I A;  2CWO A;  1NJI Q;  1QRJ A;  2L6E A;  3I55 P;  2PEO A;  1VQM P;  3B5I A;  2M8P A;  3CCJ P;  1QVG O;  3H47 A;  1VQ5 P;  3DS2 A;  1KD1 Q;  3DS0 A;  5HGN A;  3DTJ A;  3G1G A;  1K8A Q;  2PEQ A;  1YJN P;  1KC8 Q;  4XRQ A;  2PEK A;  5F2N A;  4U0C A;  1RNI A;  4GR2 A;  3P05 A;  2Z46 A;  3CCM P;  1M6E X;  2Z45 A;  4U0B A;  1Q86 Q;  1M1K Q;  1VQ7 P;  2P9X A;  3CC7 P;  1ZMB A;  1BAJ A;  3DS5 A;  2JYG A;  2LF4 A;  1A43 A;  4IPY A;  4XRO A;  1W2B O;  4PH1 A;  4U0F A;  3DPH A;  3VRL C;  1AUM A;  1KQS O;  3DS4 A;  1M6N A;  3G29 A;  2PY8 A;  3CC2 P;  3CD6 P;  3CCU P;  4GR6 A;  3G28 A;  3H0D A;  5JPA A;  1IUQ A;  2JO0 A;  3HZQ A;  3CPW O;  3NTE A;  3WBH A;  3OW2 O;  3G71 P;  1JJ2 O;  1QVF O;  5HGO A;  3G6E P;  3M1M A;  1RO2 A;  1YHQ P;  2DGY A;  4U0E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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