3G1GA

Crystal structure of the c-terminal domain from the rous sarcoma virus capsid protein: high ph
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
77
structure length
77
Chain Sequence
GPWADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Rous sarcoma virus
publication title Proton-linked dimerization of a retroviral capsid protein initiates capsid assembly
pubmed doi rcsb
molecule keywords Gag polyprotein
total genus 24
structure length 77
sequence length 77
chains with identical sequence B
ec nomenclature ec 3.4.23.-:
pdb deposition date 2009-01-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3g1gA00
1EIAA 3DS5A 4XFYA 3H4EA 2EIAA 3NTEA 1AUMA 3G1IA 3G26A 1D1DA 1EOQA 4XFXA 3G1GA 4PH1A 3G28A 4U0EA 2KODA 2LF4A 5HGNA 2JO0A 2ONTA 4COPA 3DS3A 3H47A 2BUOA 4U0AA 4XRQA 5JPAA 2XT1A 2L6EA 4M0IA 3VRLC 4XFZA 2M8PA 3DS0A 2M8NA 2JYGA 3DS4A 4U0DA 1QRJA 2JYLA 3DS1A 1A43A 4U0FA 4U0CA 3DS2A 3DPHA 3G29A 1E6JP 2M8LA 4QNBA 3P05A 5HGLA 1BAJA 3DTJA 4WYMA 5HGOA 2XV6A 4COCA 5DCKA 4IPYA 3G0VA 3LRYA 2XXMA 4U0BA 3G21A 4XROA 3MGEA 1A8OA 4PH0A 5I4TG 5HGMA
chains in the Genus database with same CATH superfamily
4DG9A 2MY5A 4XFXA 2KODA 1ZMBA 3EJBA 1VQ6P 2JAZA 2Z45A 3CMEP 2EG5A 3CCLP 5HVCA 3CPWO 1EMVA 1UJZA 1RO2A 1IUQA 1Q86Q 5BS2A 1E0HA 2DGYA 1W2BO 3E2DA 1D1DA 1Q82Q 2MF4A 3WBHA 4H2XC 2E1MA 2QA4P 2FACA 1YJNP 1VQPP 5KP7B 1VQ8P 4R0MA 1YJ9P 4MRTC 2K93A 3CCEP 1VQMP 2PENA 4PXHB 5I4TG 1EIAA 4BPGA 1IMQA 2CWOA 2PNGA 2MR8A 4BPHA 2JU2A 2GDXA 2KOPA 2KOSA 1RO0A 3CE7A 1HQBA 1JJ2O 5F2NA 5EW5E 2Z46A 2VSQA 3DTJA 2GZFA 4IPYA 1GXHA 3G4SP 5KP8B 1M90Q 4U0BA 1OR5A 1KD1Q 3G1GA 4U0EA 5F2KA 1VQ4P 2AFEA 3H47A 2PEIA 2K2QA 4XRQA 3CXCO 1M6EX 2AFDA 1Z6MA 4NEOA 2LIWA 2KG9A 1N8RQ 1VQ5P 2PEOA 2GZIA 4U0AA 3VRLC 4BPFA 2LL8A 2M8NA 1M74A 2FAEA 2JU1A 2K0DX 2PEKA 5HGLA 2LMLA 2FQ1A 2FVFA 2LTEA 2MD9A 1AUMA 3H0DA 4GR2A 2KGCA 2EHSA 2VLOA 2ONTA 2X2BA 4COPA 1YIJP 2BUOA 4QKOA 3DS0A 2L22A 3RG2A 3EJDA 2MVUA 1FR2A 5KP6B 1VHNA 2XV6A 3H4EA 2EIAA 2N5IA 1DV5A 1GXGA 2M8PA 2DNWA 3CCVP 3DS4A 1VQ7P 3DS1A 1VQOP 1E6JP 1S72P 3P05A 2EHTA 1L0HA 1DNYA 3G0VA 1VQKP 3G71P 2VLPA 2KOQA 1KC8Q 2KGEA 1M1KQ 4PWVB 4HKGA 2XT1A 4M0IA 1VKUA 2FQ2A 1CEIA 2KG6A 3LMOA 2JBGA 2BHVA 3Q20A 2PEJA 3EJEA 3CCJP 5HGMA 1GPJA 2GDYA 2KGAA 2XZ1C 2GZEA 2LF4A 5HGNA 1K30A 3CC4P 5JPAA 1Q81Q 4XFZA 2K94A 1QRJA 1AF8A 1NQ4A 1AYIA 1QVFO 2XZ0D 3NY7B 4XROA 1YI2P 2ROQA 3CC2P 4PH0A 4F37A 3G26A 1BXIA 2FHSC 1K9MQ 2KG8A 1YJWP 2JQ4A 2L0QA 5F2OA 3DS3A 2FVAA 2LPKA 4U0DA 2N98A 3DS2A 2L4BA 2N50A 4H2YC 2GZJA 1QVGO 1M6NA 5BS1A 1F80D 4COCA 3GJNA 1YITP 2QNWA 3CCSP 2KWLA 2K5XA 3M1MA 2EFJA 2LOLA 3I56P 2ERHA 4U0FA 1VQ9P 1NJIQ 2KR5A 2K92A 2KGDA 2WPTA 1T8KA 3DS5A 4XFYA 5HV8A 2N6YA 4CA3A 1EOQA 5CZDB 2CGQA 2OTJP 2JO0A 1VQNP 1ZNVA 1K73Q 2VLQA 2VLNA 4H2WC 2KORA 2AF8A 3RG6C 2OTLP 4UHPB 2QEXP 7CEIA 2M8LA 1UNKA 2MVVA 1X3OA 2CG5B 3HYBA 2XXMA 3MGEA 3NTEA 3CC7P 3CMAP 2AVAA 3G28A 2KW2A 3GZLA 2KOOA 1ACPA 3U43A 3CCQP 2JYGA 4GR6A 2PY8A 2MR7A 2L9FA 2CQ8A 3B4QA 4WYMA 3G21A 2LIUA 2CNRA 3HZQA 3OW2O 2OARA 3G1IA 2JB0A 3CCRP 2P9XA 2GYKA 2PEMA 2M5RA 3B5IA 2JYLA 1KLPA 2K0YA 2PEQA 5EJDA 3G6EP 2LKIA 2JGPA 2K0XA 1YHQP 3CCUP 3I55P 1RNIA 1HY8A 3CCMP 2FADA 2L6EA 3GKLC 3GZMA 3CD6P 4U0CA 1VQLP 2NO8A 3DPHA 3G29A 4QNBA 5HGOA 1KQSO 3LRYA 2Z44A 1A8OA 2N5HA 2FQ0A 2GDWA 4PH1A 1K8AQ 1A43A 2N6ZA 1L0IA 1Q7YQ 1BAJA 4IZ6A 2GZGA 5DCKA 1IMPA 1MZ8A 2FVEA
chains in the Genus database with same CATH topology
1N8RQ 1VQ5P 3NTEA 3CC7P 3CMAP 2PEOA 4XFXA 3G28A 2KODA 2LF4A 5HGNA 1K30A 3CC4P 4U0AA 1ZMBA 5JPAA 3VRLC 3CCQP 1Q81Q 4XFZA 1VQ6P 2JYGA 2M8NA 4GR6A 2PY8A 1QRJA 1M74A 2Z45A 3CMEP 2EG5A 3CCLP 3CPWO 2PEKA 1RO2A 5HGLA 1IUQA 1Q86Q 5BS2A 4WYMA 1QVFO 2DGYA 4XROA 1YI2P 3G21A 3CC2P 3HZQA 4PH0A 3OW2O 1W2BO 2OARA 3E2DA 1D1DA 1AUMA 3G1IA 3G26A 3H0DA 1Q82Q 3WBHA 3CCRP 4GR2A 1K9MQ 1YJWP 2P9XA 2ONTA 2E1MA 5F2OA 3DS3A 4COPA 1YIJP 2PEMA 2BUOA 2QA4P 3DS0A 3B5IA 1YJNP 1VQPP 4U0DA 2JYLA 3DS2A 1VQ8P 1YJ9P 2PEQA 1QVGO 1M6NA 3G6EP 5BS1A 3CCEP 2XV6A 1YHQP 4COCA 3CCUP 1VQMP 3I55P 2PENA 1RNIA 5I4TG 1EIAA 3H4EA 2EIAA 1YITP 3CCMP 2CWOA 3CCSP 3M1MA 2L6EA 2EFJA 1RO0A 2M8PA 3CCVP 3DS4A 1VQ7P 3I56P 1JJ2O 3CD6P 3DS1A 4U0FA 4U0CA 1VQ9P 1VQOP 1VQLP 5F2NA 3DPHA 3G29A 1E6JP 1NJIQ 1S72P 4QNBA 3P05A 2Z46A 3DTJA 5HGOA 4IPYA 3G0VA 3LRYA 1KQSO 3G4SP 1VQKP 2Z44A 1M90Q 1A8OA 4U0BA 3G71P 3DS5A 4XFYA 1KC8Q 1KD1Q 1EOQA 1M1KQ 3G1GA 4PH1A 4U0EA 2OTJP 5F2KA 2JO0A 1VQ4P 1VQNP 1K73Q 3H47A 2PEIA 4XRQA 2XT1A 4M0IA 3CXCO 1M6EX 1K8AQ 3RG6C 2OTLP 2QEXP 1A43A 2BHVA 2M8LA 3Q20A 1Q7YQ 1BAJA 2PEJA 5DCKA 3HYBA 2XXMA 3CCJP 3MGEA 5HGMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EIA A;  3DS5 A;  4XFY A;  3H4E A;  2EIA A;  3NTE A;  1AUM A;  3G1I A;  3G26 A;  1D1D A;  1EOQ A;  4XFX A;  3G1G A;  4PH1 A;  3G28 A;  4U0E A;  2KOD A;  2LF4 A;  5HGN A;  2JO0 A;  2ONT A;  4COP A;  3DS3 A;  3H47 A;  2BUO A;  4U0A A;  4XRQ A;  5JPA A;  2XT1 A;  2L6E A;  4M0I A;  3VRL C;  4XFZ A;  2M8P A;  3DS0 A;  2M8N A;  2JYG A;  3DS4 A;  4U0D A;  1QRJ A;  2JYL A;  3DS1 A;  1A43 A;  4U0F A;  4U0C A;  3DS2 A;  3DPH A;  3G29 A;  1E6J P;  2M8L A;  4QNB A;  3P05 A;  5HGL A;  1BAJ A;  3DTJ A;  4WYM A;  5HGO A;  2XV6 A;  4COC A;  5DCK A;  4IPY A;  3G0V A;  3LRY A;  2XXM A;  4U0B A;  3G21 A;  4XRO A;  3MGE A;  1A8O A;  4PH0 A;  5I4T G;  5HGM A; 
#chains in the Genus database with same CATH topology
 4DG9 A;  2MY5 A;  4XFX A;  2KOD A;  1ZMB A;  3EJB A;  1VQ6 P;  2JAZ A;  2Z45 A;  3CME P;  2EG5 A;  3CCL P;  5HVC A;  3CPW O;  1EMV A;  1UJZ A;  1RO2 A;  1IUQ A;  1Q86 Q;  5BS2 A;  1E0H A;  2DGY A;  1W2B O;  3E2D A;  1D1D A;  1Q82 Q;  2MF4 A;  3WBH A;  4H2X C;  2E1M A;  2QA4 P;  2FAC A;  1YJN P;  1VQP P;  5KP7 B;  1VQ8 P;  4R0M A;  1YJ9 P;  4MRT C;  2K93 A;  3CCE P;  1VQM P;  2PEN A;  4PXH B;  5I4T G;  1EIA A;  4BPG A;  1IMQ A;  2CWO A;  2PNG A;  2MR8 A;  4BPH A;  2JU2 A;  2GDX A;  2KOP A;  2KOS A;  1RO0 A;  3CE7 A;  1HQB A;  1JJ2 O;  5F2N A;  5EW5 E;  2Z46 A;  2VSQ A;  3DTJ A;  2GZF A;  4IPY A;  1GXH A;  3G4S P;  5KP8 B;  1M90 Q;  4U0B A;  1OR5 A;  1KD1 Q;  3G1G A;  4U0E A;  5F2K A;  1VQ4 P;  2AFE A;  3H47 A;  2PEI A;  2K2Q A;  4XRQ A;  3CXC O;  1M6E X;  2AFD A;  1Z6M A;  4NEO A;  2LIW A;  2KG9 A;  1N8R Q;  1VQ5 P;  2PEO A;  2GZI A;  4U0A A;  3VRL C;  4BPF A;  2LL8 A;  2M8N A;  1M74 A;  2FAE A;  2JU1 A;  2K0D X;  2PEK A;  5HGL A;  2LML A;  2FQ1 A;  2FVF A;  2LTE A;  2MD9 A;  1AUM A;  3H0D A;  4GR2 A;  2KGC A;  2EHS A;  2VLO A;  2ONT A;  2X2B A;  4COP A;  1YIJ P;  2BUO A;  4QKO A;  3DS0 A;  2L22 A;  3RG2 A;  3EJD A;  2MVU A;  1FR2 A;  5KP6 B;  1VHN A;  2XV6 A;  3H4E A;  2EIA A;  2N5I A;  1DV5 A;  1GXG A;  2M8P A;  2DNW A;  3CCV P;  3DS4 A;  1VQ7 P;  3DS1 A;  1VQO P;  1E6J P;  1S72 P;  3P05 A;  2EHT A;  1L0H A;  1DNY A;  3G0V A;  1VQK P;  3G71 P;  2VLP A;  2KOQ A;  1KC8 Q;  2KGE A;  1M1K Q;  4PWV B;  4HKG A;  2XT1 A;  4M0I A;  1VKU A;  2FQ2 A;  1CEI A;  2KG6 A;  3LMO A;  2JBG A;  2BHV A;  3Q20 A;  2PEJ A;  3EJE A;  3CCJ P;  5HGM A;  1GPJ A;  2GDY A;  2KGA A;  2XZ1 C;  2GZE A;  2LF4 A;  5HGN A;  1K30 A;  3CC4 P;  5JPA A;  1Q81 Q;  4XFZ A;  2K94 A;  1QRJ A;  1AF8 A;  1NQ4 A;  1AYI A;  1QVF O;  2XZ0 D;  3NY7 B;  4XRO A;  1YI2 P;  2ROQ A;  3CC2 P;  4PH0 A;  4F37 A;  3G26 A;  1BXI A;  2FHS C;  1K9M Q;  2KG8 A;  1YJW P;  2JQ4 A;  2L0Q A;  5F2O A;  3DS3 A;  2FVA A;  2LPK A;  4U0D A;  2N98 A;  3DS2 A;  2L4B A;  2N50 A;  4H2Y C;  2GZJ A;  1QVG O;  1M6N A;  5BS1 A;  1F80 D;  4COC A;  3GJN A;  1YIT P;  2QNW A;  3CCS P;  2KWL A;  2K5X A;  3M1M A;  2EFJ A;  2LOL A;  3I56 P;  2ERH A;  4U0F A;  1VQ9 P;  1NJI Q;  2KR5 A;  2K92 A;  2KGD A;  2WPT A;  1T8K A;  3DS5 A;  4XFY A;  5HV8 A;  2N6Y A;  4CA3 A;  1EOQ A;  5CZD B;  2CGQ A;  2OTJ P;  2JO0 A;  1VQN P;  1ZNV A;  1K73 Q;  2VLQ A;  2VLN A;  4H2W C;  2KOR A;  2AF8 A;  3RG6 C;  2OTL P;  4UHP B;  2QEX P;  7CEI A;  2M8L A;  1UNK A;  2MVV A;  1X3O A;  2CG5 B;  3HYB A;  2XXM A;  3MGE A;  3NTE A;  3CC7 P;  3CMA P;  2AVA A;  3G28 A;  2KW2 A;  3GZL A;  2KOO A;  1ACP A;  3U43 A;  3CCQ P;  2JYG A;  4GR6 A;  2PY8 A;  2MR7 A;  2L9F A;  2CQ8 A;  3B4Q A;  4WYM A;  3G21 A;  2LIU A;  2CNR A;  3HZQ A;  3OW2 O;  2OAR A;  3G1I A;  2JB0 A;  3CCR P;  2P9X A;  2GYK A;  2PEM A;  2M5R A;  3B5I A;  2JYL A;  1KLP A;  2K0Y A;  2PEQ A;  5EJD A;  3G6E P;  2LKI A;  2JGP A;  2K0X A;  1YHQ P;  3CCU P;  3I55 P;  1RNI A;  1HY8 A;  3CCM P;  2FAD A;  2L6E A;  3GKL C;  3GZM A;  3CD6 P;  4U0C A;  1VQL P;  2NO8 A;  3DPH A;  3G29 A;  4QNB A;  5HGO A;  1KQS O;  3LRY A;  2Z44 A;  1A8O A;  2N5H A;  2FQ0 A;  2GDW A;  4PH1 A;  1K8A Q;  1A43 A;  2N6Z A;  1L0I A;  1Q7Y Q;  1BAJ A;  4IZ6 A;  2GZG A;  5DCK A;  1IMP A;  1MZ8 A;  2FVE A; 
#chains in the Genus database with same CATH homology
 1N8R Q;  1VQ5 P;  3NTE A;  3CC7 P;  3CMA P;  2PEO A;  4XFX A;  3G28 A;  2KOD A;  2LF4 A;  5HGN A;  1K30 A;  3CC4 P;  4U0A A;  1ZMB A;  5JPA A;  3VRL C;  3CCQ P;  1Q81 Q;  4XFZ A;  1VQ6 P;  2JYG A;  2M8N A;  4GR6 A;  2PY8 A;  1QRJ A;  1M74 A;  2Z45 A;  3CME P;  2EG5 A;  3CCL P;  3CPW O;  2PEK A;  1RO2 A;  5HGL A;  1IUQ A;  1Q86 Q;  5BS2 A;  4WYM A;  1QVF O;  2DGY A;  4XRO A;  1YI2 P;  3G21 A;  3CC2 P;  3HZQ A;  4PH0 A;  3OW2 O;  1W2B O;  2OAR A;  3E2D A;  1D1D A;  1AUM A;  3G1I A;  3G26 A;  3H0D A;  1Q82 Q;  3WBH A;  3CCR P;  4GR2 A;  1K9M Q;  1YJW P;  2P9X A;  2ONT A;  2E1M A;  5F2O A;  3DS3 A;  4COP A;  1YIJ P;  2PEM A;  2BUO A;  2QA4 P;  3DS0 A;  3B5I A;  1YJN P;  1VQP P;  4U0D A;  2JYL A;  3DS2 A;  1VQ8 P;  1YJ9 P;  2PEQ A;  1QVG O;  1M6N A;  3G6E P;  5BS1 A;  3CCE P;  2XV6 A;  1YHQ P;  4COC A;  3CCU P;  1VQM P;  3I55 P;  2PEN A;  1RNI A;  5I4T G;  1EIA A;  3H4E A;  2EIA A;  1YIT P;  3CCM P;  2CWO A;  3CCS P;  3M1M A;  2L6E A;  2EFJ A;  1RO0 A;  2M8P A;  3CCV P;  3DS4 A;  1VQ7 P;  3I56 P;  1JJ2 O;  3CD6 P;  3DS1 A;  4U0F A;  4U0C A;  1VQ9 P;  1VQO P;  1VQL P;  5F2N A;  3DPH A;  3G29 A;  1E6J P;  1NJI Q;  1S72 P;  4QNB A;  3P05 A;  2Z46 A;  3DTJ A;  5HGO A;  4IPY A;  3G0V A;  3LRY A;  1KQS O;  3G4S P;  1VQK P;  2Z44 A;  1M90 Q;  1A8O A;  4U0B A;  3G71 P;  3DS5 A;  4XFY A;  1KC8 Q;  1KD1 Q;  1EOQ A;  1M1K Q;  3G1G A;  4PH1 A;  4U0E A;  2OTJ P;  5F2K A;  2JO0 A;  1VQ4 P;  1VQN P;  1K73 Q;  3H47 A;  2PEI A;  4XRQ A;  2XT1 A;  4M0I A;  3CXC O;  1M6E X;  1K8A Q;  3RG6 C;  2OTL P;  2QEX P;  1A43 A;  2BHV A;  2M8L A;  3Q20 A;  1Q7Y Q;  1BAJ A;  2PEJ A;  5DCK A;  3HYB A;  2XXM A;  3CCJ P;  3MGE A;  5HGM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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