3G1GA

Crystal structure of the c-terminal domain from the rous sarcoma virus capsid protein: high ph
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
77
structure length
77
Chain Sequence
GPWADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Gag polyprotein
publication title Proton-linked dimerization of a retroviral capsid protein initiates capsid assembly
pubmed doi rcsb
source organism Rous sarcoma virus
molecule tags Viral protein
total genus 24
structure length 77
sequence length 77
chains with identical sequence B
ec nomenclature ec 3.4.23.-:
pdb deposition date 2009-01-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3g1gA00
2XV6A 2BUOA 3DTJA 3G0VA 4U0FA 3H47A 2M8PA 3H4EA 2LF4A 3DS3A 4PH1A 4U0EA 2M8LA 3G1IA 2JYLA 4XRQA 3G28A 3NTEA 1AUMA 4QNBA 1EOQA 3P05A 3VRLC 4XFXA 2KODA 5HGMA 1EIAA 4IPYA 4COPA 2JO0A 4XFYA 4U0BA 3DS2A 4U0AA 2JYGA 2L6EA 4U0DA 3G21A 4M0IA 4COCA 5DCKA 3DS4A 3LRYA 3DPHA 4XROA 1D1DA 5I4TG 1QRJA 2XT1A 1E6JP 1BAJA 4U0CA 4PH0A 5HGNA 2XXMA 3DS0A 4XFZA 3G1GA 5HGOA 1A43A 1A8OA 3G26A 4WYMA 3MGEA 3G29A 5HGLA 5JPAA 2M8NA 2ONTA 3DS1A 3DS5A 2EIAA
chains in the Genus database with same CATH superfamily
1M6EX 3RG2A 2FQ2A 1VQ6P 1UNKA 1QVGO 3G28A 2FADA 2GDXA 2JYGA 2GZJA 3CD6P 3B4QA 4HKGA 1K73Q 1IUQA 1S72P 1L0IA 1ZMBA 2GZEA 2CWOA 1GPJA 1EOQA 1HQBA 2X2BA 3CPWO 1VQMP 2K0YA 3H4EA 4PXHB 2JYLA 1VQ9P 3NTEA 4IPYA 1L0HA 3CCLP 2GZFA 2VLNA 2K93A 4H2YC 5HGOA 3G71P 3CCUP 1VQPP 3CC7P 2K5XA 2K0XA 4MRTC 2M8LA 1YIJP 1NQ4A 2PY8A 2N5IA 2PEOA 2LL8A 5KP6B 5I4TG 3EJDA 1BXIA 2P9XA 2L9FA 4IZ6A 1Z6MA 2JB0A 2NO8A 3G29A 2MVVA 5F2OA 3G4SP 1JJ2O 5F2NA 2ROQA 2MR8A 1KC8Q 2XZ0D 1ZNVA 2N6YA 2QNWA 3VRLC 2JU2A 4M0IA 1IMQA 2KOOA 1D1DA 1VKUA 3CXCO 2MY5A 1HY8A 3DS0A 2LIWA 3G26A 3MGEA 1VQOP 2EG5A 2FQ0A 3EJEA 1X3OA 2K92A 5HVCA 2KGAA 1K8AQ 2L0QA 2AF8A 3I56P 2PEMA 4DG9A 1EIAA 2FHSC 2CQ8A 3DS4A 5BS1A 2JAZA 1K9MQ 4XFZA 2MR7A 2XZ1C 2DNWA 3CC4P 4U0BA 2GZGA 2VLQA 1GXHA 2VSQA 2JU1A 2LF4A 1VQNP 5KP8B 4NEOA 3E2DA 2LPKA 1VQKP 4QNBA 2EHSA 2EHTA 2MVUA 2XT1A 1BAJA 3H0DA 1GXGA 3LMOA 2JGPA 2PENA 3I55P 5BS2A 2L4BA 2KORA 3H47A 3CCEP 1YJWP 2KOSA 3CCRP 4UHPB 2KG8A 2K2QA 5HGMA 4COPA 2KG6A 3LRYA 2VLPA 2K0DX 2OTJP 3CCVP 2KWLA 4U0CA 5HGNA 3U43A 1RO2A 2FACA 2WPTA 1MZ8A 2KR5A 2FVFA 3M1MA 1KLPA 2LKIA 3CMEP 1VQ8P 4BPGA 2KW2A 2MF4A 3G21A 1M6NA 1VQ7P 2GYKA 2PEKA 2KG9A 1M1KQ 3CCJP 2KOPA 1DV5A 2Z46A 3GZLA 3HYBA 2EIAA 2Z45A 3CCMP 4BPFA 3HZQA 3CCQP 2LTEA 4PWVB 5F2KA 4XROA 1E0HA 1QRJA 2AFEA 1VQ5P 2E1MA 2PEIA 1A8OA 1KQSO 5JPAA 2BUOA 2M8PA 2CG5B 1YHQP 1Q7YQ 4F37A 1T8KA 1VQ4P 1AUMA 1NJIQ 4GR6A 2JO0A 1CEIA 2JQ4A 1QVFO 1E6JP 1YJ9P 3GJNA 2FAEA 1UJZA 3CC2P 1Q82Q 1W2BO 4XFXA 4H2XC 4XFYA 3DS2A 1YI2P 3RG6C 5EJDA 2BHVA 4BPHA 2LMLA 5HGLA 3CCSP 1EMVA 7CEIA 1F80D 2GDWA 1Q81Q 2OARA 3GZMA 4GR2A 3CMAP 2CGQA 2KGCA 1AF8A 1DNYA 1YITP 2FVEA 1ACPA 3WBHA 1K30A 4U0EA 2VLOA 4H2WC 3EJBA 2MD9A 2LOLA 3P05A 2FVAA 4U0AA 2N50A 5HV8A 1AYIA 2ERHA 5CZDB 2M5RA 2XXMA 2PEJA 1OR5A 4WYMA 4R0MA 2N98A 2M8NA 2ONTA 1RO0A 2XV6A 3DTJA 3G1IA 2GZIA 4XRQA 2DGYA 2KODA 2N6ZA 1RNIA 4COCA 3DPHA 2AVAA 2L22A 2LIUA 2KGEA 3GKLC 3G1GA 2K94A 2PEQA 3G0VA 2Z44A 3OW2O 4QKOA 1Q86Q 2GDYA 2AFDA 2CNRA 3CE7A 2PNGA 2JBGA 3G6EP 1IMPA 5EW5E 1FR2A 2EFJA 2N5HA 2QEXP 3DS5A 4U0FA 3DS3A 4PH1A 3B5IA 2FQ1A 2QA4P 1M90Q 4U0DA 1KD1Q 2KGDA 2L6EA 4CA3A 1M74A 5DCKA 1VQLP 1VHNA 3NY7B 2KOQA 4PH0A 1YJNP 3Q20A 1N8RQ 1A43A 2OTLP 5KP7B 3DS1A
chains in the Genus database with same CATH topology
3WBHA 1M6EX 2Z45A 1K30A 4U0EA 3HZQA 3CCMP 1VQ6P 1QVGO 1K8AQ 3I56P 2PEMA 3G28A 3P05A 3CCQP 1EIAA 4U0AA 2JYGA 3DS4A 5F2KA 5BS1A 4XROA 3CD6P 1QRJA 1K73Q 1IUQA 1VQ5P 1S72P 1K9MQ 1ZMBA 2XXMA 4XFZA 2PEJA 2CWOA 2E1MA 2PEIA 1A8OA 4WYMA 1KQSO 3CC4P 5JPAA 2M8NA 1EOQA 2ONTA 1RO0A 4U0BA 3CPWO 2XV6A 2BUOA 3DTJA 1VQMP 2M8PA 3H4EA 2LF4A 1VQNP 1YHQP 3G1IA 1Q7YQ 2JYLA 4XRQA 2DGYA 1VQ4P 3E2DA 1VQ9P 1VQKP 3NTEA 1AUMA 4QNBA 2KODA 4IPYA 4GR6A 1NJIQ 1RNIA 2JO0A 4COCA 3DPHA 3CCLP 2XT1A 1E6JP 1QVFO 1BAJA 3H0DA 3G1GA 5HGOA 3G71P 3CCUP 2PENA 3I55P 1VQPP 1YJ9P 3CC7P 5BS2A 2PEQA 3G0VA 2Z44A 3H47A 3CCEP 2M8LA 3OW2O 1YIJP 1YJWP 3CC2P 1Q82Q 2PY8A 3CCRP 1Q86Q 2PEOA 1W2BO 4XFXA 5HGMA 4COPA 4XFYA 3DS2A 1YI2P 3LRYA 3G6EP 3RG6C 5I4TG 2OTJP 3CCVP 4U0CA 5HGNA 1RO2A 2BHVA 2P9XA 2EFJA 2QEXP 5HGLA 3G29A 5F2OA 3DS5A 3G4SP 4U0FA 3CCSP 1JJ2O 5F2NA 3DS3A 4PH1A 3M1MA 3B5IA 1KC8Q 3CMEP 2QA4P 3VRLC 1VQ8P 1M90Q 1Q81Q 4U0DA 1KD1Q 2L6EA 1M74A 3G21A 4M0IA 1M6NA 5DCKA 1VQ7P 1VQLP 2OARA 2PEKA 1D1DA 1M1KQ 4PH0A 3CXCO 4GR2A 3DS0A 1YJNP 3CMAP 3Q20A 3CCJP 1N8RQ 1A43A 2OTLP 3G26A 3MGEA 1YITP 1VQOP 2EG5A 2Z46A 3DS1A 3HYBA 2EIAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XV6 A;  2BUO A;  3DTJ A;  3G0V A;  4U0F A;  3H47 A;  2M8P A;  3H4E A;  2LF4 A;  3DS3 A;  4PH1 A;  4U0E A;  2M8L A;  3G1I A;  2JYL A;  4XRQ A;  3G28 A;  3NTE A;  1AUM A;  4QNB A;  1EOQ A;  3P05 A;  3VRL C;  4XFX A;  2KOD A;  5HGM A;  1EIA A;  4IPY A;  4COP A;  2JO0 A;  4XFY A;  4U0B A;  3DS2 A;  4U0A A;  2JYG A;  2L6E A;  4U0D A;  3G21 A;  4M0I A;  4COC A;  5DCK A;  3DS4 A;  3LRY A;  3DPH A;  4XRO A;  1D1D A;  5I4T G;  1QRJ A;  2XT1 A;  1E6J P;  1BAJ A;  4U0C A;  4PH0 A;  5HGN A;  2XXM A;  3DS0 A;  4XFZ A;  3G1G A;  5HGO A;  1A43 A;  1A8O A;  3G26 A;  4WYM A;  3MGE A;  3G29 A;  5HGL A;  5JPA A;  2M8N A;  2ONT A;  3DS1 A;  3DS5 A;  2EIA A; 
#chains in the Genus database with same CATH topology
 1M6E X;  3RG2 A;  2FQ2 A;  1VQ6 P;  1UNK A;  1QVG O;  3G28 A;  2FAD A;  2GDX A;  2JYG A;  2GZJ A;  3CD6 P;  3B4Q A;  4HKG A;  1K73 Q;  1IUQ A;  1S72 P;  1L0I A;  1ZMB A;  2GZE A;  2CWO A;  1GPJ A;  1EOQ A;  1HQB A;  2X2B A;  3CPW O;  1VQM P;  2K0Y A;  3H4E A;  4PXH B;  2JYL A;  1VQ9 P;  3NTE A;  4IPY A;  1L0H A;  3CCL P;  2GZF A;  2VLN A;  2K93 A;  4H2Y C;  5HGO A;  3G71 P;  3CCU P;  1VQP P;  3CC7 P;  2K5X A;  2K0X A;  4MRT C;  2M8L A;  1YIJ P;  1NQ4 A;  2PY8 A;  2N5I A;  2PEO A;  2LL8 A;  5KP6 B;  5I4T G;  3EJD A;  1BXI A;  2P9X A;  2L9F A;  4IZ6 A;  1Z6M A;  2JB0 A;  2NO8 A;  3G29 A;  2MVV A;  5F2O A;  3G4S P;  1JJ2 O;  5F2N A;  2ROQ A;  2MR8 A;  1KC8 Q;  2XZ0 D;  1ZNV A;  2N6Y A;  2QNW A;  3VRL C;  2JU2 A;  4M0I A;  1IMQ A;  2KOO A;  1D1D A;  1VKU A;  3CXC O;  2MY5 A;  1HY8 A;  3DS0 A;  2LIW A;  3G26 A;  3MGE A;  1VQO P;  2EG5 A;  2FQ0 A;  3EJE A;  1X3O A;  2K92 A;  5HVC A;  2KGA A;  1K8A Q;  2L0Q A;  2AF8 A;  3I56 P;  2PEM A;  4DG9 A;  1EIA A;  2FHS C;  2CQ8 A;  3DS4 A;  5BS1 A;  2JAZ A;  1K9M Q;  4XFZ A;  2MR7 A;  2XZ1 C;  2DNW A;  3CC4 P;  4U0B A;  2GZG A;  2VLQ A;  1GXH A;  2VSQ A;  2JU1 A;  2LF4 A;  1VQN P;  5KP8 B;  4NEO A;  3E2D A;  2LPK A;  1VQK P;  4QNB A;  2EHS A;  2EHT A;  2MVU A;  2XT1 A;  1BAJ A;  3H0D A;  1GXG A;  3LMO A;  2JGP A;  2PEN A;  3I55 P;  5BS2 A;  2L4B A;  2KOR A;  3H47 A;  3CCE P;  1YJW P;  2KOS A;  3CCR P;  4UHP B;  2KG8 A;  2K2Q A;  5HGM A;  4COP A;  2KG6 A;  3LRY A;  2VLP A;  2K0D X;  2OTJ P;  3CCV P;  2KWL A;  4U0C A;  5HGN A;  3U43 A;  1RO2 A;  2FAC A;  2WPT A;  1MZ8 A;  2KR5 A;  2FVF A;  3M1M A;  1KLP A;  2LKI A;  3CME P;  1VQ8 P;  4BPG A;  2KW2 A;  2MF4 A;  3G21 A;  1M6N A;  1VQ7 P;  2GYK A;  2PEK A;  2KG9 A;  1M1K Q;  3CCJ P;  2KOP A;  1DV5 A;  2Z46 A;  3GZL A;  3HYB A;  2EIA A;  2Z45 A;  3CCM P;  4BPF A;  3HZQ A;  3CCQ P;  2LTE A;  4PWV B;  5F2K A;  4XRO A;  1E0H A;  1QRJ A;  2AFE A;  1VQ5 P;  2E1M A;  2PEI A;  1A8O A;  1KQS O;  5JPA A;  2BUO A;  2M8P A;  2CG5 B;  1YHQ P;  1Q7Y Q;  4F37 A;  1T8K A;  1VQ4 P;  1AUM A;  1NJI Q;  4GR6 A;  2JO0 A;  1CEI A;  2JQ4 A;  1QVF O;  1E6J P;  1YJ9 P;  3GJN A;  2FAE A;  1UJZ A;  3CC2 P;  1Q82 Q;  1W2B O;  4XFX A;  4H2X C;  4XFY A;  3DS2 A;  1YI2 P;  3RG6 C;  5EJD A;  2BHV A;  4BPH A;  2LML A;  5HGL A;  3CCS P;  1EMV A;  7CEI A;  1F80 D;  2GDW A;  1Q81 Q;  2OAR A;  3GZM A;  4GR2 A;  3CMA P;  2CGQ A;  2KGC A;  1AF8 A;  1DNY A;  1YIT P;  2FVE A;  1ACP A;  3WBH A;  1K30 A;  4U0E A;  2VLO A;  4H2W C;  3EJB A;  2MD9 A;  2LOL A;  3P05 A;  2FVA A;  4U0A A;  2N50 A;  5HV8 A;  1AYI A;  2ERH A;  5CZD B;  2M5R A;  2XXM A;  2PEJ A;  1OR5 A;  4WYM A;  4R0M A;  2N98 A;  2M8N A;  2ONT A;  1RO0 A;  2XV6 A;  3DTJ A;  3G1I A;  2GZI A;  4XRQ A;  2DGY A;  2KOD A;  2N6Z A;  1RNI A;  4COC A;  3DPH A;  2AVA A;  2L22 A;  2LIU A;  2KGE A;  3GKL C;  3G1G A;  2K94 A;  2PEQ A;  3G0V A;  2Z44 A;  3OW2 O;  4QKO A;  1Q86 Q;  2GDY A;  2AFD A;  2CNR A;  3CE7 A;  2PNG A;  2JBG A;  3G6E P;  1IMP A;  5EW5 E;  1FR2 A;  2EFJ A;  2N5H A;  2QEX P;  3DS5 A;  4U0F A;  3DS3 A;  4PH1 A;  3B5I A;  2FQ1 A;  2QA4 P;  1M90 Q;  4U0D A;  1KD1 Q;  2KGD A;  2L6E A;  4CA3 A;  1M74 A;  5DCK A;  1VQL P;  1VHN A;  3NY7 B;  2KOQ A;  4PH0 A;  1YJN P;  3Q20 A;  1N8R Q;  1A43 A;  2OTL P;  5KP7 B;  3DS1 A; 
#chains in the Genus database with same CATH homology
 3WBH A;  1M6E X;  2Z45 A;  1K30 A;  4U0E A;  3HZQ A;  3CCM P;  1VQ6 P;  1QVG O;  1K8A Q;  3I56 P;  2PEM A;  3G28 A;  3P05 A;  3CCQ P;  1EIA A;  4U0A A;  2JYG A;  3DS4 A;  5F2K A;  5BS1 A;  4XRO A;  3CD6 P;  1QRJ A;  1K73 Q;  1IUQ A;  1VQ5 P;  1S72 P;  1K9M Q;  1ZMB A;  2XXM A;  4XFZ A;  2PEJ A;  2CWO A;  2E1M A;  2PEI A;  1A8O A;  4WYM A;  1KQS O;  3CC4 P;  5JPA A;  2M8N A;  1EOQ A;  2ONT A;  1RO0 A;  4U0B A;  3CPW O;  2XV6 A;  2BUO A;  3DTJ A;  1VQM P;  2M8P A;  3H4E A;  2LF4 A;  1VQN P;  1YHQ P;  3G1I A;  1Q7Y Q;  2JYL A;  4XRQ A;  2DGY A;  1VQ4 P;  3E2D A;  1VQ9 P;  1VQK P;  3NTE A;  1AUM A;  4QNB A;  2KOD A;  4IPY A;  4GR6 A;  1NJI Q;  1RNI A;  2JO0 A;  4COC A;  3DPH A;  3CCL P;  2XT1 A;  1E6J P;  1QVF O;  1BAJ A;  3H0D A;  3G1G A;  5HGO A;  3G71 P;  3CCU P;  2PEN A;  3I55 P;  1VQP P;  1YJ9 P;  3CC7 P;  5BS2 A;  2PEQ A;  3G0V A;  2Z44 A;  3H47 A;  3CCE P;  2M8L A;  3OW2 O;  1YIJ P;  1YJW P;  3CC2 P;  1Q82 Q;  2PY8 A;  3CCR P;  1Q86 Q;  2PEO A;  1W2B O;  4XFX A;  5HGM A;  4COP A;  4XFY A;  3DS2 A;  1YI2 P;  3LRY A;  3G6E P;  3RG6 C;  5I4T G;  2OTJ P;  3CCV P;  4U0C A;  5HGN A;  1RO2 A;  2BHV A;  2P9X A;  2EFJ A;  2QEX P;  5HGL A;  3G29 A;  5F2O A;  3DS5 A;  3G4S P;  4U0F A;  3CCS P;  1JJ2 O;  5F2N A;  3DS3 A;  4PH1 A;  3M1M A;  3B5I A;  1KC8 Q;  3CME P;  2QA4 P;  3VRL C;  1VQ8 P;  1M90 Q;  1Q81 Q;  4U0D A;  1KD1 Q;  2L6E A;  1M74 A;  3G21 A;  4M0I A;  1M6N A;  5DCK A;  1VQ7 P;  1VQL P;  2OAR A;  2PEK A;  1D1D A;  1M1K Q;  4PH0 A;  3CXC O;  4GR2 A;  3DS0 A;  1YJN P;  3CMA P;  3Q20 A;  3CCJ P;  1N8R Q;  1A43 A;  2OTL P;  3G26 A;  3MGE A;  1YIT P;  1VQO P;  2EG5 A;  2Z46 A;  3DS1 A;  3HYB A;  2EIA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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