3G1GA

Crystal structure of the c-terminal domain from the rous sarcoma virus capsid protein: high ph
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
77
structure length
77
Chain Sequence
GPWADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Proton-linked dimerization of a retroviral capsid protein initiates capsid assembly
pubmed doi rcsb
source organism Rous sarcoma virus
molecule tags Viral protein
molecule keywords Gag polyprotein
total genus 24
structure length 77
sequence length 77
chains with identical sequence B
ec nomenclature ec 3.4.23.-:
pdb deposition date 2009-01-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3g1gA00
1EIAA 1QRJA 2M8NA 4U0CA 5HGOA 1AUMA 3G0VA 5HGMA 4QNBA 4XROA 3H47A 3DS0A 2LF4A 2M8PA 2XV6A 2M8LA 2ONTA 1A8OA 3NTEA 3G1IA 3G26A 3MGEA 3LRYA 4XRQA 2KODA 4XFXA 4COCA 4COPA 3VRLC 5DCKA 2XXMA 4M0IA 3DS2A 4U0BA 2L6EA 4U0AA 3DPHA 3DS4A 3G29A 3DTJA 4U0FA 2EIAA 3DS1A 3G21A 5HGLA 3G1GA 5HGNA 4U0EA 1A43A 4WYMA 3G28A 4XFZA 2BUOA 4U0DA 4XFYA 1BAJA 4IPYA 3DS5A 4PH1A 5I4TG 1EOQA 1E6JP 3P05A 1D1DA 5JPAA 3DS3A 3H4EA 4PH0A 2XT1A 2JYLA 2JO0A 2JYGA
chains in the Genus database with same CATH superfamily
5HGMA 3H47A 1Q7YQ 2LPKA 2VLPA 2MD9A 3G1IA 2KG6A 1T8KA 3VRLC 1K9MQ 3CMAP 4U0FA 3RG6C 1FR2A 2N50A 3HYBA 2XZ0D 3B5IA 1YI2P 1RO0A 3CMEP 4IPYA 4QNBA 1M1KQ 3DS0A 3CCVP 3M1MA 2EFJA 3MGEA 2EG5A 2KWLA 4M0IA 2L6EA 5EJDA 2KW2A 1A43A 2Z45A 3CCJP 4GR6A 2XT1A 2XXMA 2X2BA 5KP8B 2K2QA 4R0MA 1VQOP 2VLQA 2LTEA 2CGQA 3DS1A 3HZQA 2CWOA 2GDXA 5F2KA 4UHPB 5I4TG 1VQ6P 3DS5A 1VQKP 1E6JP 2N6ZA 7CEIA 2GZEA 1AF8A 1EIAA 2AFDA 2JU1A 3U43A 1OR5A 1E0HA 2ERHA 3CCSP 2KOPA 1Q86Q 2KOSA 2L9FA 4U0BA 1QVFO 1BXIA 2N5IA 4QKOA 3EJDA 3CCUP 2PEJA 2GZGA 1AUMA 1K73Q 1YJ9P 2MVVA 2L0QA 2LIUA 5F2NA 5BS1A 3GZMA 2K0XA 2K93A 3Q20A 3G21A 3GJNA 2ROQA 1JJ2O 4F37A 2DNWA 2L4BA 3H4EA 2P9XA 2PEQA 2KGEA 2PEMA 2LF4A 2LOLA 4IZ6A 3LMOA 2KR5A 1VQMP 2KG8A 4BPHA 4U0AA 3DS4A 2MY5A 2EIAA 2K0YA 1L0HA 1S72P 4U0DA 2E1MA 2PEKA 2K0DX 3P05A 3CC2P 2AF8A 5EW5E 3RG2A 2L22A 4BPGA 1VHNA 2FVAA 3CE7A 3CPWO 1VKUA 4HKGA 2EHSA 2PENA 3CCLP 1M6EX 2OTJP 2QNWA 4U0EA 2FAEA 4BPFA 4PH0A 2FQ2A 2N6YA 2DGYA 3WBHA 5DCKA 1DV5A 5HGLA 3I55P 1KD1Q 4XFZA 4PH1A 2FHSC 3EJEA 1AYIA 1UJZA 2EHTA 1VQNP 1KQSO 2N5HA 2FVFA 1ACPA 4XRQA 4XFXA 1VQPP 1M90Q 3CC7P 2FVEA 1VQ5P 2LL8A 3CC4P 3G6EP 2FQ1A 2GDYA 2CG5B 3G1GA 3G28A 3G71P 1EOQA 2MVUA 2Z44A 2JYLA 2AVAA 3DTJA 2Z46A 1YJWP 5HGOA 4CA3A 2VLNA 2M8PA 2KGDA 4H2WC 3CCMP 2PEOA 1Q82Q 2KOQA 2LMLA 1X3OA 2JAZA 2FQ0A 2BHVA 2JB0A 1K8AQ 3NY7B 5JPAA 1VQ7P 2JYGA 1ZMBA 1A8OA 2OARA 3EJBA 1RO2A 2KODA 2CNRA 2KGAA 5KP7B 1DNYA 1NJIQ 2WPTA 2JBGA 3G4SP 2BUOA 2M5RA 1VQ9P 2AFEA 2JO0A 3I56P 1W2BO 2KGCA 3GKLC 2GDWA 2JQ4A 2LIWA 1EMVA 2JGPA 2ONTA 2M8LA 2VLOA 2QA4P 5HV8A 1GPJA 2FADA 4PWVB 5HGNA 4PXHB 1M74A 5HVCA 1Z6MA 4WYMA 2QEXP 2K94A 1YHQP 4H2XC 1YJNP 3G0VA 1KC8Q 5KP6B 1VQ4P 2FACA 1VQLP 2K92A 3LRYA 1KLPA 1K30A 3DPHA 3CXCO 2NO8A 1VQ8P 3OW2O 1YITP 2PY8A 1HQBA 1D1DA 5BS2A 2GZJA 1GXGA 1QRJA 2KORA 1NQ4A 1IMPA 3G26A 1MZ8A 4H2YC 2N98A 3CD6P 2OTLP 1YIJP 3DS2A 2LKIA 1F80D 1CEIA 3CCRP 2JU2A 2M8NA 2PEIA 5CZDB 1ZNVA 2GYKA 3CCEP 4COCA 1RNIA 2XZ1C 4GR2A 2CQ8A 5F2OA 2MR8A 3E2DA 1Q81Q 2MF4A 2MR7A 2KG9A 2PNGA 1N8RQ 4XFYA 3B4QA 2GZFA 4U0CA 4XROA 2GZIA 1IUQA 2K5XA 2XV6A 3H0DA 1HY8A 4COPA 1L0IA 2VSQA 1GXHA 1QVGO 2KOOA 3G29A 4NEOA 1M6NA 1IMQA 1BAJA 3GZLA 3CCQP 3DS3A 1UNKA 4DG9A 3NTEA 4MRTC
chains in the Genus database with same CATH topology
1AUMA 3G0VA 5HGMA 1K73Q 1KC8Q 3H47A 1YJ9P 1VQNP 1Q7YQ 1VQ4P 1KQSO 1VQLP 3G1IA 5F2NA 3LRYA 4XRQA 4XFXA 5BS1A 3VRLC 1K9MQ 3CMAP 1VQPP 1M90Q 3CC7P 1K30A 1VQ5P 3CC4P 3DPHA 4U0FA 3Q20A 3G6EP 3G21A 3CXCO 1YJNP 3G1GA 3RG6C 1JJ2O 1VQ8P 3OW2O 1YITP 3G28A 3HYBA 3G71P 2PY8A 3B5IA 1EOQA 1YI2P 2Z44A 1D1DA 1RO0A 5BS2A 3H4EA 2P9XA 2PEQA 3CMEP 4IPYA 2JYLA 3DTJA 2Z46A 1QRJA 1YJWP 5HGOA 4QNBA 2PEMA 1M1KQ 3DS0A 3CCVP 2LF4A 2M8PA 3M1MA 2EFJA 3G26A 3CCMP 3MGEA 2EG5A 2PEOA 1Q82Q 1VQMP 3CD6P 2OTLP 1YIJP 4M0IA 3DS2A 2L6EA 4U0AA 3DS4A 2EIAA 2BHVA 1K8AQ 1A43A 2Z45A 3CCJP 1S72P 4U0DA 2E1MA 2PEKA 4GR6A 3P05A 5JPAA 1VQ7P 2XT1A 3CCRP 3CC2P 2XXMA 2JYGA 2M8NA 1ZMBA 2PEIA 1A8OA 2OARA 1RO2A 3CCEP 4COCA 2KODA 1RNIA 3CPWO 4GR2A 5F2OA 1VQOP 3E2DA 1Q81Q 2PENA 3CCLP 1M6EX 2OTJP 3DS1A 1NJIQ 3HZQA 2CWOA 4U0EA 3G4SP 5F2KA 2BUOA 1N8RQ 4XFYA 5I4TG 1VQ9P 3DS5A 1VQ6P 1VQKP 1E6JP 4PH0A 2JO0A 1EIAA 3I56P 4U0CA 1W2BO 4XROA 1IUQA 2XV6A 2M8LA 2ONTA 3H0DA 2DGYA 2QA4P 3WBHA 3CCSP 4COPA 5DCKA 1Q86Q 4U0BA 1QVGO 3G29A 1QVFO 5HGLA 5HGNA 1M74A 3I55P 1M6NA 1KD1Q 4WYMA 2QEXP 4XFZA 1BAJA 3CCQP 4PH1A 1YHQP 3DS3A 3CCUP 3NTEA 2PEJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EIA A;  1QRJ A;  2M8N A;  4U0C A;  5HGO A;  1AUM A;  3G0V A;  5HGM A;  4QNB A;  4XRO A;  3H47 A;  3DS0 A;  2LF4 A;  2M8P A;  2XV6 A;  2M8L A;  2ONT A;  1A8O A;  3NTE A;  3G1I A;  3G26 A;  3MGE A;  3LRY A;  4XRQ A;  2KOD A;  4XFX A;  4COC A;  4COP A;  3VRL C;  5DCK A;  2XXM A;  4M0I A;  3DS2 A;  4U0B A;  2L6E A;  4U0A A;  3DPH A;  3DS4 A;  3G29 A;  3DTJ A;  4U0F A;  2EIA A;  3DS1 A;  3G21 A;  5HGL A;  3G1G A;  5HGN A;  4U0E A;  1A43 A;  4WYM A;  3G28 A;  4XFZ A;  2BUO A;  4U0D A;  4XFY A;  1BAJ A;  4IPY A;  3DS5 A;  4PH1 A;  5I4T G;  1EOQ A;  1E6J P;  3P05 A;  1D1D A;  5JPA A;  3DS3 A;  3H4E A;  4PH0 A;  2XT1 A;  2JYL A;  2JO0 A;  2JYG A; 
#chains in the Genus database with same CATH topology
 5HGM A;  3H47 A;  1Q7Y Q;  2LPK A;  2VLP A;  2MD9 A;  3G1I A;  2KG6 A;  1T8K A;  3VRL C;  1K9M Q;  3CMA P;  4U0F A;  3RG6 C;  1FR2 A;  2N50 A;  3HYB A;  2XZ0 D;  3B5I A;  1YI2 P;  1RO0 A;  3CME P;  4IPY A;  4QNB A;  1M1K Q;  3DS0 A;  3CCV P;  3M1M A;  2EFJ A;  3MGE A;  2EG5 A;  2KWL A;  4M0I A;  2L6E A;  5EJD A;  2KW2 A;  1A43 A;  2Z45 A;  3CCJ P;  4GR6 A;  2XT1 A;  2XXM A;  2X2B A;  5KP8 B;  2K2Q A;  4R0M A;  1VQO P;  2VLQ A;  2LTE A;  2CGQ A;  3DS1 A;  3HZQ A;  2CWO A;  2GDX A;  5F2K A;  4UHP B;  5I4T G;  1VQ6 P;  3DS5 A;  1VQK P;  1E6J P;  2N6Z A;  7CEI A;  2GZE A;  1AF8 A;  1EIA A;  2AFD A;  2JU1 A;  3U43 A;  1OR5 A;  1E0H A;  2ERH A;  3CCS P;  2KOP A;  1Q86 Q;  2KOS A;  2L9F A;  4U0B A;  1QVF O;  1BXI A;  2N5I A;  4QKO A;  3EJD A;  3CCU P;  2PEJ A;  2GZG A;  1AUM A;  1K73 Q;  1YJ9 P;  2MVV A;  2L0Q A;  2LIU A;  5F2N A;  5BS1 A;  3GZM A;  2K0X A;  2K93 A;  3Q20 A;  3G21 A;  3GJN A;  2ROQ A;  1JJ2 O;  4F37 A;  2DNW A;  2L4B A;  3H4E A;  2P9X A;  2PEQ A;  2KGE A;  2PEM A;  2LF4 A;  2LOL A;  4IZ6 A;  3LMO A;  2KR5 A;  1VQM P;  2KG8 A;  4BPH A;  4U0A A;  3DS4 A;  2MY5 A;  2EIA A;  2K0Y A;  1L0H A;  1S72 P;  4U0D A;  2E1M A;  2PEK A;  2K0D X;  3P05 A;  3CC2 P;  2AF8 A;  5EW5 E;  3RG2 A;  2L22 A;  4BPG A;  1VHN A;  2FVA A;  3CE7 A;  3CPW O;  1VKU A;  4HKG A;  2EHS A;  2PEN A;  3CCL P;  1M6E X;  2OTJ P;  2QNW A;  4U0E A;  2FAE A;  4BPF A;  4PH0 A;  2FQ2 A;  2N6Y A;  2DGY A;  3WBH A;  5DCK A;  1DV5 A;  5HGL A;  3I55 P;  1KD1 Q;  4XFZ A;  4PH1 A;  2FHS C;  3EJE A;  1AYI A;  1UJZ A;  2EHT A;  1VQN P;  1KQS O;  2N5H A;  2FVF A;  1ACP A;  4XRQ A;  4XFX A;  1VQP P;  1M90 Q;  3CC7 P;  2FVE A;  1VQ5 P;  2LL8 A;  3CC4 P;  3G6E P;  2FQ1 A;  2GDY A;  2CG5 B;  3G1G A;  3G28 A;  3G71 P;  1EOQ A;  2MVU A;  2Z44 A;  2JYL A;  2AVA A;  3DTJ A;  2Z46 A;  1YJW P;  5HGO A;  4CA3 A;  2VLN A;  2M8P A;  2KGD A;  4H2W C;  3CCM P;  2PEO A;  1Q82 Q;  2KOQ A;  2LML A;  1X3O A;  2JAZ A;  2FQ0 A;  2BHV A;  2JB0 A;  1K8A Q;  3NY7 B;  5JPA A;  1VQ7 P;  2JYG A;  1ZMB A;  1A8O A;  2OAR A;  3EJB A;  1RO2 A;  2KOD A;  2CNR A;  2KGA A;  5KP7 B;  1DNY A;  1NJI Q;  2WPT A;  2JBG A;  3G4S P;  2BUO A;  2M5R A;  1VQ9 P;  2AFE A;  2JO0 A;  3I56 P;  1W2B O;  2KGC A;  3GKL C;  2GDW A;  2JQ4 A;  2LIW A;  1EMV A;  2JGP A;  2ONT A;  2M8L A;  2VLO A;  2QA4 P;  5HV8 A;  1GPJ A;  2FAD A;  4PWV B;  5HGN A;  4PXH B;  1M74 A;  5HVC A;  1Z6M A;  4WYM A;  2QEX P;  2K94 A;  1YHQ P;  4H2X C;  1YJN P;  3G0V A;  1KC8 Q;  5KP6 B;  1VQ4 P;  2FAC A;  1VQL P;  2K92 A;  3LRY A;  1KLP A;  1K30 A;  3DPH A;  3CXC O;  2NO8 A;  1VQ8 P;  3OW2 O;  1YIT P;  2PY8 A;  1HQB A;  1D1D A;  5BS2 A;  2GZJ A;  1GXG A;  1QRJ A;  2KOR A;  1NQ4 A;  1IMP A;  3G26 A;  1MZ8 A;  4H2Y C;  2N98 A;  3CD6 P;  2OTL P;  1YIJ P;  3DS2 A;  2LKI A;  1F80 D;  1CEI A;  3CCR P;  2JU2 A;  2M8N A;  2PEI A;  5CZD B;  1ZNV A;  2GYK A;  3CCE P;  4COC A;  1RNI A;  2XZ1 C;  4GR2 A;  2CQ8 A;  5F2O A;  2MR8 A;  3E2D A;  1Q81 Q;  2MF4 A;  2MR7 A;  2KG9 A;  2PNG A;  1N8R Q;  4XFY A;  3B4Q A;  2GZF A;  4U0C A;  4XRO A;  2GZI A;  1IUQ A;  2K5X A;  2XV6 A;  3H0D A;  1HY8 A;  4COP A;  1L0I A;  2VSQ A;  1GXH A;  1QVG O;  2KOO A;  3G29 A;  4NEO A;  1M6N A;  1IMQ A;  1BAJ A;  3GZL A;  3CCQ P;  3DS3 A;  1UNK A;  4DG9 A;  3NTE A;  4MRT C; 
#chains in the Genus database with same CATH homology
 1AUM A;  3G0V A;  5HGM A;  1K73 Q;  1KC8 Q;  3H47 A;  1YJ9 P;  1VQN P;  1Q7Y Q;  1VQ4 P;  1KQS O;  1VQL P;  3G1I A;  5F2N A;  3LRY A;  4XRQ A;  4XFX A;  5BS1 A;  3VRL C;  1K9M Q;  3CMA P;  1VQP P;  1M90 Q;  3CC7 P;  1K30 A;  1VQ5 P;  3CC4 P;  3DPH A;  4U0F A;  3Q20 A;  3G6E P;  3G21 A;  3CXC O;  1YJN P;  3G1G A;  3RG6 C;  1JJ2 O;  1VQ8 P;  3OW2 O;  1YIT P;  3G28 A;  3HYB A;  3G71 P;  2PY8 A;  3B5I A;  1EOQ A;  1YI2 P;  2Z44 A;  1D1D A;  1RO0 A;  5BS2 A;  3H4E A;  2P9X A;  2PEQ A;  3CME P;  4IPY A;  2JYL A;  3DTJ A;  2Z46 A;  1QRJ A;  1YJW P;  5HGO A;  4QNB A;  2PEM A;  1M1K Q;  3DS0 A;  3CCV P;  2LF4 A;  2M8P A;  3M1M A;  2EFJ A;  3G26 A;  3CCM P;  3MGE A;  2EG5 A;  2PEO A;  1Q82 Q;  1VQM P;  3CD6 P;  2OTL P;  1YIJ P;  4M0I A;  3DS2 A;  2L6E A;  4U0A A;  3DS4 A;  2EIA A;  2BHV A;  1K8A Q;  1A43 A;  2Z45 A;  3CCJ P;  1S72 P;  4U0D A;  2E1M A;  2PEK A;  4GR6 A;  3P05 A;  5JPA A;  1VQ7 P;  2XT1 A;  3CCR P;  3CC2 P;  2XXM A;  2JYG A;  2M8N A;  1ZMB A;  2PEI A;  1A8O A;  2OAR A;  1RO2 A;  3CCE P;  4COC A;  2KOD A;  1RNI A;  3CPW O;  4GR2 A;  5F2O A;  1VQO P;  3E2D A;  1Q81 Q;  2PEN A;  3CCL P;  1M6E X;  2OTJ P;  3DS1 A;  1NJI Q;  3HZQ A;  2CWO A;  4U0E A;  3G4S P;  5F2K A;  2BUO A;  1N8R Q;  4XFY A;  5I4T G;  1VQ9 P;  3DS5 A;  1VQ6 P;  1VQK P;  1E6J P;  4PH0 A;  2JO0 A;  1EIA A;  3I56 P;  4U0C A;  1W2B O;  4XRO A;  1IUQ A;  2XV6 A;  2M8L A;  2ONT A;  3H0D A;  2DGY A;  2QA4 P;  3WBH A;  3CCS P;  4COP A;  5DCK A;  1Q86 Q;  4U0B A;  1QVG O;  3G29 A;  1QVF O;  5HGL A;  5HGN A;  1M74 A;  3I55 P;  1M6N A;  1KD1 Q;  4WYM A;  2QEX P;  4XFZ A;  1BAJ A;  3CCQ P;  4PH1 A;  1YHQ P;  3DS3 A;  3CCU P;  3NTE A;  2PEJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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