1IMQA

Colicin e9 immunity protein im9, nmr, minimized average structure
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
86
structure length
86
Chain Sequence
MELKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords IM9
publication title Three-dimensional solution structure and 13C nuclear magnetic resonance assignments of the colicin E9 immunity protein Im9.
pubmed doi rcsb
molecule tags Bacteriocin
total genus 19
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 1996-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1imqA00
2GYKA 1CEIA 2WPTA 1IMQA 1GXGA 2GZIA 7CEIA 4F37A 1GXHA 1FR2A 1AYIA 1MZ8A 2K0DX 4QKOA 1E0HA 1UJZA 2JB0A 2GZGA 2GZFA 1IMPA 1BXIA 2GZJA 2GZEA 2VLPA 4UHPB 3GKLC 2VLQA 2VLNA 2ERHA 2K5XA 2JAZA 2VLOA 2JBGA 3U43A 3GJNA 1ZNVA 2NO8A 1UNKA 5EW5E 1EMVA
chains in the Genus database with same CATH superfamily
2EIAA 2N50A 2JU2A 3CC2P 2FVAA 4H2WC 2LF4A 4H2XC 2KWLA 4COCA 1K9MQ 3CPWO 1E6JP 2CG5B 3G71P 5F2KA 2EG5A 1VKUA 2LKIA 4QKOA 1K73Q 4U0CA 3P05A 3CCJP 1RNIA 2K0DX 5HVCA 2GDYA 2CQ8A 4PH1A 1VQ9P 4DG9A 3CCRP 1Q7YQ 1IUQA 2K0XA 2FQ2A 2VLNA 3RG6C 3VRLC 2XT1A 1HY8A 4H2YC 2ONTA 1VQKP 2JYLA 1IMQA 3NTEA 2KGCA 3HZQA 1T8KA 2XV6A 2AFDA 1YIJP 3Q20A 1ZMBA 2LTEA 2DGYA 1RO0A 1VQ6P 5DCKA 2OARA 2LMLA 3LRYA 1F80D 2KOOA 2GZIA 2L4BA 1VQ8P 2BUOA 4U0DA 2MVUA 3I55P 5HV8A 2M8PA 1IMPA 2PEKA 2PEIA 1NJIQ 2GDXA 2OTLP 2KGAA 3EJEA 1DV5A 1AF8A 1S72P 3MGEA 2AFEA 1QVGO 1X3OA 1ZNVA 3RG2A 2LIUA 2OTJP 7CEIA 1GXHA 3M1MA 5BS1A 2GZGA 3CCSP 5HGOA 2Z46A 4UHPB 3DS2A 1K30A 2PEJA 2ERHA 4HKGA 1QRJA 2N6ZA 1UJZA 1M90Q 2FVEA 1D1DA 3LMOA 2KGDA 2KR5A 3G26A 1W2BO 2KOSA 3CCQP 2KOQA 3DS1A 2L9FA 4CA3A 2K94A 1NQ4A 2VLPA 1VQLP 2E1MA 2K93A 4U0AA 2BHVA 4WYMA 1YITP 2JBGA 4BPHA 1BAJA 5JPAA 2EHTA 1VQ7P 2FQ0A 1M6NA 4NEOA 4IZ6A 1BXIA 3CCVP 3GZMA 3DPHA 2KOPA 4GR2A 1QVFO 3H0DA 2PY8A 4R0MA 1EIAA 2QEXP 4U0FA 4XFZA 3U43A 3GJNA 2CNRA 2JU1A 2PEMA 2FQ1A 1Q86Q 3E2DA 1L0HA 5HGMA 5I4TG 1RO2A 2DNWA 1A8OA 2GZJA 2MR8A 2N6YA 4GR6A 2MF4A 1EOQA 3DS0A 5KP8B 5KP7B 2P9XA 1Q82Q 2KORA 3B4QA 3G0VA 1AUMA 1OR5A 4BPFA 2LOLA 2XZ0D 2ROQA 1VQ4P 3DS5A 1K8AQ 3CC7P 5HGLA 2JAZA 2KG8A 2LPKA 2FACA 3B5IA 1EMVA 1VQMP 5EJDA 2L6EA 1CEIA 2WPTA 4F37A 1FR2A 1AYIA 1VQPP 2KODA 2JQ4A 5BS2A 1ACPA 2CWOA 3G1GA 2KW2A 3CCEP 1M74A 2VLQA 1DNYA 2L0QA 2AVAA 4PWVB 3CMEP 2XZ1C 2PEOA 2K92A 1Z6MA 3CE7A 1VQ5P 5EW5E 2M8NA 3CC4P 2VSQA 1KD1Q 2AF8A 1YJNP 4U0BA 3CCUP 2N98A 3GKLC 2FADA 3I56P 3OW2O 2L22A 3CXCO 1VHNA 4XRQA 2Z44A 2CGQA 1MZ8A 2KGEA 4PXHB 2PNGA 3EJBA 4XROA 5CZDB 2GZEA 2PEQA 3G28A 3DTJA 2EFJA 2K5XA 2XXMA 2MD9A 2KG9A 4MRTC 4QNBA 1E0HA 3G1IA 1JJ2O 1VQOP 2FVFA 2FHSC 1YJ9P 1YHQP 2N5HA 3DS4A 2EHSA 1KLPA 1HQBA 1GPJA 2GYKA 4BPGA 1GXGA 2MY5A 3G6EP 3EJDA 2JB0A 2GZFA 1M6EX 2M5RA 1N8RQ 1KC8Q 4XFYA 2M8LA 2GDWA 2PENA 2QNWA 3NY7B 1YJWP 2NO8A 5F2NA 2LIWA 2JYGA 2N5IA 1VQNP 4M0IA 2MR7A 5KP6B 2QA4P 1A43A 2MVVA 2K2QA 3CCLP 3CCMP 5F2OA 5HGNA 1YI2P 1L0IA 2VLOA 2FAEA 4U0EA 4IPYA 3GZLA 1Q81Q 1UNKA 2K0YA 2X2BA 4PH0A 4COPA 2KG6A 2LL8A 2JO0A 1KQSO 3G29A 3WBHA 2JGPA 2Z45A 3G21A 1M1KQ 3CD6P 3CMAP 4XFXA 3DS3A 3HYBA 3H47A 3G4SP 3H4EA
chains in the Genus database with same CATH topology
2GYKA 1CEIA 2WPTA 1IMQA 1GXGA 2GZIA 7CEIA 4F37A 1GXHA 1FR2A 1AYIA 1MZ8A 2K0DX 4QKOA 1E0HA 1UJZA 2JB0A 2GZGA 2GZFA 1IMPA 1BXIA 2GZJA 2GZEA 2VLPA 4UHPB 3GKLC 2VLQA 2VLNA 2ERHA 2K5XA 2JAZA 2VLOA 2JBGA 3U43A 3GJNA 1ZNVA 2NO8A 1UNKA 5EW5E 1EMVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GYK A;  1CEI A;  2WPT A;  1IMQ A;  1GXG A;  2GZI A;  7CEI A;  4F37 A;  1GXH A;  1FR2 A;  1AYI A;  1MZ8 A;  2K0D X;  4QKO A;  1E0H A;  1UJZ A;  2JB0 A;  2GZG A;  2GZF A;  1IMP A;  1BXI A;  2GZJ A;  2GZE A;  2VLP A;  4UHP B;  3GKL C;  2VLQ A;  2VLN A;  2ERH A;  2K5X A;  2JAZ A;  2VLO A;  2JBG A;  3U43 A;  3GJN A;  1ZNV A;  2NO8 A;  1UNK A;  5EW5 E;  1EMV A; 
#chains in the Genus database with same CATH topology
 2EIA A;  2N50 A;  2JU2 A;  3CC2 P;  2FVA A;  4H2W C;  2LF4 A;  4H2X C;  2KWL A;  4COC A;  1K9M Q;  3CPW O;  1E6J P;  2CG5 B;  3G71 P;  5F2K A;  2EG5 A;  1VKU A;  2LKI A;  4QKO A;  1K73 Q;  4U0C A;  3P05 A;  3CCJ P;  1RNI A;  2K0D X;  5HVC A;  2GDY A;  2CQ8 A;  4PH1 A;  1VQ9 P;  4DG9 A;  3CCR P;  1Q7Y Q;  1IUQ A;  2K0X A;  2FQ2 A;  2VLN A;  3RG6 C;  3VRL C;  2XT1 A;  1HY8 A;  4H2Y C;  2ONT A;  1VQK P;  2JYL A;  1IMQ A;  3NTE A;  2KGC A;  3HZQ A;  1T8K A;  2XV6 A;  2AFD A;  1YIJ P;  3Q20 A;  1ZMB A;  2LTE A;  2DGY A;  1RO0 A;  1VQ6 P;  5DCK A;  2OAR A;  2LML A;  3LRY A;  1F80 D;  2KOO A;  2GZI A;  2L4B A;  1VQ8 P;  2BUO A;  4U0D A;  2MVU A;  3I55 P;  5HV8 A;  2M8P A;  1IMP A;  2PEK A;  2PEI A;  1NJI Q;  2GDX A;  2OTL P;  2KGA A;  3EJE A;  1DV5 A;  1AF8 A;  1S72 P;  3MGE A;  2AFE A;  1QVG O;  1X3O A;  1ZNV A;  3RG2 A;  2LIU A;  2OTJ P;  7CEI A;  1GXH A;  3M1M A;  5BS1 A;  2GZG A;  3CCS P;  5HGO A;  2Z46 A;  4UHP B;  3DS2 A;  1K30 A;  2PEJ A;  2ERH A;  4HKG A;  1QRJ A;  2N6Z A;  1UJZ A;  1M90 Q;  2FVE A;  1D1D A;  3LMO A;  2KGD A;  2KR5 A;  3G26 A;  1W2B O;  2KOS A;  3CCQ P;  2KOQ A;  3DS1 A;  2L9F A;  4CA3 A;  2K94 A;  1NQ4 A;  2VLP A;  1VQL P;  2E1M A;  2K93 A;  4U0A A;  2BHV A;  4WYM A;  1YIT P;  2JBG A;  4BPH A;  1BAJ A;  5JPA A;  2EHT A;  1VQ7 P;  2FQ0 A;  1M6N A;  4NEO A;  4IZ6 A;  1BXI A;  3CCV P;  3GZM A;  3DPH A;  2KOP A;  4GR2 A;  1QVF O;  3H0D A;  2PY8 A;  4R0M A;  1EIA A;  2QEX P;  4U0F A;  4XFZ A;  3U43 A;  3GJN A;  2CNR A;  2JU1 A;  2PEM A;  2FQ1 A;  1Q86 Q;  3E2D A;  1L0H A;  5HGM A;  5I4T G;  1RO2 A;  2DNW A;  1A8O A;  2GZJ A;  2MR8 A;  2N6Y A;  4GR6 A;  2MF4 A;  1EOQ A;  3DS0 A;  5KP8 B;  5KP7 B;  2P9X A;  1Q82 Q;  2KOR A;  3B4Q A;  3G0V A;  1AUM A;  1OR5 A;  4BPF A;  2LOL A;  2XZ0 D;  2ROQ A;  1VQ4 P;  3DS5 A;  1K8A Q;  3CC7 P;  5HGL A;  2JAZ A;  2KG8 A;  2LPK A;  2FAC A;  3B5I A;  1EMV A;  1VQM P;  5EJD A;  2L6E A;  1CEI A;  2WPT A;  4F37 A;  1FR2 A;  1AYI A;  1VQP P;  2KOD A;  2JQ4 A;  5BS2 A;  1ACP A;  2CWO A;  3G1G A;  2KW2 A;  3CCE P;  1M74 A;  2VLQ A;  1DNY A;  2L0Q A;  2AVA A;  4PWV B;  3CME P;  2XZ1 C;  2PEO A;  2K92 A;  1Z6M A;  3CE7 A;  1VQ5 P;  5EW5 E;  2M8N A;  3CC4 P;  2VSQ A;  1KD1 Q;  2AF8 A;  1YJN P;  4U0B A;  3CCU P;  2N98 A;  3GKL C;  2FAD A;  3I56 P;  3OW2 O;  2L22 A;  3CXC O;  1VHN A;  4XRQ A;  2Z44 A;  2CGQ A;  1MZ8 A;  2KGE A;  4PXH B;  2PNG A;  3EJB A;  4XRO A;  5CZD B;  2GZE A;  2PEQ A;  3G28 A;  3DTJ A;  2EFJ A;  2K5X A;  2XXM A;  2MD9 A;  2KG9 A;  4MRT C;  4QNB A;  1E0H A;  3G1I A;  1JJ2 O;  1VQO P;  2FVF A;  2FHS C;  1YJ9 P;  1YHQ P;  2N5H A;  3DS4 A;  2EHS A;  1KLP A;  1HQB A;  1GPJ A;  2GYK A;  4BPG A;  1GXG A;  2MY5 A;  3G6E P;  3EJD A;  2JB0 A;  2GZF A;  1M6E X;  2M5R A;  1N8R Q;  1KC8 Q;  4XFY A;  2M8L A;  2GDW A;  2PEN A;  2QNW A;  3NY7 B;  1YJW P;  2NO8 A;  5F2N A;  2LIW A;  2JYG A;  2N5I A;  1VQN P;  4M0I A;  2MR7 A;  5KP6 B;  2QA4 P;  1A43 A;  2MVV A;  2K2Q A;  3CCL P;  3CCM P;  5F2O A;  5HGN A;  1YI2 P;  1L0I A;  2VLO A;  2FAE A;  4U0E A;  4IPY A;  3GZL A;  1Q81 Q;  1UNK A;  2K0Y A;  2X2B A;  4PH0 A;  4COP A;  2KG6 A;  2LL8 A;  2JO0 A;  1KQS O;  3G29 A;  3WBH A;  2JGP A;  2Z45 A;  3G21 A;  1M1K Q;  3CD6 P;  3CMA P;  4XFX A;  3DS3 A;  3HYB A;  3H47 A;  3G4S P;  3H4E A; 
#chains in the Genus database with same CATH homology
 2GYK A;  1CEI A;  2WPT A;  1IMQ A;  1GXG A;  2GZI A;  7CEI A;  4F37 A;  1GXH A;  1FR2 A;  1AYI A;  1MZ8 A;  2K0D X;  4QKO A;  1E0H A;  1UJZ A;  2JB0 A;  2GZG A;  2GZF A;  1IMP A;  1BXI A;  2GZJ A;  2GZE A;  2VLP A;  4UHP B;  3GKL C;  2VLQ A;  2VLN A;  2ERH A;  2K5X A;  2JAZ A;  2VLO A;  2JBG A;  3U43 A;  3GJN A;  1ZNV A;  2NO8 A;  1UNK A;  5EW5 E;  1EMV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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