1IMQA

Colicin e9 immunity protein im9, nmr, minimized average structure
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
86
structure length
86
Chain Sequence
MELKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Bacteriocin
molecule keywords IM9
publication title Three-dimensional solution structure and 13C nuclear magnetic resonance assignments of the colicin E9 immunity protein Im9.
pubmed doi rcsb
total genus 19
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 1996-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1imqA00
4UHPB 1MZ8A 2GZEA 1EMVA 2JAZA 2JB0A 3U43A 1ZNVA 2NO8A 1BXIA 3GJNA 1UJZA 2K5XA 1GXHA 2K0DX 1IMQA 2WPTA 4QKOA 1E0HA 2VLNA 5EW5E 7CEIA 2GZIA 2ERHA 2GZJA 1CEIA 1IMPA 3GKLC 2JBGA 1FR2A 2GZFA 2VLOA 1GXGA 4F37A 1UNKA 2VLPA 2VLQA 2GYKA 2GZGA 1AYIA
chains in the Genus database with same CATH superfamily
3CCMP 3HYBA 1K30A 1EOQA 2KOPA 2MY5A 2K0YA 1UJZA 4U0DA 4XROA 2CQ8A 2ONTA 5DCKA 2EG5A 2QNWA 5KP7B 2KG6A 3E2DA 3G71P 2KGCA 3CCSP 4M0IA 2EHTA 3H0DA 4BPHA 2LIWA 4U0BA 2E1MA 1DV5A 2JGPA 3CCVP 3GZMA 3CXCO 2N5IA 3B5IA 4UHPB 2LL8A 5JPAA 1VQOP 4MRTC 5HGLA 4U0EA 2L9FA 2OARA 2AVAA 1ZNVA 1S72P 3G1GA 1VQ5P 3VRLC 5HGMA 2X2BA 2FQ0A 3CMAP 3CCQP 2JO0A 3DS4A 2DNWA 2FVEA 1UNKA 1K73Q 1K8AQ 2CNRA 1AYIA 3Q20A 1VHNA 3DTJA 4PH0A 2PEKA 3NTEA 4GR2A 3CCLP 3DS0A 2FAEA 3MGEA 5F2NA 3CE7A 2MR8A 2DGYA 4XFZA 3DS1A 2BHVA 2FHSC 1RNIA 5EJDA 4H2WC 2JAZA 1KLPA 1QVGO 4PXHB 2LF4A 4CA3A 1Q86Q 1Q7YQ 2M8PA 3LRYA 4R0MA 1YJ9P 2AF8A 3EJEA 1HQBA 1ZMBA 3CMEP 1Q82Q 1M74A 2VLOA 5KP8B 1VQMP 2KWLA 2LKIA 3G1IA 3CCEP 4HKGA 2JYLA 2N6ZA 2JYGA 3NY7B 2K94A 2L0QA 1E6JP 2FQ2A 3G28A 3B4QA 3GKLC 2KW2A 4XFYA 3G4SP 3G26A 2PY8A 1DNYA 1VQ4P 4WYMA 1RO2A 5I4TG 2EHSA 3G29A 1IMQA 1A43A 1ACPA 2Z46A 3H4EA 1IMPA 5CZDB 2L22A 2KOQA 1HY8A 3G6EP 2N6YA 1VQNP 1Q81Q 3DPHA 2GZEA 2KOOA 2EFJA 2QEXP 3I56P 5HV8A 2LMLA 1YITP 4QKOA 3CCUP 7CEIA 1T8KA 5KP6B 2ERHA 1VQKP 3DS2A 1GXGA 4QNBA 4BPFA 2XXMA 2PEQA 3U43A 4IPYA 3CCJP 2CG5B 2PENA 2XT1A 4U0CA 5HGNA 3CD6P 3RG6C 1VQPP 2PEJA 4BPGA 1VQ9P 2MVVA 2GYKA 1VQ6P 1M90Q 2JB0A 5BS1A 3CC2P 5BS2A 3M1MA 3EJBA 4COPA 1YJNP 2PNGA 4XRQA 1EIAA 3CC7P 1MZ8A 2MD9A 1YI2P 3GZLA 1KQSO 5F2KA 2KR5A 2AFDA 2L6EA 4H2YC 1GXHA 2K0DX 2XZ1C 2CWOA 2M5RA 2N50A 2LOLA 1YIJP 3WBHA 1D1DA 1NQ4A 2GZJA 4H2XC 1M1KQ 2K92A 3LMOA 3OW2O 2QA4P 2GZGA 2FADA 4COCA 2AFEA 4NEOA 2XV6A 2FVAA 2WPTA 2OTJP 4PWVB 3H47A 2ROQA 3CCRP 1KD1Q 1NJIQ 2KG8A 2JQ4A 1FR2A 4DG9A 2JU2A 1Z6MA 2FQ1A 1BAJA 3G21A 2KG9A 1KC8Q 5HVCA 2MR7A 2KGDA 1VQ8P 1W2BO 2LPKA 2FACA 3G0VA 2JU1A 2MVUA 4IZ6A 3EJDA 3RG2A 1VQ7P 4U0FA 2VLQA 1X3OA 3I55P 2KGAA 2N98A 1A8OA 2KORA 1AF8A 1YHQP 4U0AA 4GR6A 2VSQA 1OR5A 5EW5E 2K93A 2M8NA 3HZQA 1CEIA 2GDXA 2K2QA 2KODA 3P05A 2BUOA 2NO8A 2Z44A 1L0HA 1VQLP 5HGOA 2LTEA 1K9MQ 1BXIA 2N5HA 3GJNA 2GDWA 2PEIA 2K0XA 1N8RQ 1E0HA 1QVFO 2VLNA 1M6NA 2FVFA 5F2OA 3DS5A 1RO0A 2JBGA 1L0IA 4F37A 2EIAA 1QRJA 1GPJA 1F80D 2VLPA 1IUQA 2LIUA 1M6EX 2PEMA 2Z45A 1EMVA 2MF4A 1AUMA 2CGQA 4XFXA 1VKUA 2KGEA 2K5XA 3CC4P 2PEOA 3DS3A 2GZIA 2XZ0D 1YJWP 2P9XA 1JJ2O 2M8LA 3CPWO 2GDYA 2GZFA 2L4BA 2OTLP 2KOSA 4PH1A
chains in the Genus database with same CATH topology
4UHPB 1MZ8A 2GZEA 1EMVA 2JAZA 2JB0A 3U43A 1ZNVA 2NO8A 1BXIA 3GJNA 1UJZA 2K5XA 1GXHA 2K0DX 1IMQA 2WPTA 4QKOA 1E0HA 2VLNA 5EW5E 7CEIA 2GZIA 2ERHA 2GZJA 1CEIA 1IMPA 3GKLC 2JBGA 1FR2A 2GZFA 2VLOA 1GXGA 4F37A 1UNKA 2VLPA 2VLQA 2GYKA 2GZGA 1AYIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UHP B;  1MZ8 A;  2GZE A;  1EMV A;  2JAZ A;  2JB0 A;  3U43 A;  1ZNV A;  2NO8 A;  1BXI A;  3GJN A;  1UJZ A;  2K5X A;  1GXH A;  2K0D X;  1IMQ A;  2WPT A;  4QKO A;  1E0H A;  2VLN A;  5EW5 E;  7CEI A;  2GZI A;  2ERH A;  2GZJ A;  1CEI A;  1IMP A;  3GKL C;  2JBG A;  1FR2 A;  2GZF A;  2VLO A;  1GXG A;  4F37 A;  1UNK A;  2VLP A;  2VLQ A;  2GYK A;  2GZG A;  1AYI A; 
#chains in the Genus database with same CATH topology
 3CCM P;  3HYB A;  1K30 A;  1EOQ A;  2KOP A;  2MY5 A;  2K0Y A;  1UJZ A;  4U0D A;  4XRO A;  2CQ8 A;  2ONT A;  5DCK A;  2EG5 A;  2QNW A;  5KP7 B;  2KG6 A;  3E2D A;  3G71 P;  2KGC A;  3CCS P;  4M0I A;  2EHT A;  3H0D A;  4BPH A;  2LIW A;  4U0B A;  2E1M A;  1DV5 A;  2JGP A;  3CCV P;  3GZM A;  3CXC O;  2N5I A;  3B5I A;  4UHP B;  2LL8 A;  5JPA A;  1VQO P;  4MRT C;  5HGL A;  4U0E A;  2L9F A;  2OAR A;  2AVA A;  1ZNV A;  1S72 P;  3G1G A;  1VQ5 P;  3VRL C;  5HGM A;  2X2B A;  2FQ0 A;  3CMA P;  3CCQ P;  2JO0 A;  3DS4 A;  2DNW A;  2FVE A;  1UNK A;  1K73 Q;  1K8A Q;  2CNR A;  1AYI A;  3Q20 A;  1VHN A;  3DTJ A;  4PH0 A;  2PEK A;  3NTE A;  4GR2 A;  3CCL P;  3DS0 A;  2FAE A;  3MGE A;  5F2N A;  3CE7 A;  2MR8 A;  2DGY A;  4XFZ A;  3DS1 A;  2BHV A;  2FHS C;  1RNI A;  5EJD A;  4H2W C;  2JAZ A;  1KLP A;  1QVG O;  4PXH B;  2LF4 A;  4CA3 A;  1Q86 Q;  1Q7Y Q;  2M8P A;  3LRY A;  4R0M A;  1YJ9 P;  2AF8 A;  3EJE A;  1HQB A;  1ZMB A;  3CME P;  1Q82 Q;  1M74 A;  2VLO A;  5KP8 B;  1VQM P;  2KWL A;  2LKI A;  3G1I A;  3CCE P;  4HKG A;  2JYL A;  2N6Z A;  2JYG A;  3NY7 B;  2K94 A;  2L0Q A;  1E6J P;  2FQ2 A;  3G28 A;  3B4Q A;  3GKL C;  2KW2 A;  4XFY A;  3G4S P;  3G26 A;  2PY8 A;  1DNY A;  1VQ4 P;  4WYM A;  1RO2 A;  5I4T G;  2EHS A;  3G29 A;  1IMQ A;  1A43 A;  1ACP A;  2Z46 A;  3H4E A;  1IMP A;  5CZD B;  2L22 A;  2KOQ A;  1HY8 A;  3G6E P;  2N6Y A;  1VQN P;  1Q81 Q;  3DPH A;  2GZE A;  2KOO A;  2EFJ A;  2QEX P;  3I56 P;  5HV8 A;  2LML A;  1YIT P;  4QKO A;  3CCU P;  7CEI A;  1T8K A;  5KP6 B;  2ERH A;  1VQK P;  3DS2 A;  1GXG A;  4QNB A;  4BPF A;  2XXM A;  2PEQ A;  3U43 A;  4IPY A;  3CCJ P;  2CG5 B;  2PEN A;  2XT1 A;  4U0C A;  5HGN A;  3CD6 P;  3RG6 C;  1VQP P;  2PEJ A;  4BPG A;  1VQ9 P;  2MVV A;  2GYK A;  1VQ6 P;  1M90 Q;  2JB0 A;  5BS1 A;  3CC2 P;  5BS2 A;  3M1M A;  3EJB A;  4COP A;  1YJN P;  2PNG A;  4XRQ A;  1EIA A;  3CC7 P;  1MZ8 A;  2MD9 A;  1YI2 P;  3GZL A;  1KQS O;  5F2K A;  2KR5 A;  2AFD A;  2L6E A;  4H2Y C;  1GXH A;  2K0D X;  2XZ1 C;  2CWO A;  2M5R A;  2N50 A;  2LOL A;  1YIJ P;  3WBH A;  1D1D A;  1NQ4 A;  2GZJ A;  4H2X C;  1M1K Q;  2K92 A;  3LMO A;  3OW2 O;  2QA4 P;  2GZG A;  2FAD A;  4COC A;  2AFE A;  4NEO A;  2XV6 A;  2FVA A;  2WPT A;  2OTJ P;  4PWV B;  3H47 A;  2ROQ A;  3CCR P;  1KD1 Q;  1NJI Q;  2KG8 A;  2JQ4 A;  1FR2 A;  4DG9 A;  2JU2 A;  1Z6M A;  2FQ1 A;  1BAJ A;  3G21 A;  2KG9 A;  1KC8 Q;  5HVC A;  2MR7 A;  2KGD A;  1VQ8 P;  1W2B O;  2LPK A;  2FAC A;  3G0V A;  2JU1 A;  2MVU A;  4IZ6 A;  3EJD A;  3RG2 A;  1VQ7 P;  4U0F A;  2VLQ A;  1X3O A;  3I55 P;  2KGA A;  2N98 A;  1A8O A;  2KOR A;  1AF8 A;  1YHQ P;  4U0A A;  4GR6 A;  2VSQ A;  1OR5 A;  5EW5 E;  2K93 A;  2M8N A;  3HZQ A;  1CEI A;  2GDX A;  2K2Q A;  2KOD A;  3P05 A;  2BUO A;  2NO8 A;  2Z44 A;  1L0H A;  1VQL P;  5HGO A;  2LTE A;  1K9M Q;  1BXI A;  2N5H A;  3GJN A;  2GDW A;  2PEI A;  2K0X A;  1N8R Q;  1E0H A;  1QVF O;  2VLN A;  1M6N A;  2FVF A;  5F2O A;  3DS5 A;  1RO0 A;  2JBG A;  1L0I A;  4F37 A;  2EIA A;  1QRJ A;  1GPJ A;  1F80 D;  2VLP A;  1IUQ A;  2LIU A;  1M6E X;  2PEM A;  2Z45 A;  1EMV A;  2MF4 A;  1AUM A;  2CGQ A;  4XFX A;  1VKU A;  2KGE A;  2K5X A;  3CC4 P;  2PEO A;  3DS3 A;  2GZI A;  2XZ0 D;  1YJW P;  2P9X A;  1JJ2 O;  2M8L A;  3CPW O;  2GDY A;  2GZF A;  2L4B A;  2OTL P;  2KOS A;  4PH1 A; 
#chains in the Genus database with same CATH homology
 4UHP B;  1MZ8 A;  2GZE A;  1EMV A;  2JAZ A;  2JB0 A;  3U43 A;  1ZNV A;  2NO8 A;  1BXI A;  3GJN A;  1UJZ A;  2K5X A;  1GXH A;  2K0D X;  1IMQ A;  2WPT A;  4QKO A;  1E0H A;  2VLN A;  5EW5 E;  7CEI A;  2GZI A;  2ERH A;  2GZJ A;  1CEI A;  1IMP A;  3GKL C;  2JBG A;  1FR2 A;  2GZF A;  2VLO A;  1GXG A;  4F37 A;  1UNK A;  2VLP A;  2VLQ A;  2GYK A;  2GZG A;  1AYI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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