1IMQA

Colicin e9 immunity protein im9, nmr, minimized average structure
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
86
structure length
86
Chain Sequence
b'MELKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Three-dimensional solution structure and 13C nuclear magnetic resonance assignments of the colicin E9 immunity protein Im9.
pubmed doi rcsb
molecule keywords IM9
molecule tags Bacteriocin
total genus 19
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 1996-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1imqA00
2JB0A 7CEIA 3GKLC 5EW5E 3GJNA 4F37A 1ZNVA 1FR2A 1GXHA 2VLNA 2GZJA 1UNKA 3U43A 1E0HA 2VLQA 2GZGA 2GZFA 2VLPA 1AYIA 2NO8A 2GYKA 2GZIA 2GZEA 2JAZA 2K5XA 1MZ8A 1GXGA 4QKOA 1IMQA 4UHPB 1UJZA 1IMPA 2JBGA 2ERHA 2VLOA 2WPTA 1BXIA 1CEIA 2K0DX 1EMVA
chains in the Genus database with same CATH superfamily
3EJEA 5HGNA 2K0XA 2VSQA 4COCA 2MR8A 3DS2A 1VQNP 2OTJP 4PH0A 3I56P 1YJWP 3DS3A 2ONTA 3H4EA 3WBHA 2JU1A 3LMOA 3CC7P 2K5XA 4U0DA 1GXGA 4U0FA 2AF8A 5HVCA 5HGMA 2N5IA 2P9XA 1NQ4A 1RNIA 2K2QA 2N5HA 4H2YC 1K73Q 4M0IA 2AVAA 1M74A 4PXHB 1VQ4P 1GXHA 2LTEA 2AFEA 4MRTC 3HZQA 2N50A 5HGOA 2LOLA 2L0QA 1D1DA 1VQ7P 2KGCA 3G1IA 1UJZA 3DTJA 1KLPA 3EJDA 4PH1A 2JB0A 3CXCO 1Z6MA 2M8LA 3GJNA 1VQOP 3OW2O 2GZFA 1DV5A 1BAJA 2GZIA 4QKOA 2JYGA 3G4SP 1VQMP 3DS0A 1YI2P 1CEIA 2FQ2A 1K30A 1RO2A 1VQKP 3EJBA 1EIAA 2KOPA 2L22A 2CG5B 2QA4P 2JGPA 2K93A 5I4TG 1NJIQ 2GZEA 2JAZA 2L4BA 2OTLP 5BS1A 4HKGA 4NEOA 2QEXP 2AFDA 4DG9A 3G26A 4XFXA 1K9MQ 5F2KA 2DGYA 2Z46A 2FVFA 1AUMA 1YITP 2CWOA 3G21A 5KP6B 1YJ9P 2N98A 3G29A 2WPTA 1JJ2O 2KGDA 4COPA 1N8RQ 2KGAA 3NY7B 4XRQA 2N6YA 2EHTA 1ZNVA 2XZ0D 1T8KA 2KGEA 3G28A 3CC4P 2L9FA 3CCQP 1AYIA 5DCKA 5HV8A 2XZ1C 3G6EP 1IMQA 1QVGO 1E6JP 3NTEA 1F80D 3CMAP 1VQ8P 3B5IA 2DNWA 5KP7B 1S72P 1GPJA 4H2XC 2JQ4A 2VLPA 1KQSO 2CQ8A 3HYBA 1Q81Q 3CCMP 5KP8B 4GR2A 2PENA 4XFYA 2JU2A 1VHNA 1HY8A 5HGLA 2GDYA 3GKLC 4H2WC 2GDWA 3GZMA 5BS2A 2VLNA 3CCVP 1E0HA 2EG5A 2LF4A 2EFJA 2PY8A 2KG8A 2LL8A 4UHPB 1VKUA 1M90Q 2ROQA 4CA3A 1X3OA 4BPHA 2L6EA 4U0AA 1EMVA 3CCRP 2LKIA 4PWVB 2EIAA 2PEIA 1KC8Q 1FR2A 2KODA 2K0YA 3P05A 5F2OA 2KWLA 1IUQA 2GZGA 2GDXA 1VQ9P 2E1MA 4IPYA 3RG2A 3RG6C 1IMPA 1YIJP 1L0HA 2PEMA 2N6ZA 3CCUP 2FACA 4U0BA 5EW5E 1QVFO 1VQPP 1Q82Q 4F37A 1W2BO 1KD1Q 3CC2P 2KORA 2KR5A 2XV6A 2X2BA 1M1KQ 2KW2A 4GR6A 1OR5A 1ZMBA 3DS1A 3H0DA 3CCLP 4R0MA 2FAEA 3CMEP 1UNKA 2MR7A 5EJDA 1K8AQ 1A43A 1L0IA 1M6EX 1MZ8A 3GZLA 3I55P 2BHVA 2BUOA 3CCJP 4WYMA 2CGQA 2MVUA 1VQLP 2JYLA 3E2DA 3DS4A 5CZDB 3Q20A 2LIUA 2FQ0A 5F2NA 3CPWO 2KOQA 1A8OA 2MD9A 2JBGA 3G1GA 2VLOA 2KOOA 4IZ6A 1VQ5P 1DNYA 2FADA 4BPGA 3G0VA 2K92A 2EHSA 2PEJA 2XXMA 3H47A 2GZJA 3U43A 2LMLA 3CCSP 2MY5A 2NO8A 2OARA 1EOQA 2Z44A 2PEKA 2MVVA 4XROA 2K94A 1BXIA 3CD6P 1QRJA 7CEIA 2MF4A 5JPAA 1Q7YQ 1YJNP 2KG9A 2KG6A 4BPFA 2VLQA 2Z45A 3DPHA 2PNGA 1RO0A 1ACPA 2ERHA 2CNRA 4U0CA 2KOSA 1AF8A 3CE7A 2JO0A 3G71P 4U0EA 2QNWA 2PEQA 2GYKA 3LRYA 3DS5A 2LPKA 4XFZA 2PEOA 2FVAA 3CCEP 1VQ6P 3M1MA 1M6NA 1YHQP 2FHSC 3B4QA 2M5RA 2M8PA 3VRLC 2FVEA 4QNBA 3MGEA 2M8NA 2XT1A 1HQBA 2LIWA 2K0DX 2FQ1A 1Q86Q
chains in the Genus database with same CATH topology
2JB0A 7CEIA 3GKLC 5EW5E 3GJNA 4F37A 1ZNVA 1FR2A 1GXHA 2VLNA 2GZJA 1UNKA 3U43A 1E0HA 2VLQA 2GZGA 2GZFA 2VLPA 1AYIA 2NO8A 2GYKA 2GZIA 2GZEA 2JAZA 2K5XA 1MZ8A 1GXGA 4QKOA 1IMQA 4UHPB 1UJZA 1IMPA 2JBGA 2ERHA 2VLOA 2WPTA 1BXIA 1CEIA 2K0DX 1EMVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JB0 A;  7CEI A;  3GKL C;  5EW5 E;  3GJN A;  4F37 A;  1ZNV A;  1FR2 A;  1GXH A;  2VLN A;  2GZJ A;  1UNK A;  3U43 A;  1E0H A;  2VLQ A;  2GZG A;  2GZF A;  2VLP A;  1AYI A;  2NO8 A;  2GYK A;  2GZI A;  2GZE A;  2JAZ A;  2K5X A;  1MZ8 A;  1GXG A;  4QKO A;  1IMQ A;  4UHP B;  1UJZ A;  1IMP A;  2JBG A;  2ERH A;  2VLO A;  2WPT A;  1BXI A;  1CEI A;  2K0D X;  1EMV A; 
#chains in the Genus database with same CATH topology
 3EJE A;  5HGN A;  2K0X A;  2VSQ A;  4COC A;  2MR8 A;  3DS2 A;  1VQN P;  2OTJ P;  4PH0 A;  3I56 P;  1YJW P;  3DS3 A;  2ONT A;  3H4E A;  3WBH A;  2JU1 A;  3LMO A;  3CC7 P;  2K5X A;  4U0D A;  1GXG A;  4U0F A;  2AF8 A;  5HVC A;  5HGM A;  2N5I A;  2P9X A;  1NQ4 A;  1RNI A;  2K2Q A;  2N5H A;  4H2Y C;  1K73 Q;  4M0I A;  2AVA A;  1M74 A;  4PXH B;  1VQ4 P;  1GXH A;  2LTE A;  2AFE A;  4MRT C;  3HZQ A;  2N50 A;  5HGO A;  2LOL A;  2L0Q A;  1D1D A;  1VQ7 P;  2KGC A;  3G1I A;  1UJZ A;  3DTJ A;  1KLP A;  3EJD A;  4PH1 A;  2JB0 A;  3CXC O;  1Z6M A;  2M8L A;  3GJN A;  1VQO P;  3OW2 O;  2GZF A;  1DV5 A;  1BAJ A;  2GZI A;  4QKO A;  2JYG A;  3G4S P;  1VQM P;  3DS0 A;  1YI2 P;  1CEI A;  2FQ2 A;  1K30 A;  1RO2 A;  1VQK P;  3EJB A;  1EIA A;  2KOP A;  2L22 A;  2CG5 B;  2QA4 P;  2JGP A;  2K93 A;  5I4T G;  1NJI Q;  2GZE A;  2JAZ A;  2L4B A;  2OTL P;  5BS1 A;  4HKG A;  4NEO A;  2QEX P;  2AFD A;  4DG9 A;  3G26 A;  4XFX A;  1K9M Q;  5F2K A;  2DGY A;  2Z46 A;  2FVF A;  1AUM A;  1YIT P;  2CWO A;  3G21 A;  5KP6 B;  1YJ9 P;  2N98 A;  3G29 A;  2WPT A;  1JJ2 O;  2KGD A;  4COP A;  1N8R Q;  2KGA A;  3NY7 B;  4XRQ A;  2N6Y A;  2EHT A;  1ZNV A;  2XZ0 D;  1T8K A;  2KGE A;  3G28 A;  3CC4 P;  2L9F A;  3CCQ P;  1AYI A;  5DCK A;  5HV8 A;  2XZ1 C;  3G6E P;  1IMQ A;  1QVG O;  1E6J P;  3NTE A;  1F80 D;  3CMA P;  1VQ8 P;  3B5I A;  2DNW A;  5KP7 B;  1S72 P;  1GPJ A;  4H2X C;  2JQ4 A;  2VLP A;  1KQS O;  2CQ8 A;  3HYB A;  1Q81 Q;  3CCM P;  5KP8 B;  4GR2 A;  2PEN A;  4XFY A;  2JU2 A;  1VHN A;  1HY8 A;  5HGL A;  2GDY A;  3GKL C;  4H2W C;  2GDW A;  3GZM A;  5BS2 A;  2VLN A;  3CCV P;  1E0H A;  2EG5 A;  2LF4 A;  2EFJ A;  2PY8 A;  2KG8 A;  2LL8 A;  4UHP B;  1VKU A;  1M90 Q;  2ROQ A;  4CA3 A;  1X3O A;  4BPH A;  2L6E A;  4U0A A;  1EMV A;  3CCR P;  2LKI A;  4PWV B;  2EIA A;  2PEI A;  1KC8 Q;  1FR2 A;  2KOD A;  2K0Y A;  3P05 A;  5F2O A;  2KWL A;  1IUQ A;  2GZG A;  2GDX A;  1VQ9 P;  2E1M A;  4IPY A;  3RG2 A;  3RG6 C;  1IMP A;  1YIJ P;  1L0H A;  2PEM A;  2N6Z A;  3CCU P;  2FAC A;  4U0B A;  5EW5 E;  1QVF O;  1VQP P;  1Q82 Q;  4F37 A;  1W2B O;  1KD1 Q;  3CC2 P;  2KOR A;  2KR5 A;  2XV6 A;  2X2B A;  1M1K Q;  2KW2 A;  4GR6 A;  1OR5 A;  1ZMB A;  3DS1 A;  3H0D A;  3CCL P;  4R0M A;  2FAE A;  3CME P;  1UNK A;  2MR7 A;  5EJD A;  1K8A Q;  1A43 A;  1L0I A;  1M6E X;  1MZ8 A;  3GZL A;  3I55 P;  2BHV A;  2BUO A;  3CCJ P;  4WYM A;  2CGQ A;  2MVU A;  1VQL P;  2JYL A;  3E2D A;  3DS4 A;  5CZD B;  3Q20 A;  2LIU A;  2FQ0 A;  5F2N A;  3CPW O;  2KOQ A;  1A8O A;  2MD9 A;  2JBG A;  3G1G A;  2VLO A;  2KOO A;  4IZ6 A;  1VQ5 P;  1DNY A;  2FAD A;  4BPG A;  3G0V A;  2K92 A;  2EHS A;  2PEJ A;  2XXM A;  3H47 A;  2GZJ A;  3U43 A;  2LML A;  3CCS P;  2MY5 A;  2NO8 A;  2OAR A;  1EOQ A;  2Z44 A;  2PEK A;  2MVV A;  4XRO A;  2K94 A;  1BXI A;  3CD6 P;  1QRJ A;  7CEI A;  2MF4 A;  5JPA A;  1Q7Y Q;  1YJN P;  2KG9 A;  2KG6 A;  4BPF A;  2VLQ A;  2Z45 A;  3DPH A;  2PNG A;  1RO0 A;  1ACP A;  2ERH A;  2CNR A;  4U0C A;  2KOS A;  1AF8 A;  3CE7 A;  2JO0 A;  3G71 P;  4U0E A;  2QNW A;  2PEQ A;  2GYK A;  3LRY A;  3DS5 A;  2LPK A;  4XFZ A;  2PEO A;  2FVA A;  3CCE P;  1VQ6 P;  3M1M A;  1M6N A;  1YHQ P;  2FHS C;  3B4Q A;  2M5R A;  2M8P A;  3VRL C;  2FVE A;  4QNB A;  3MGE A;  2M8N A;  2XT1 A;  1HQB A;  2LIW A;  2K0D X;  2FQ1 A;  1Q86 Q; 
#chains in the Genus database with same CATH homology
 2JB0 A;  7CEI A;  3GKL C;  5EW5 E;  3GJN A;  4F37 A;  1ZNV A;  1FR2 A;  1GXH A;  2VLN A;  2GZJ A;  1UNK A;  3U43 A;  1E0H A;  2VLQ A;  2GZG A;  2GZF A;  2VLP A;  1AYI A;  2NO8 A;  2GYK A;  2GZI A;  2GZE A;  2JAZ A;  2K5X A;  1MZ8 A;  1GXG A;  4QKO A;  1IMQ A;  4UHP B;  1UJZ A;  1IMP A;  2JBG A;  2ERH A;  2VLO A;  2WPT A;  1BXI A;  1CEI A;  2K0D X;  1EMV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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