1IMQA

Colicin e9 immunity protein im9, nmr, minimized average structure
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
86
structure length
86
Chain Sequence
b'MELKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords IM9
publication title Three-dimensional solution structure and 13C nuclear magnetic resonance assignments of the colicin E9 immunity protein Im9.
pubmed doi rcsb
molecule tags Bacteriocin
total genus 19
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 1996-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1imqA00
1IMPA 2GZFA 2GZEA 2VLQA 3GKLC 5EW5E 2JAZA 2GZIA 2JBGA 2VLPA 1CEIA 2GZJA 1BXIA 2VLNA 1UNKA 1GXGA 2ERHA 1UJZA 2VLOA 2GZGA 1AYIA 1E0HA 1GXHA 2WPTA 4UHPB 2JB0A 3U43A 2K0DX 7CEIA 1ZNVA 4QKOA 2K5XA 2NO8A 1EMVA 1FR2A 1MZ8A 1IMQA 2GYKA 3GJNA 4F37A
chains in the Genus database with same CATH superfamily
3VRLC 3CCRP 2GZEA 3GKLC 2KOSA 3Q20A 2FQ0A 1KC8Q 1W2BO 2FQ1A 2QNWA 3G1GA 2GZGA 1AYIA 1DNYA 2N5HA 1GPJA 2ROQA 1YITP 2LIUA 1QRJA 4U0EA 2GDXA 3DS3A 1HQBA 1M1KQ 1VQMP 2XZ1C 2ONTA 2VLOA 3I56P 2FAEA 1AUMA 1AF8A 4GR2A 2JYLA 2KG8A 1VQ7P 1S72P 1NQ4A 2FHSC 1IUQA 3CMEP 2GZIA 2GZJA 2MY5A 5HGMA 2KR5A 5I4TG 3CCUP 5KP6B 3CE7A 5HGNA 4PXHB 2CG5B 3H0DA 3DPHA 3CMAP 1GXHA 3G29A 3MGEA 2DNWA 2K5XA 1K73Q 2KG9A 5BS2A 1IMQA 3H47A 2BHVA 2MR8A 4U0CA 2M8NA 1YJ9P 3CC2P 5HVCA 2L0QA 2LF4A 1Q82Q 1OR5A 2XT1A 4UHPB 1YJWP 7CEIA 1Q7YQ 2OTJP 2LL8A 1M6NA 2N98A 2CNRA 2AFDA 3GZMA 2K93A 1GXGA 3CCSP 1BAJA 2MR7A 3B4QA 1VKUA 4XRQA 2LTEA 3NTEA 1FR2A 4XFXA 2K94A 2PEMA 1M90Q 3CC7P 1DV5A 2N50A 1UJZA 2KGCA 3CCQP 2PEIA 2K92A 2M8LA 5HGLA 1EIAA 4PWVB 2GYKA 1QVFO 4F37A 4NEOA 1VQ8P 2M5RA 2VLQA 5EW5E 2MVVA 3G71P 4R0MA 2ERHA 2KOOA 1VQ9P 4U0FA 2K0DX 1X3OA 5CZDB 1ACPA 3M1MA 1YIJP 1VQNP 3LRYA 3OW2O 2KODA 1IMPA 2L6EA 1YHQP 2VLPA 5F2OA 3RG6C 3DS4A 2XV6A 2FADA 3LMOA 1ZMBA 2JB0A 4QKOA 1Z6MA 2JO0A 3GJNA 2Z46A 2EIAA 3DS1A 2JU1A 5HGOA 3EJDA 2CWOA 1K30A 1RO2A 3G21A 5JPAA 5BS1A 2KWLA 1E0HA 4BPGA 1ZNVA 3GZLA 1RO0A 3CPWO 2FVEA 2KW2A 3HZQA 5EJDA 3B5IA 4PH0A 2QEXP 2PEKA 1VQPP 3CXCO 1F80D 2MF4A 2VLNA 3EJBA 2PEJA 2AF8A 3G6EP 2JU2A 4BPFA 2LMLA 4XROA 2LOLA 1L0HA 2PEQA 3U43A 2E1MA 2NO8A 5DCKA 1A43A 4IZ6A 2KGAA 2LIWA 3DS0A 2KG6A 2PY8A 2PNGA 3WBHA 4H2WC 1YJNP 1YI2P 2K0YA 2MD9A 2CQ8A 1KLPA 4U0AA 2OARA 3G0VA 4CA3A 2XXMA 3CCLP 1D1DA 4H2XC 4QNBA 2X2BA 4DG9A 2LPKA 3P05A 1E6JP 2JAZA 2JBGA 1EOQA 1VQ6P 1VQ4P 3G1IA 2QA4P 3CCEP 2EFJA 2Z44A 5F2NA 3DS5A 4MRTC 5KP8B 2VSQA 4XFZA 4BPHA 2CGQA 2K0XA 2EHTA 2MVUA 3CCVP 2AVAA 2L4BA 1RNIA 2EG5A 2P9XA 3EJEA 2DGYA 4COCA 3DS2A 3CCMP 2PENA 5F2KA 2LKIA 1CEIA 1KQSO 2OTLP 3HYBA 4H2YC 1M6EX 2L9FA 3G28A 1Q81Q 1K8AQ 1VHNA 2XZ0D 1A8OA 1EMVA 4HKGA 3NY7B 4PH1A 2GZFA 1Q86Q 3RG2A 3CC4P 1VQOP 2FQ2A 1BXIA 1N8RQ 2FACA 1VQLP 2JYGA 5KP7B 2FVAA 3DTJA 2WPTA 2EHSA 2K2QA 2AFEA 2N5IA 1QVGO 4WYMA 1M74A 3G26A 2N6YA 1NJIQ 1VQ5P 2L22A 4M0IA 1VQKP 2KOQA 2FVFA 1K9MQ 2JGPA 1L0IA 2JQ4A 2KORA 5HV8A 2PEOA 1T8KA 2BUOA 2M8PA 1MZ8A 2KGEA 4U0BA 4GR6A 1KD1Q 4U0DA 3H4EA 4COPA 2N6ZA 1HY8A 2GDWA 3I55P 2KOPA 1UNKA 3CD6P 4XFYA 3G4SP 2KGDA 3CCJP 2Z45A 4IPYA 3E2DA 1JJ2O 2GDYA
chains in the Genus database with same CATH topology
1IMPA 2GZFA 2GZEA 2VLQA 3GKLC 5EW5E 2JAZA 2GZIA 2JBGA 2VLPA 1CEIA 2GZJA 1BXIA 2VLNA 1UNKA 1GXGA 2ERHA 1UJZA 2VLOA 2GZGA 1AYIA 1E0HA 1GXHA 2WPTA 4UHPB 2JB0A 3U43A 2K0DX 7CEIA 1ZNVA 4QKOA 2K5XA 2NO8A 1EMVA 1FR2A 1MZ8A 1IMQA 2GYKA 3GJNA 4F37A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IMP A;  2GZF A;  2GZE A;  2VLQ A;  3GKL C;  5EW5 E;  2JAZ A;  2GZI A;  2JBG A;  2VLP A;  1CEI A;  2GZJ A;  1BXI A;  2VLN A;  1UNK A;  1GXG A;  2ERH A;  1UJZ A;  2VLO A;  2GZG A;  1AYI A;  1E0H A;  1GXH A;  2WPT A;  4UHP B;  2JB0 A;  3U43 A;  2K0D X;  7CEI A;  1ZNV A;  4QKO A;  2K5X A;  2NO8 A;  1EMV A;  1FR2 A;  1MZ8 A;  1IMQ A;  2GYK A;  3GJN A;  4F37 A; 
#chains in the Genus database with same CATH topology
 3VRL C;  3CCR P;  2GZE A;  3GKL C;  2KOS A;  3Q20 A;  2FQ0 A;  1KC8 Q;  1W2B O;  2FQ1 A;  2QNW A;  3G1G A;  2GZG A;  1AYI A;  1DNY A;  2N5H A;  1GPJ A;  2ROQ A;  1YIT P;  2LIU A;  1QRJ A;  4U0E A;  2GDX A;  3DS3 A;  1HQB A;  1M1K Q;  1VQM P;  2XZ1 C;  2ONT A;  2VLO A;  3I56 P;  2FAE A;  1AUM A;  1AF8 A;  4GR2 A;  2JYL A;  2KG8 A;  1VQ7 P;  1S72 P;  1NQ4 A;  2FHS C;  1IUQ A;  3CME P;  2GZI A;  2GZJ A;  2MY5 A;  5HGM A;  2KR5 A;  5I4T G;  3CCU P;  5KP6 B;  3CE7 A;  5HGN A;  4PXH B;  2CG5 B;  3H0D A;  3DPH A;  3CMA P;  1GXH A;  3G29 A;  3MGE A;  2DNW A;  2K5X A;  1K73 Q;  2KG9 A;  5BS2 A;  1IMQ A;  3H47 A;  2BHV A;  2MR8 A;  4U0C A;  2M8N A;  1YJ9 P;  3CC2 P;  5HVC A;  2L0Q A;  2LF4 A;  1Q82 Q;  1OR5 A;  2XT1 A;  4UHP B;  1YJW P;  7CEI A;  1Q7Y Q;  2OTJ P;  2LL8 A;  1M6N A;  2N98 A;  2CNR A;  2AFD A;  3GZM A;  2K93 A;  1GXG A;  3CCS P;  1BAJ A;  2MR7 A;  3B4Q A;  1VKU A;  4XRQ A;  2LTE A;  3NTE A;  1FR2 A;  4XFX A;  2K94 A;  2PEM A;  1M90 Q;  3CC7 P;  1DV5 A;  2N50 A;  1UJZ A;  2KGC A;  3CCQ P;  2PEI A;  2K92 A;  2M8L A;  5HGL A;  1EIA A;  4PWV B;  2GYK A;  1QVF O;  4F37 A;  4NEO A;  1VQ8 P;  2M5R A;  2VLQ A;  5EW5 E;  2MVV A;  3G71 P;  4R0M A;  2ERH A;  2KOO A;  1VQ9 P;  4U0F A;  2K0D X;  1X3O A;  5CZD B;  1ACP A;  3M1M A;  1YIJ P;  1VQN P;  3LRY A;  3OW2 O;  2KOD A;  1IMP A;  2L6E A;  1YHQ P;  2VLP A;  5F2O A;  3RG6 C;  3DS4 A;  2XV6 A;  2FAD A;  3LMO A;  1ZMB A;  2JB0 A;  4QKO A;  1Z6M A;  2JO0 A;  3GJN A;  2Z46 A;  2EIA A;  3DS1 A;  2JU1 A;  5HGO A;  3EJD A;  2CWO A;  1K30 A;  1RO2 A;  3G21 A;  5JPA A;  5BS1 A;  2KWL A;  1E0H A;  4BPG A;  1ZNV A;  3GZL A;  1RO0 A;  3CPW O;  2FVE A;  2KW2 A;  3HZQ A;  5EJD A;  3B5I A;  4PH0 A;  2QEX P;  2PEK A;  1VQP P;  3CXC O;  1F80 D;  2MF4 A;  2VLN A;  3EJB A;  2PEJ A;  2AF8 A;  3G6E P;  2JU2 A;  4BPF A;  2LML A;  4XRO A;  2LOL A;  1L0H A;  2PEQ A;  3U43 A;  2E1M A;  2NO8 A;  5DCK A;  1A43 A;  4IZ6 A;  2KGA A;  2LIW A;  3DS0 A;  2KG6 A;  2PY8 A;  2PNG A;  3WBH A;  4H2W C;  1YJN P;  1YI2 P;  2K0Y A;  2MD9 A;  2CQ8 A;  1KLP A;  4U0A A;  2OAR A;  3G0V A;  4CA3 A;  2XXM A;  3CCL P;  1D1D A;  4H2X C;  4QNB A;  2X2B A;  4DG9 A;  2LPK A;  3P05 A;  1E6J P;  2JAZ A;  2JBG A;  1EOQ A;  1VQ6 P;  1VQ4 P;  3G1I A;  2QA4 P;  3CCE P;  2EFJ A;  2Z44 A;  5F2N A;  3DS5 A;  4MRT C;  5KP8 B;  2VSQ A;  4XFZ A;  4BPH A;  2CGQ A;  2K0X A;  2EHT A;  2MVU A;  3CCV P;  2AVA A;  2L4B A;  1RNI A;  2EG5 A;  2P9X A;  3EJE A;  2DGY A;  4COC A;  3DS2 A;  3CCM P;  2PEN A;  5F2K A;  2LKI A;  1CEI A;  1KQS O;  2OTL P;  3HYB A;  4H2Y C;  1M6E X;  2L9F A;  3G28 A;  1Q81 Q;  1K8A Q;  1VHN A;  2XZ0 D;  1A8O A;  1EMV A;  4HKG A;  3NY7 B;  4PH1 A;  2GZF A;  1Q86 Q;  3RG2 A;  3CC4 P;  1VQO P;  2FQ2 A;  1BXI A;  1N8R Q;  2FAC A;  1VQL P;  2JYG A;  5KP7 B;  2FVA A;  3DTJ A;  2WPT A;  2EHS A;  2K2Q A;  2AFE A;  2N5I A;  1QVG O;  4WYM A;  1M74 A;  3G26 A;  2N6Y A;  1NJI Q;  1VQ5 P;  2L22 A;  4M0I A;  1VQK P;  2KOQ A;  2FVF A;  1K9M Q;  2JGP A;  1L0I A;  2JQ4 A;  2KOR A;  5HV8 A;  2PEO A;  1T8K A;  2BUO A;  2M8P A;  1MZ8 A;  2KGE A;  4U0B A;  4GR6 A;  1KD1 Q;  4U0D A;  3H4E A;  4COP A;  2N6Z A;  1HY8 A;  2GDW A;  3I55 P;  2KOP A;  1UNK A;  3CD6 P;  4XFY A;  3G4S P;  2KGD A;  3CCJ P;  2Z45 A;  4IPY A;  3E2D A;  1JJ2 O;  2GDY A; 
#chains in the Genus database with same CATH homology
 1IMP A;  2GZF A;  2GZE A;  2VLQ A;  3GKL C;  5EW5 E;  2JAZ A;  2GZI A;  2JBG A;  2VLP A;  1CEI A;  2GZJ A;  1BXI A;  2VLN A;  1UNK A;  1GXG A;  2ERH A;  1UJZ A;  2VLO A;  2GZG A;  1AYI A;  1E0H A;  1GXH A;  2WPT A;  4UHP B;  2JB0 A;  3U43 A;  2K0D X;  7CEI A;  1ZNV A;  4QKO A;  2K5X A;  2NO8 A;  1EMV A;  1FR2 A;  1MZ8 A;  1IMQ A;  2GYK A;  3GJN A;  4F37 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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