1BXIA

Crystal structure of the escherichia coli colicin e9 dnase domain with its cognate immunity protein im9
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
83
structure length
83
Chain Sequence
LKASISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVQQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords PROTEIN (COLICIN E9 IMMUNITY PROTEIN)
publication title Crystal Structure of the E.Coli Colicin E9 DNase Domain With its Cognate Immunity Protein Im9
pubmed rcsb
source organism Escherichia coli
total genus 28
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 1998-10-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1bxiA00
1IMPA 3U43A 1EMVA 1E0HA 1BXIA 2JAZA 2WPTA 4F37A 1AYIA 2JBGA 3GJNA 1UJZA 1FR2A 7CEIA 2NO8A 1IMQA 1CEIA 2GZGA 5EW5E 1GXHA 2K0DX 4QKOA 1MZ8A 2GZFA 1ZNVA 4UHPB 2VLPA 2ERHA 2JB0A 3GKLC 2K5XA 2GZIA 2VLNA 2VLQA 2VLOA 1UNKA 2GYKA 1GXGA 2GZEA 2GZJA
chains in the Genus database with same CATH superfamily
3NY7B 2EHSA 3U43A 1RO2A 1VQ8P 2KG9A 4DG9A 2K0XA 2QNWA 2WPTA 4U0CA 1QRJA 3EJEA 4XFYA 3I56P 2KGAA 2LOLA 4HKGA 1ZMBA 2K2QA 2FQ1A 5I4TG 4U0AA 2FVAA 3M1MA 2NO8A 3I55P 3LRYA 3OW2O 3CC4P 2PEIA 1E6JP 3DS4A 2CGQA 1Q7YQ 4GR2A 3DS0A 2GYKA 2M8NA 2GZEA 1Z6MA 3CCJP 2Z46A 3RG2A 4F37A 2OTJP 2ROQA 2PENA 2CQ8A 2FHSC 2GZGA 3B4QA 4QNBA 3CC2P 2JB0A 4XROA 2N50A 5HGNA 4U0DA 2QEXP 2GZJA 1YJWP 4PH0A 1BAJA 2CG5B 3HZQA 2MD9A 1KLPA 3G28A 1KD1Q 1Q86Q 4U0FA 2K0DX 1VQ9P 1YITP 1RO0A 1VQNP 1Q81Q 2OARA 3CCEP 2KWLA 2VLOA 5DCKA 1UNKA 3H47A 2GDWA 2JO0A 4BPHA 1VKUA 1EMVA 2P9XA 1E0HA 1KQSO 2JYLA 2XV6A 2PEKA 2MVVA 2PEJA 3CCQP 1M74A 4IZ6A 2M5RA 3VRLC 2KG6A 1IMQA 5EW5E 5KP7B 1T8KA 5CZDB 1K8AQ 2JGPA 3G1GA 3G29A 3GKLC 2LKIA 4M0IA 1M1KQ 2AFEA 3NTEA 4H2XC 1VQ6P 4XRQA 2EIAA 3LMOA 2AFDA 3E2DA 1S72P 2L9FA 2KGDA 2M8LA 3MGEA 2L6EA 1KC8Q 1UJZA 2M8PA 3G71P 2MY5A 1GXHA 1ACPA 4IPYA 1K30A 4XFXA 1VQ7P 2JQ4A 5HV8A 3GZLA 1IMPA 1EIAA 3B5IA 3EJDA 3CXCO 1FR2A 3Q20A 4QKOA 1VQ4P 2FVFA 3H0DA 2E1MA 4R0MA 2K92A 2L0QA 3G26A 5HGMA 2KR5A 4XFZA 1VHNA 1K73Q 2LL8A 1N8RQ 1F80D 2XXMA 3CCVP 2CWOA 7CEIA 3DS3A 5BS1A 1MZ8A 2PEMA 1ZNVA 4UHPB 1RNIA 2Z44A 2KG8A 2K94A 2N98A 5F2NA 2LIWA 1A43A 2EFJA 5KP8B 2JU2A 1Q82Q 2LPKA 4BPFA 3DS2A 1AF8A 2MR8A 2ERHA 2VLNA 1GXGA 4MRTC 3DTJA 5HGOA 4COCA 2N6YA 5EJDA 5F2KA 2FQ2A 2KORA 5KP6B 2X2BA 1EOQA 3CMAP 2KGEA 2AVAA 1VQ5P 1NQ4A 1VQOP 2Z45A 4H2YC 2DNWA 2LIUA 1OR5A 1M6NA 3CMEP 2KOPA 2BUOA 3DS5A 4PXHB 3H4EA 1K9MQ 2XZ1C 4CA3A 1D1DA 1VQLP 2GDXA 3CE7A 1VQPP 3CCUP 2PNGA 4BPGA 4GR6A 2AF8A 1HY8A 1M6EX 2BHVA 5F2OA 2L22A 3CPWO 1CEIA 1YHQP 5JPAA 3DPHA 3G4SP 2GZFA 3P05A 3CCRP 2K5XA 2N5HA 4NEOA 2FAEA 2KGCA 3G1IA 2VLQA 2JU1A 1AUMA 2JYGA 2JAZA 1W2BO 2QA4P 2FACA 4COPA 2CNRA 2XZ0D 2VLPA 3GZMA 1M90Q 2EG5A 3RG6C 1YJ9P 4H2WC 4U0BA 3G21A 2XT1A 2EHTA 2KOOA 3GJNA 2MF4A 1A8OA 2FADA 1VQMP 2PY8A 2PEQA 2OTLP 2DGYA 3DS1A 2LMLA 1QVGO 1QVFO 2KOQA 4U0EA 2FVEA 2KW2A 1JJ2O 1DV5A 3CC7P 3CCLP 2KODA 5BS2A 2PEOA 1GPJA 2VSQA 1YI2P 3CCMP 1NJIQ 1DNYA 2K93A 3CCSP 2N5IA 5HVCA 2GDYA 1HQBA 1X3OA 3G6EP 1VQKP 4WYMA 2GZIA 1L0IA 2KOSA 1BXIA 2MR7A 4PH1A 1IUQA 2K0YA 2N6ZA 1AYIA 2JBGA 2FQ0A 5HGLA 2MVUA 1YJNP 3CD6P 1L0HA 3HYBA 2ONTA 2L4BA 2LF4A 2LTEA 4PWVB 3EJBA 3WBHA 1YIJP 3G0VA
chains in the Genus database with same CATH topology
1IMPA 3U43A 1EMVA 1E0HA 1BXIA 2JAZA 2WPTA 4F37A 1AYIA 2JBGA 3GJNA 1UJZA 1FR2A 7CEIA 2NO8A 1IMQA 1CEIA 2GZGA 5EW5E 1GXHA 2K0DX 4QKOA 1MZ8A 2GZFA 1ZNVA 4UHPB 2VLPA 2ERHA 2JB0A 3GKLC 2K5XA 2GZIA 2VLNA 2VLQA 2VLOA 1UNKA 2GYKA 1GXGA 2GZEA 2GZJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IMP A;  3U43 A;  1EMV A;  1E0H A;  1BXI A;  2JAZ A;  2WPT A;  4F37 A;  1AYI A;  2JBG A;  3GJN A;  1UJZ A;  1FR2 A;  7CEI A;  2NO8 A;  1IMQ A;  1CEI A;  2GZG A;  5EW5 E;  1GXH A;  2K0D X;  4QKO A;  1MZ8 A;  2GZF A;  1ZNV A;  4UHP B;  2VLP A;  2ERH A;  2JB0 A;  3GKL C;  2K5X A;  2GZI A;  2VLN A;  2VLQ A;  2VLO A;  1UNK A;  2GYK A;  1GXG A;  2GZE A;  2GZJ A; 
#chains in the Genus database with same CATH topology
 3NY7 B;  2EHS A;  3U43 A;  1RO2 A;  1VQ8 P;  2KG9 A;  4DG9 A;  2K0X A;  2QNW A;  2WPT A;  4U0C A;  1QRJ A;  3EJE A;  4XFY A;  3I56 P;  2KGA A;  2LOL A;  4HKG A;  1ZMB A;  2K2Q A;  2FQ1 A;  5I4T G;  4U0A A;  2FVA A;  3M1M A;  2NO8 A;  3I55 P;  3LRY A;  3OW2 O;  3CC4 P;  2PEI A;  1E6J P;  3DS4 A;  2CGQ A;  1Q7Y Q;  4GR2 A;  3DS0 A;  2GYK A;  2M8N A;  2GZE A;  1Z6M A;  3CCJ P;  2Z46 A;  3RG2 A;  4F37 A;  2OTJ P;  2ROQ A;  2PEN A;  2CQ8 A;  2FHS C;  2GZG A;  3B4Q A;  4QNB A;  3CC2 P;  2JB0 A;  4XRO A;  2N50 A;  5HGN A;  4U0D A;  2QEX P;  2GZJ A;  1YJW P;  4PH0 A;  1BAJ A;  2CG5 B;  3HZQ A;  2MD9 A;  1KLP A;  3G28 A;  1KD1 Q;  1Q86 Q;  4U0F A;  2K0D X;  1VQ9 P;  1YIT P;  1RO0 A;  1VQN P;  1Q81 Q;  2OAR A;  3CCE P;  2KWL A;  2VLO A;  5DCK A;  1UNK A;  3H47 A;  2GDW A;  2JO0 A;  4BPH A;  1VKU A;  1EMV A;  2P9X A;  1E0H A;  1KQS O;  2JYL A;  2XV6 A;  2PEK A;  2MVV A;  2PEJ A;  3CCQ P;  1M74 A;  4IZ6 A;  2M5R A;  3VRL C;  2KG6 A;  1IMQ A;  5EW5 E;  5KP7 B;  1T8K A;  5CZD B;  1K8A Q;  2JGP A;  3G1G A;  3G29 A;  3GKL C;  2LKI A;  4M0I A;  1M1K Q;  2AFE A;  3NTE A;  4H2X C;  1VQ6 P;  4XRQ A;  2EIA A;  3LMO A;  2AFD A;  3E2D A;  1S72 P;  2L9F A;  2KGD A;  2M8L A;  3MGE A;  2L6E A;  1KC8 Q;  1UJZ A;  2M8P A;  3G71 P;  2MY5 A;  1GXH A;  1ACP A;  4IPY A;  1K30 A;  4XFX A;  1VQ7 P;  2JQ4 A;  5HV8 A;  3GZL A;  1IMP A;  1EIA A;  3B5I A;  3EJD A;  3CXC O;  1FR2 A;  3Q20 A;  4QKO A;  1VQ4 P;  2FVF A;  3H0D A;  2E1M A;  4R0M A;  2K92 A;  2L0Q A;  3G26 A;  5HGM A;  2KR5 A;  4XFZ A;  1VHN A;  1K73 Q;  2LL8 A;  1N8R Q;  1F80 D;  2XXM A;  3CCV P;  2CWO A;  7CEI A;  3DS3 A;  5BS1 A;  1MZ8 A;  2PEM A;  1ZNV A;  4UHP B;  1RNI A;  2Z44 A;  2KG8 A;  2K94 A;  2N98 A;  5F2N A;  2LIW A;  1A43 A;  2EFJ A;  5KP8 B;  2JU2 A;  1Q82 Q;  2LPK A;  4BPF A;  3DS2 A;  1AF8 A;  2MR8 A;  2ERH A;  2VLN A;  1GXG A;  4MRT C;  3DTJ A;  5HGO A;  4COC A;  2N6Y A;  5EJD A;  5F2K A;  2FQ2 A;  2KOR A;  5KP6 B;  2X2B A;  1EOQ A;  3CMA P;  2KGE A;  2AVA A;  1VQ5 P;  1NQ4 A;  1VQO P;  2Z45 A;  4H2Y C;  2DNW A;  2LIU A;  1OR5 A;  1M6N A;  3CME P;  2KOP A;  2BUO A;  3DS5 A;  4PXH B;  3H4E A;  1K9M Q;  2XZ1 C;  4CA3 A;  1D1D A;  1VQL P;  2GDX A;  3CE7 A;  1VQP P;  3CCU P;  2PNG A;  4BPG A;  4GR6 A;  2AF8 A;  1HY8 A;  1M6E X;  2BHV A;  5F2O A;  2L22 A;  3CPW O;  1CEI A;  1YHQ P;  5JPA A;  3DPH A;  3G4S P;  2GZF A;  3P05 A;  3CCR P;  2K5X A;  2N5H A;  4NEO A;  2FAE A;  2KGC A;  3G1I A;  2VLQ A;  2JU1 A;  1AUM A;  2JYG A;  2JAZ A;  1W2B O;  2QA4 P;  2FAC A;  4COP A;  2CNR A;  2XZ0 D;  2VLP A;  3GZM A;  1M90 Q;  2EG5 A;  3RG6 C;  1YJ9 P;  4H2W C;  4U0B A;  3G21 A;  2XT1 A;  2EHT A;  2KOO A;  3GJN A;  2MF4 A;  1A8O A;  2FAD A;  1VQM P;  2PY8 A;  2PEQ A;  2OTL P;  2DGY A;  3DS1 A;  2LML A;  1QVG O;  1QVF O;  2KOQ A;  4U0E A;  2FVE A;  2KW2 A;  1JJ2 O;  1DV5 A;  3CC7 P;  3CCL P;  2KOD A;  5BS2 A;  2PEO A;  1GPJ A;  2VSQ A;  1YI2 P;  3CCM P;  1NJI Q;  1DNY A;  2K93 A;  3CCS P;  2N5I A;  5HVC A;  2GDY A;  1HQB A;  1X3O A;  3G6E P;  1VQK P;  4WYM A;  2GZI A;  1L0I A;  2KOS A;  1BXI A;  2MR7 A;  4PH1 A;  1IUQ A;  2K0Y A;  2N6Z A;  1AYI A;  2JBG A;  2FQ0 A;  5HGL A;  2MVU A;  1YJN P;  3CD6 P;  1L0H A;  3HYB A;  2ONT A;  2L4B A;  2LF4 A;  2LTE A;  4PWV B;  3EJB A;  3WBH A;  1YIJ P;  3G0V A; 
#chains in the Genus database with same CATH homology
 1IMP A;  3U43 A;  1EMV A;  1E0H A;  1BXI A;  2JAZ A;  2WPT A;  4F37 A;  1AYI A;  2JBG A;  3GJN A;  1UJZ A;  1FR2 A;  7CEI A;  2NO8 A;  1IMQ A;  1CEI A;  2GZG A;  5EW5 E;  1GXH A;  2K0D X;  4QKO A;  1MZ8 A;  2GZF A;  1ZNV A;  4UHP B;  2VLP A;  2ERH A;  2JB0 A;  3GKL C;  2K5X A;  2GZI A;  2VLN A;  2VLQ A;  2VLO A;  1UNK A;  2GYK A;  1GXG A;  2GZE A;  2GZJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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