The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
31
|
sequence length |
90
|
structure length |
90
|
Chain Sequence |
MDIKNNLSDYTESEFLEIIEEFFKNKSGLKGSELEKRMDKLVKHFEEVTSHPRKSGVIFHPKPGFETPEGIVKEVKEWRAANGLPGFKAG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
LARGE COMPONENT OF PYOCIN AP41
|
| publication title |
Structures of the Ultra-High Affinity Protein-Protein Complexes of Pyocins S2 and Ap41 and Their Cognate Immunity Proteins from Pseudomonas Aeruginosa
pubmed doi rcsb |
| source organism |
Pseudomonas aeruginosa pao1
|
| molecule tags |
Hydrolase
|
| total genus |
31
|
| structure length |
90
|
| sequence length |
90
|
| chains with identical sequence |
D, F, H
|
| ec nomenclature | |
| pdb deposition date | 2015-03-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF01320 | Colicin_Pyocin | Colicin immunity protein / pyocin immunity protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A | Colicin E immunity protein |
#chains in the Genus database with same CATH superfamily 1IMQ A; 1AYI A; 2VLO A; 2JB0 A; 1CEI A; 2GZG A; 2JAZ A; 1UJZ A; 3U43 A; 7CEI A; 2JBG A; 2GYK A; 1UNK A; 3GJN A; 2VLP A; 3GKL C; 4F37 A; 1ZNV A; 4QKO A; 2GZI A; 1BXI A; 2VLN A; 2GZF A; 1FR2 A; 2ERH A; 1GXH A; 4UHP B; 2GZJ A; 2VLQ A; 1E0H A; 1EMV A; 2K0D X; 1IMP A; 2WPT A; 2GZE A; 1GXG A; 2K5X A; 2NO8 A; 1MZ8 A; 5EW5 E; #chains in the Genus database with same CATH topology 2KOO A; 1K73 Q; 2LIU A; 4R0M A; 3OW2 O; 2EHT A; 4U0C A; 2KGA A; 4PH0 A; 3DS2 A; 3HZQ A; 2LOL A; 4DG9 A; 5HGN A; 1VQ8 P; 2FAE A; 4XRQ A; 1Q86 Q; 2FVA A; 2FQ1 A; 1UJZ A; 2JGP A; 2CWO A; 1ACP A; 2FVF A; 2K2Q A; 3CCJ P; 2OAR A; 2XZ0 D; 2PNG A; 4H2X C; 1K8A Q; 4CA3 A; 2PY8 A; 2PEM A; 3U43 A; 2E1M A; 2M8L A; 2EG5 A; 3I55 P; 2EHS A; 2GZI A; 4PXH B; 2KOD A; 1VQP P; 1BXI A; 3H4E A; 1Q7Y Q; 4NEO A; 3CME P; 3MGE A; 1E0H A; 2AFE A; 3I56 P; 3CCQ P; 7CEI A; 3H47 A; 1ZMB A; 3EJD A; 1N8R Q; 1YJW P; 2JYL A; 1YIJ P; 4BPH A; 2DGY A; 3LRY A; 2N50 A; 5KP8 B; 3G28 A; 2PEQ A; 1K30 A; 1KD1 Q; 1M6N A; 3DS5 A; 5F2K A; 2KGC A; 1A43 A; 5F2N A; 3CCL P; 1L0H A; 2VLO A; 3CMA P; 2XT1 A; 3CCS P; 2VLP A; 2K0Y A; 2N6Y A; 3CCE P; 2VLN A; 1YHQ P; 1RNI A; 2KWL A; 3E2D A; 1L0I A; 2MVU A; 2VLQ A; 2Z44 A; 1KC8 Q; 2WPT A; 2Z46 A; 5HGL A; 1K9M Q; 3EJB A; 3CCU P; 4PWV B; 4QNB A; 2MVV A; 2VSQ A; 2DNW A; 1FR2 A; 2GZF A; 1NQ4 A; 4GR2 A; 1OR5 A; 2XXM A; 2AF8 A; 2P9X A; 2K93 A; 2M5R A; 4UHP B; 2N5H A; 4XFZ A; 1KQS O; 2K5X A; 1EOQ A; 3CCM P; 2KOQ A; 4HKG A; 2GDY A; 2QNW A; 1GPJ A; 2K94 A; 3G6E P; 2JO0 A; 3RG2 A; 2M8N A; 1W2B O; 1GXH A; 2N5I A; 1Z6M A; 3CD6 P; 4H2W C; 2KG8 A; 2PEJ A; 1E6J P; 3CC7 P; 1S72 P; 2PEI A; 2BUO A; 1IMQ A; 1M74 A; 3WBH A; 4MRT C; 3CE7 A; 2L9F A; 2Z45 A; 2JBG A; 4M0I A; 2LIW A; 2PEN A; 1VQ4 P; 3DS0 A; 5KP7 B; 4WYM A; 2L0Q A; 2XV6 A; 1VQ5 P; 3EJE A; 2ROQ A; 1EIA A; 3GZM A; 2KOR A; 2GZE A; 1MZ8 A; 2KGE A; 1AYI A; 2PEO A; 2EIA A; 2JAZ A; 4IZ6 A; 2AFD A; 2GYK A; 3DS4 A; 2K0X A; 1VQ9 P; 2X2B A; 3B5I A; 1D1D A; 3DPH A; 5HGM A; 3CCR P; 1Q81 Q; 5HVC A; 2MY5 A; 1VKU A; 3HYB A; 2JU1 A; 3G21 A; 3DS3 A; 2EFJ A; 1YI2 P; 2N6Z A; 1HQB A; 1UNK A; 2JYG A; 2KGD A; 1IUQ A; 2JU2 A; 1AF8 A; 4U0E A; 5F2O A; 3RG6 C; 4COC A; 2FQ0 A; 3H0D A; 1RO0 A; 4XFY A; 3G1I A; 2LL8 A; 5EW5 E; 1CEI A; 1KLP A; 2ONT A; 1YJ9 P; 1VQM P; 2N98 A; 2L6E A; 2QEX P; 2LTE A; 1AUM A; 3GZL A; 3NTE A; 2CNR A; 4COP A; 1VQO P; 1M1K Q; 3P05 A; 4U0A A; 2KW2 A; 3CC4 P; 3M1M A; 3G26 A; 2KG6 A; 3CCV P; 1DV5 A; 5HGO A; 5KP6 B; 2MD9 A; 2GZG A; 2CQ8 A; 4XFX A; 3CC2 P; 1ZNV A; 1VQK P; 3CXC O; 1QVG O; 3LMO A; 2FHS C; 2CG5 B; 5EJD A; 1X3O A; 1YJN P; 1VQN P; 4GR6 A; 4U0B A; 2L22 A; 1EMV A; 1NJI Q; 2FAD A; 2NO8 A; 2AVA A; 3DS1 A; 1HY8 A; 1F80 D; 2CGQ A; 4BPF A; 3G29 A; 1VQ6 P; 5JPA A; 3GJN A; 4XRO A; 1M6E X; 2QA4 P; 2JQ4 A; 2L4B A; 2LKI A; 2K92 A; 3G1G A; 1IMP A; 5BS1 A; 5CZD B; 2PEK A; 3VRL C; 4IPY A; 2JB0 A; 1VHN A; 3GKL C; 4H2Y C; 2GDX A; 4F37 A; 4QKO A; 1A8O A; 2M8P A; 5BS2 A; 1VQL P; 3G71 P; 2LPK A; 1QVF O; 2OTJ P; 2KR5 A; 1VQ7 P; 5DCK A; 1Q82 Q; 2FQ2 A; 3B4Q A; 1YIT P; 2KOP A; 2MR8 A; 1M90 Q; 1BAJ A; 4U0D A; 3CPW O; 4U0F A; 2XZ1 C; 5I4T G; 2FAC A; 4PH1 A; 2K0D X; 2FVE A; 2OTL P; 3G0V A; 2BHV A; 2GDW A; 3G4S P; 1JJ2 O; 1QRJ A; 1DNY A; 5HV8 A; 1RO2 A; 2ERH A; 3NY7 B; 2MR7 A; 2LML A; 2MF4 A; 2KOS A; 2KG9 A; 2GZJ A; 3DTJ A; 3Q20 A; 1T8K A; 1GXG A; 2LF4 A; 4BPG A; #chains in the Genus database with same CATH homology 1IMQ A; 1AYI A; 2VLO A; 2JB0 A; 1CEI A; 2GZG A; 2JAZ A; 1UJZ A; 3U43 A; 7CEI A; 2JBG A; 2GYK A; 1UNK A; 3GJN A; 2VLP A; 3GKL C; 4F37 A; 1ZNV A; 4QKO A; 2GZI A; 1BXI A; 2VLN A; 2GZF A; 1FR2 A; 2ERH A; 1GXH A; 4UHP B; 2GZJ A; 2VLQ A; 1E0H A; 1EMV A; 2K0D X; 1IMP A; 2WPT A; 2GZE A; 1GXG A; 2K5X A; 2NO8 A; 1MZ8 A; 5EW5 E;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
