1GXHA

Colicin e8 dnase immunity protein: im8
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
85
structure length
85
Chain Sequence
MELKNSISDYTETEFKKIIEDIINCEGDEKKQDDNLEHFISVTEHPSGSDLIYYPEGNNDGSPEAVIKEIKEWRAANGKSGFKQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Inhibitor
source organism Escherichia coli
publication title Non-Cognate Protein-Protein Interaction: The NMR Structure of the Colicin E8 Inhibitor Protein Im8 and its Interaction with the DNase Domain of Colicin E9
rcsb
molecule keywords COLICIN E8 IMMUNITY PROTEIN
total genus 32
structure length 85
sequence length 85
ec nomenclature
pdb deposition date 2002-04-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1gxhA00
2VLNA 1AYIA 2GYKA 2GZJA 2VLOA 2VLPA 1UJZA 2GZFA 2JB0A 1IMPA 1GXHA 4F37A 2GZEA 2ERHA 1MZ8A 7CEIA 1GXGA 3U43A 2GZGA 1BXIA 1IMQA 1FR2A 2WPTA 3GJNA 2JAZA 2K0DX 2K5XA 2VLQA 4QKOA 1E0HA 3GKLC 2GZIA 5EW5E 1CEIA 1EMVA 2JBGA 2NO8A 4UHPB 1ZNVA 1UNKA
chains in the Genus database with same CATH superfamily
2M8LA 3CCLP 1YI2P 5EJDA 1UJZA 1NJIQ 1GXHA 1KQSO 1E0HA 2KORA 3DS2A 2L6EA 1VQMP 1QRJA 3CC4P 5CZDB 2QNWA 1QVFO 3M1MA 2QEXP 1L0IA 2CNRA 3CC7P 1DNYA 1CEIA 2JGPA 4IZ6A 1A43A 1E6JP 2EG5A 4GR2A 2LL8A 2KW2A 3CPWO 1OR5A 2KGCA 5HGLA 1W2BO 1RO2A 3G1GA 4COCA 5KP6B 2OTJP 4H2YC 1Q82Q 3EJDA 3LMOA 2JO0A 1BAJA 3CCRP 2K0YA 2LIWA 2EFJA 1RNIA 1IMPA 2K92A 2GDXA 1VQKP 1GXGA 2GZGA 2CQ8A 2FADA 3CMEP 3EJBA 3I56P 2N5IA 1VQNP 5HGOA 2MVUA 4BPFA 2LTEA 2N50A 5KP7B 4U0CA 3CCSP 1M6NA 2KGDA 2KG9A 2XZ0D 2KG8A 3WBHA 2MF4A 3RG2A 3DPHA 1RO0A 2PEKA 3CCUP 4U0DA 2Z45A 3E2DA 3CCQP 2KG6A 1VHNA 2JBGA 4UHPB 1ZNVA 2X2BA 1DV5A 1K8AQ 2K94A 5HV8A 2GZJA 1Q7YQ 1YJWP 3OW2O 1M90Q 4XFZA 7CEIA 2CGQA 2FQ1A 2GDWA 3DTJA 2PEJA 2KOQA 3DS3A 1Z6MA 4H2XC 3GZLA 3EJEA 1YJNP 4HKGA 2KOOA 1F80D 3G71P 1VKUA 2VLPA 5I4TG 2M5RA 2CWOA 3I55P 3CCVP 4QNBA 2CG5B 2XT1A 3DS0A 2GZEA 3GZMA 1KLPA 1FR2A 3GJNA 3P05A 3HZQA 1X3OA 3G6EP 4DG9A 2OTLP 4M0IA 5F2KA 1VQPP 1ZMBA 2LMLA 2FVFA 1KC8Q 2VLOA 3G29A 2LKIA 3B4QA 2P9XA 3B5IA 2PEQA 2DNWA 1BXIA 5HGNA 2K2QA 2PEIA 2FVAA 1VQ9P 2LPKA 3G0VA 4BPGA 2XXMA 2N6ZA 1VQLP 3VRLC 2EHSA 1VQ6P 1YIJP 1T8KA 2FHSC 1M6EX 2Z44A 1VQ4P 3Q20A 2M8PA 2AF8A 2L0QA 2K5XA 1KD1Q 3DS5A 2M8NA 1K73Q 2MVVA 2NO8A 5JPAA 1S72P 2KOPA 4CA3A 5KP8B 2JB0A 2KGEA 4XROA 2K0XA 2QA4P 2FAEA 2ERHA 1VQOP 3U43A 2E1MA 2LF4A 3RG6C 3CC2P 2KODA 2MR8A 2L9FA 2L22A 4H2WC 5F2OA 2MY5A 2Z46A 2JYGA 4QKOA 2AVAA 2N6YA 2XZ1C 2K93A 2LOLA 2GZFA 2MR7A 1HQBA 1Q86Q 2VSQA 4U0EA 4COPA 2PY8A 2XV6A 1AF8A 2JU2A 4IPYA 1AUMA 5DCKA 1QVGO 3H4EA 1N8RQ 1VQ5P 4PH1A 1YITP 2VLNA 4NEOA 5BS2A 1M1KQ 3CE7A 2N98A 4F37A 3CD6P 2FQ2A 1D1DA 4WYMA 2FVEA 2WPTA 2KWLA 2PENA 2GZIA 1JJ2O 2L4BA 3GKLC 1NQ4A 2AFEA 2KR5A 2MD9A 5HGMA 1EOQA 2FACA 5HVCA 1ACPA 5BS1A 4PH0A 1GPJA 2LIUA 3H47A 3NTEA 1IMQA 2AFDA 2EIAA 2PNGA 3DS4A 2K0DX 2VLQA 3MGEA 3H0DA 3DS1A 3G28A 1HY8A 2PEMA 3LRYA 3CCMP 2KOSA 1M74A 1VQ7P 3HYBA 4BPHA 2BHVA 3G4SP 2KGAA 1K30A 1MZ8A 2GDYA 1YJ9P 3G21A 1IUQA 1YHQP 5EW5E 4MRTC 2ROQA 2ONTA 1UNKA 2JYLA 1L0HA 2JQ4A 3CCJP 2OARA 4PWVB 4R0MA 3CXCO 2JU1A 3CMAP 2EHTA 2DGYA 4U0BA 2FQ0A 4GR6A 1EIAA 1AYIA 4U0FA 3G26A 2N5HA 2GYKA 5F2NA 4XRQA 4U0AA 1Q81Q 4PXHB 4XFXA 2PEOA 3G1IA 2JAZA 3NY7B 4XFYA 1VQ8P 2BUOA 1K9MQ 1EMVA 1A8OA 3CCEP
chains in the Genus database with same CATH topology
2VLNA 1AYIA 2GYKA 2GZJA 2VLOA 2VLPA 1UJZA 2GZFA 2JB0A 1IMPA 1GXHA 4F37A 2GZEA 2ERHA 1MZ8A 7CEIA 1GXGA 3U43A 2GZGA 1BXIA 1IMQA 1FR2A 2WPTA 3GJNA 2JAZA 2K0DX 2K5XA 2VLQA 4QKOA 1E0HA 3GKLC 2GZIA 5EW5E 1CEIA 1EMVA 2JBGA 2NO8A 4UHPB 1ZNVA 1UNKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VLN A;  1AYI A;  2GYK A;  2GZJ A;  2VLO A;  2VLP A;  1UJZ A;  2GZF A;  2JB0 A;  1IMP A;  1GXH A;  4F37 A;  2GZE A;  2ERH A;  1MZ8 A;  7CEI A;  1GXG A;  3U43 A;  2GZG A;  1BXI A;  1IMQ A;  1FR2 A;  2WPT A;  3GJN A;  2JAZ A;  2K0D X;  2K5X A;  2VLQ A;  4QKO A;  1E0H A;  3GKL C;  2GZI A;  5EW5 E;  1CEI A;  1EMV A;  2JBG A;  2NO8 A;  4UHP B;  1ZNV A;  1UNK A; 
#chains in the Genus database with same CATH topology
 2M8L A;  3CCL P;  1YI2 P;  5EJD A;  1UJZ A;  1NJI Q;  1GXH A;  1KQS O;  1E0H A;  2KOR A;  3DS2 A;  2L6E A;  1VQM P;  1QRJ A;  3CC4 P;  5CZD B;  2QNW A;  1QVF O;  3M1M A;  2QEX P;  1L0I A;  2CNR A;  3CC7 P;  1DNY A;  1CEI A;  2JGP A;  4IZ6 A;  1A43 A;  1E6J P;  2EG5 A;  4GR2 A;  2LL8 A;  2KW2 A;  3CPW O;  1OR5 A;  2KGC A;  5HGL A;  1W2B O;  1RO2 A;  3G1G A;  4COC A;  5KP6 B;  2OTJ P;  4H2Y C;  1Q82 Q;  3EJD A;  3LMO A;  2JO0 A;  1BAJ A;  3CCR P;  2K0Y A;  2LIW A;  2EFJ A;  1RNI A;  1IMP A;  2K92 A;  2GDX A;  1VQK P;  1GXG A;  2GZG A;  2CQ8 A;  2FAD A;  3CME P;  3EJB A;  3I56 P;  2N5I A;  1VQN P;  5HGO A;  2MVU A;  4BPF A;  2LTE A;  2N50 A;  5KP7 B;  4U0C A;  3CCS P;  1M6N A;  2KGD A;  2KG9 A;  2XZ0 D;  2KG8 A;  3WBH A;  2MF4 A;  3RG2 A;  3DPH A;  1RO0 A;  2PEK A;  3CCU P;  4U0D A;  2Z45 A;  3E2D A;  3CCQ P;  2KG6 A;  1VHN A;  2JBG A;  4UHP B;  1ZNV A;  2X2B A;  1DV5 A;  1K8A Q;  2K94 A;  5HV8 A;  2GZJ A;  1Q7Y Q;  1YJW P;  3OW2 O;  1M90 Q;  4XFZ A;  7CEI A;  2CGQ A;  2FQ1 A;  2GDW A;  3DTJ A;  2PEJ A;  2KOQ A;  3DS3 A;  1Z6M A;  4H2X C;  3GZL A;  3EJE A;  1YJN P;  4HKG A;  2KOO A;  1F80 D;  3G71 P;  1VKU A;  2VLP A;  5I4T G;  2M5R A;  2CWO A;  3I55 P;  3CCV P;  4QNB A;  2CG5 B;  2XT1 A;  3DS0 A;  2GZE A;  3GZM A;  1KLP A;  1FR2 A;  3GJN A;  3P05 A;  3HZQ A;  1X3O A;  3G6E P;  4DG9 A;  2OTL P;  4M0I A;  5F2K A;  1VQP P;  1ZMB A;  2LML A;  2FVF A;  1KC8 Q;  2VLO A;  3G29 A;  2LKI A;  3B4Q A;  2P9X A;  3B5I A;  2PEQ A;  2DNW A;  1BXI A;  5HGN A;  2K2Q A;  2PEI A;  2FVA A;  1VQ9 P;  2LPK A;  3G0V A;  4BPG A;  2XXM A;  2N6Z A;  1VQL P;  3VRL C;  2EHS A;  1VQ6 P;  1YIJ P;  1T8K A;  2FHS C;  1M6E X;  2Z44 A;  1VQ4 P;  3Q20 A;  2M8P A;  2AF8 A;  2L0Q A;  2K5X A;  1KD1 Q;  3DS5 A;  2M8N A;  1K73 Q;  2MVV A;  2NO8 A;  5JPA A;  1S72 P;  2KOP A;  4CA3 A;  5KP8 B;  2JB0 A;  2KGE A;  4XRO A;  2K0X A;  2QA4 P;  2FAE A;  2ERH A;  1VQO P;  3U43 A;  2E1M A;  2LF4 A;  3RG6 C;  3CC2 P;  2KOD A;  2MR8 A;  2L9F A;  2L22 A;  4H2W C;  5F2O A;  2MY5 A;  2Z46 A;  2JYG A;  4QKO A;  2AVA A;  2N6Y A;  2XZ1 C;  2K93 A;  2LOL A;  2GZF A;  2MR7 A;  1HQB A;  1Q86 Q;  2VSQ A;  4U0E A;  4COP A;  2PY8 A;  2XV6 A;  1AF8 A;  2JU2 A;  4IPY A;  1AUM A;  5DCK A;  1QVG O;  3H4E A;  1N8R Q;  1VQ5 P;  4PH1 A;  1YIT P;  2VLN A;  4NEO A;  5BS2 A;  1M1K Q;  3CE7 A;  2N98 A;  4F37 A;  3CD6 P;  2FQ2 A;  1D1D A;  4WYM A;  2FVE A;  2WPT A;  2KWL A;  2PEN A;  2GZI A;  1JJ2 O;  2L4B A;  3GKL C;  1NQ4 A;  2AFE A;  2KR5 A;  2MD9 A;  5HGM A;  1EOQ A;  2FAC A;  5HVC A;  1ACP A;  5BS1 A;  4PH0 A;  1GPJ A;  2LIU A;  3H47 A;  3NTE A;  1IMQ A;  2AFD A;  2EIA A;  2PNG A;  3DS4 A;  2K0D X;  2VLQ A;  3MGE A;  3H0D A;  3DS1 A;  3G28 A;  1HY8 A;  2PEM A;  3LRY A;  3CCM P;  2KOS A;  1M74 A;  1VQ7 P;  3HYB A;  4BPH A;  2BHV A;  3G4S P;  2KGA A;  1K30 A;  1MZ8 A;  2GDY A;  1YJ9 P;  3G21 A;  1IUQ A;  1YHQ P;  5EW5 E;  4MRT C;  2ROQ A;  2ONT A;  1UNK A;  2JYL A;  1L0H A;  2JQ4 A;  3CCJ P;  2OAR A;  4PWV B;  4R0M A;  3CXC O;  2JU1 A;  3CMA P;  2EHT A;  2DGY A;  4U0B A;  2FQ0 A;  4GR6 A;  1EIA A;  1AYI A;  4U0F A;  3G26 A;  2N5H A;  2GYK A;  5F2N A;  4XRQ A;  4U0A A;  1Q81 Q;  4PXH B;  4XFX A;  2PEO A;  3G1I A;  2JAZ A;  3NY7 B;  4XFY A;  1VQ8 P;  2BUO A;  1K9M Q;  1EMV A;  1A8O A;  3CCE P; 
#chains in the Genus database with same CATH homology
 2VLN A;  1AYI A;  2GYK A;  2GZJ A;  2VLO A;  2VLP A;  1UJZ A;  2GZF A;  2JB0 A;  1IMP A;  1GXH A;  4F37 A;  2GZE A;  2ERH A;  1MZ8 A;  7CEI A;  1GXG A;  3U43 A;  2GZG A;  1BXI A;  1IMQ A;  1FR2 A;  2WPT A;  3GJN A;  2JAZ A;  2K0D X;  2K5X A;  2VLQ A;  4QKO A;  1E0H A;  3GKL C;  2GZI A;  5EW5 E;  1CEI A;  1EMV A;  2JBG A;  2NO8 A;  4UHP B;  1ZNV A;  1UNK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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