1GXHA

Colicin e8 dnase immunity protein: im8
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
85
structure length
85
Chain Sequence
b'MELKNSISDYTETEFKKIIEDIINCEGDEKKQDDNLEHFISVTEHPSGSDLIYYPEGNNDGSPEAVIKEIKEWRAANGKSGFKQG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Non-Cognate Protein-Protein Interaction: The NMR Structure of the Colicin E8 Inhibitor Protein Im8 and its Interaction with the DNase Domain of Colicin E9
rcsb
molecule keywords COLICIN E8 IMMUNITY PROTEIN
source organism Escherichia coli
molecule tags Inhibitor
total genus 32
structure length 85
sequence length 85
ec nomenclature
pdb deposition date 2002-04-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1gxhA00
2GZJA 1UJZA 1E0HA 1MZ8A 4UHPB 2GZEA 2NO8A 5EW5E 1FR2A 2JAZA 2GYKA 2VLQA 2VLPA 2WPTA 2GZFA 2K0DX 1EMVA 1UNKA 1IMQA 1GXGA 2VLOA 2JBGA 4QKOA 1GXHA 2ERHA 1AYIA 2JB0A 4F37A 1BXIA 2GZIA 3GKLC 2K5XA 7CEIA 3GJNA 1CEIA 2VLNA 1IMPA 3U43A 2GZGA 1ZNVA
chains in the Genus database with same CATH superfamily
2N6ZA 2KG6A 1Q86Q 3CE7A 2M5RA 2GDXA 2L4BA 4GR6A 3DS1A 1QRJA 3LMOA 3DTJA 1IUQA 3CPWO 3CCEP 1A8OA 2JO0A 2P9XA 1VQ7P 2JU2A 2KGCA 2FAEA 1Q7YQ 2LTEA 1T8KA 2L9FA 2LIWA 2JGPA 1HQBA 2VLPA 2KG9A 4IZ6A 5HGNA 2K0DX 2XZ1C 2AFDA 2FACA 4MRTC 3B4QA 1AYIA 3HZQA 4U0EA 2EFJA 3GZLA 2AF8A 2MF4A 1M90Q 1F80D 2QA4P 2PEJA 1ZNVA 2JQ4A 1AUMA 1L0IA 4NEOA 5EW5E 2VLQA 4H2YC 1UNKA 2VLOA 3DS4A 3CCRP 2DGYA 1GXHA 3DPHA 2JYLA 2ONTA 2OARA 1AF8A 1VQ9P 4CA3A 3CD6P 3NY7B 2XXMA 3CCLP 2N6YA 3G28A 2PNGA 1FR2A 1GXGA 3CMEP 2FVAA 2OTLP 3CCVP 3MGEA 7CEIA 1YI2P 1VQKP 3H4EA 1K73Q 2Z44A 2LF4A 5KP8B 1VQLP 5HVCA 2KOSA 2FADA 2Z45A 4M0IA 1VQ6P 2QEXP 5KP6B 2L0QA 4IPYA 1YITP 2GYKA 1DNYA 2EHSA 2KODA 3CCUP 2GZIA 3NTEA 2E1MA 2N5HA 1E6JP 2K0YA 4DG9A 4BPHA 2LOLA 1E0HA 2GZEA 4COCA 2Z46A 1Z6MA 2GZFA 5JPAA 2LL8A 2KW2A 2ERHA 4HKGA 2M8NA 1VQMP 3I56P 3GKLC 1KC8Q 3G26A 1D1DA 2MY5A 3CCSP 1K30A 2K93A 2OTJP 2ROQA 2XV6A 1EIAA 3DS3A 3CC4P 3G6EP 2DNWA 3G4SP 4U0AA 1QVGO 1KLPA 2MVUA 4XRQA 1VQ4P 3EJEA 4UHPB 2KWLA 2LIUA 2KOQA 2L6EA 1IMQA 2KG8A 2PEMA 5CZDB 2FVEA 1YJNP 2N98A 1K8AQ 2N5IA 1X3OA 4U0BA 2VSQA 3E2DA 1A43A 2LKIA 4GR2A 1UJZA 2PEQA 3Q20A 5HGOA 3LRYA 2XZ0D 2WPTA 5DCKA 2MVVA 1OR5A 3G1IA 1M1KQ 1BAJA 2LPKA 1EOQA 1K9MQ 3EJDA 3RG6C 2JU1A 4XFXA 2KGAA 2KORA 3P05A 2AVAA 2CG5B 3CMAP 2CQ8A 2K94A 4U0FA 2GZJA 2CGQA 1W2BO 3G29A 2KGDA 1KQSO 1EMVA 4U0DA 4COPA 5HGMA 4QKOA 4F37A 1RNIA 2K0XA 2PENA 3DS0A 1IMPA 1S72P 2N50A 4PXHB 3G1GA 1YJWP 1VQ5P 1RO0A 3I55P 2EIAA 1VQPP 3HYBA 1VHNA 1HY8A 3WBHA 1VQOP 3CC2P 3CXCO 2BHVA 5BS1A 1M6EX 2JYGA 1Q82Q 4PH0A 1L0HA 2JBGA 4BPFA 2AFEA 3G0VA 1BXIA 3H0DA 2MD9A 4H2WC 2KR5A 5F2NA 1NQ4A 2LMLA 2X2BA 2EHTA 2FHSC 1N8RQ 2KGEA 2KOOA 1M74A 5KP7B 2CWOA 4PWVB 3CCJP 3GZMA 1GPJA 1Q81Q 4BPGA 3DS5A 5BS2A 1YHQP 4WYMA 1YIJP 2GDYA 2JAZA 1M6NA 3VRLC 1JJ2O 1ZMBA 3DS2A 4PH1A 1VQNP 4XROA 5F2OA 2VLNA 1KD1Q 3U43A 1RO2A 2GZGA 2XT1A 3G71P 3CCMP 2FQ0A 2FQ2A 2K92A 2NO8A 5HGLA 2PY8A 4U0CA 3B5IA 2QNWA 2M8PA 3M1MA 3RG2A 2EG5A 4R0MA 4XFZA 1YJ9P 3CC7P 2BUOA 3G21A 2K5XA 4QNBA 1CEIA 3H47A 1ACPA 1VQ8P 2MR8A 1MZ8A 3EJBA 2L22A 5EJDA 1QVFO 1VKUA 5HV8A 2FVFA 3OW2O 2FQ1A 2PEIA 2K2QA 2M8LA 2PEOA 4XFYA 5F2KA 5I4TG 2JB0A 3CCQP 2KOPA 2CNRA 2PEKA 1NJIQ 2MR7A 3GJNA 4H2XC 1DV5A 2GDWA
chains in the Genus database with same CATH topology
2GZJA 1UJZA 1E0HA 1MZ8A 4UHPB 2GZEA 2NO8A 5EW5E 1FR2A 2JAZA 2GYKA 2VLQA 2VLPA 2WPTA 2GZFA 2K0DX 1EMVA 1UNKA 1IMQA 1GXGA 2VLOA 2JBGA 4QKOA 1GXHA 2ERHA 1AYIA 2JB0A 4F37A 1BXIA 2GZIA 3GKLC 2K5XA 7CEIA 3GJNA 1CEIA 2VLNA 1IMPA 3U43A 2GZGA 1ZNVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GZJ A;  1UJZ A;  1E0H A;  1MZ8 A;  4UHP B;  2GZE A;  2NO8 A;  5EW5 E;  1FR2 A;  2JAZ A;  2GYK A;  2VLQ A;  2VLP A;  2WPT A;  2GZF A;  2K0D X;  1EMV A;  1UNK A;  1IMQ A;  1GXG A;  2VLO A;  2JBG A;  4QKO A;  1GXH A;  2ERH A;  1AYI A;  2JB0 A;  4F37 A;  1BXI A;  2GZI A;  3GKL C;  2K5X A;  7CEI A;  3GJN A;  1CEI A;  2VLN A;  1IMP A;  3U43 A;  2GZG A;  1ZNV A; 
#chains in the Genus database with same CATH topology
 2N6Z A;  2KG6 A;  1Q86 Q;  3CE7 A;  2M5R A;  2GDX A;  2L4B A;  4GR6 A;  3DS1 A;  1QRJ A;  3LMO A;  3DTJ A;  1IUQ A;  3CPW O;  3CCE P;  1A8O A;  2JO0 A;  2P9X A;  1VQ7 P;  2JU2 A;  2KGC A;  2FAE A;  1Q7Y Q;  2LTE A;  1T8K A;  2L9F A;  2LIW A;  2JGP A;  1HQB A;  2VLP A;  2KG9 A;  4IZ6 A;  5HGN A;  2K0D X;  2XZ1 C;  2AFD A;  2FAC A;  4MRT C;  3B4Q A;  1AYI A;  3HZQ A;  4U0E A;  2EFJ A;  3GZL A;  2AF8 A;  2MF4 A;  1M90 Q;  1F80 D;  2QA4 P;  2PEJ A;  1ZNV A;  2JQ4 A;  1AUM A;  1L0I A;  4NEO A;  5EW5 E;  2VLQ A;  4H2Y C;  1UNK A;  2VLO A;  3DS4 A;  3CCR P;  2DGY A;  1GXH A;  3DPH A;  2JYL A;  2ONT A;  2OAR A;  1AF8 A;  1VQ9 P;  4CA3 A;  3CD6 P;  3NY7 B;  2XXM A;  3CCL P;  2N6Y A;  3G28 A;  2PNG A;  1FR2 A;  1GXG A;  3CME P;  2FVA A;  2OTL P;  3CCV P;  3MGE A;  7CEI A;  1YI2 P;  1VQK P;  3H4E A;  1K73 Q;  2Z44 A;  2LF4 A;  5KP8 B;  1VQL P;  5HVC A;  2KOS A;  2FAD A;  2Z45 A;  4M0I A;  1VQ6 P;  2QEX P;  5KP6 B;  2L0Q A;  4IPY A;  1YIT P;  2GYK A;  1DNY A;  2EHS A;  2KOD A;  3CCU P;  2GZI A;  3NTE A;  2E1M A;  2N5H A;  1E6J P;  2K0Y A;  4DG9 A;  4BPH A;  2LOL A;  1E0H A;  2GZE A;  4COC A;  2Z46 A;  1Z6M A;  2GZF A;  5JPA A;  2LL8 A;  2KW2 A;  2ERH A;  4HKG A;  2M8N A;  1VQM P;  3I56 P;  3GKL C;  1KC8 Q;  3G26 A;  1D1D A;  2MY5 A;  3CCS P;  1K30 A;  2K93 A;  2OTJ P;  2ROQ A;  2XV6 A;  1EIA A;  3DS3 A;  3CC4 P;  3G6E P;  2DNW A;  3G4S P;  4U0A A;  1QVG O;  1KLP A;  2MVU A;  4XRQ A;  1VQ4 P;  3EJE A;  4UHP B;  2KWL A;  2LIU A;  2KOQ A;  2L6E A;  1IMQ A;  2KG8 A;  2PEM A;  5CZD B;  2FVE A;  1YJN P;  2N98 A;  1K8A Q;  2N5I A;  1X3O A;  4U0B A;  2VSQ A;  3E2D A;  1A43 A;  2LKI A;  4GR2 A;  1UJZ A;  2PEQ A;  3Q20 A;  5HGO A;  3LRY A;  2XZ0 D;  2WPT A;  5DCK A;  2MVV A;  1OR5 A;  3G1I A;  1M1K Q;  1BAJ A;  2LPK A;  1EOQ A;  1K9M Q;  3EJD A;  3RG6 C;  2JU1 A;  4XFX A;  2KGA A;  2KOR A;  3P05 A;  2AVA A;  2CG5 B;  3CMA P;  2CQ8 A;  2K94 A;  4U0F A;  2GZJ A;  2CGQ A;  1W2B O;  3G29 A;  2KGD A;  1KQS O;  1EMV A;  4U0D A;  4COP A;  5HGM A;  4QKO A;  4F37 A;  1RNI A;  2K0X A;  2PEN A;  3DS0 A;  1IMP A;  1S72 P;  2N50 A;  4PXH B;  3G1G A;  1YJW P;  1VQ5 P;  1RO0 A;  3I55 P;  2EIA A;  1VQP P;  3HYB A;  1VHN A;  1HY8 A;  3WBH A;  1VQO P;  3CC2 P;  3CXC O;  2BHV A;  5BS1 A;  1M6E X;  2JYG A;  1Q82 Q;  4PH0 A;  1L0H A;  2JBG A;  4BPF A;  2AFE A;  3G0V A;  1BXI A;  3H0D A;  2MD9 A;  4H2W C;  2KR5 A;  5F2N A;  1NQ4 A;  2LML A;  2X2B A;  2EHT A;  2FHS C;  1N8R Q;  2KGE A;  2KOO A;  1M74 A;  5KP7 B;  2CWO A;  4PWV B;  3CCJ P;  3GZM A;  1GPJ A;  1Q81 Q;  4BPG A;  3DS5 A;  5BS2 A;  1YHQ P;  4WYM A;  1YIJ P;  2GDY A;  2JAZ A;  1M6N A;  3VRL C;  1JJ2 O;  1ZMB A;  3DS2 A;  4PH1 A;  1VQN P;  4XRO A;  5F2O A;  2VLN A;  1KD1 Q;  3U43 A;  1RO2 A;  2GZG A;  2XT1 A;  3G71 P;  3CCM P;  2FQ0 A;  2FQ2 A;  2K92 A;  2NO8 A;  5HGL A;  2PY8 A;  4U0C A;  3B5I A;  2QNW A;  2M8P A;  3M1M A;  3RG2 A;  2EG5 A;  4R0M A;  4XFZ A;  1YJ9 P;  3CC7 P;  2BUO A;  3G21 A;  2K5X A;  4QNB A;  1CEI A;  3H47 A;  1ACP A;  1VQ8 P;  2MR8 A;  1MZ8 A;  3EJB A;  2L22 A;  5EJD A;  1QVF O;  1VKU A;  5HV8 A;  2FVF A;  3OW2 O;  2FQ1 A;  2PEI A;  2K2Q A;  2M8L A;  2PEO A;  4XFY A;  5F2K A;  5I4T G;  2JB0 A;  3CCQ P;  2KOP A;  2CNR A;  2PEK A;  1NJI Q;  2MR7 A;  3GJN A;  4H2X C;  1DV5 A;  2GDW A; 
#chains in the Genus database with same CATH homology
 2GZJ A;  1UJZ A;  1E0H A;  1MZ8 A;  4UHP B;  2GZE A;  2NO8 A;  5EW5 E;  1FR2 A;  2JAZ A;  2GYK A;  2VLQ A;  2VLP A;  2WPT A;  2GZF A;  2K0D X;  1EMV A;  1UNK A;  1IMQ A;  1GXG A;  2VLO A;  2JBG A;  4QKO A;  1GXH A;  2ERH A;  1AYI A;  2JB0 A;  4F37 A;  1BXI A;  2GZI A;  3GKL C;  2K5X A;  7CEI A;  3GJN A;  1CEI A;  2VLN A;  1IMP A;  3U43 A;  2GZG A;  1ZNV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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