1UJZA

Crystal structure of the e7_c/im7_c complex; a computationally designed interface between the colicin e7 dnase and the im7 immunity protein
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
87
structure length
87
Chain Sequence
MELKNSISDYTEAEFVQLLKEIEKENVAATDDVLYVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKPGFKQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
source organism Escherichia coli
publication title Computational redesign of protein-protein interaction specificity
pubmed doi rcsb
molecule keywords Designed Colicin E7 immunity protein
total genus 30
structure length 87
sequence length 87
ec nomenclature
pdb deposition date 2003-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1ujzA00
4F37A 1MZ8A 2VLPA 1CEIA 3GKLC 4UHPB 2K5XA 2K0DX 3U43A 1GXHA 5EW5E 1GXGA 2GYKA 1UJZA 1ZNVA 2GZJA 1BXIA 2JAZA 2VLQA 2VLNA 1IMPA 2ERHA 2JB0A 2WPTA 1EMVA 2JBGA 3GJNA 2VLOA 1AYIA 2GZIA 1IMQA 7CEIA 2NO8A 2GZGA 2GZFA 2GZEA 1UNKA 1FR2A 4QKOA 1E0HA
chains in the Genus database with same CATH superfamily
1BAJA 1F80D 3H4EA 1K8AQ 5EW5E 3CCRP 2K93A 1KQSO 1BXIA 3MGEA 4XFXA 1KC8Q 2JB0A 2MY5A 1KLPA 1YJWP 3HYBA 2KG8A 1ZMBA 2LL8A 3DS2A 2MVUA 3GKLC 3CC4P 2ONTA 1GXHA 2PEOA 4BPFA 2MR8A 2LMLA 1VKUA 2LIUA 2LKIA 2JBGA 2NO8A 2FQ0A 4U0CA 2P9XA 2XXMA 2FVFA 1K9MQ 4H2WC 2L4BA 2EG5A 3VRLC 1K30A 3G1IA 2DNWA 2XZ0D 3DS5A 2K0XA 1AYIA 2GZGA 4U0AA 3Q20A 2AVAA 2FVAA 1RNIA 3G1GA 2N6ZA 3U43A 2KGEA 2PNGA 2GZJA 2JGPA 1RO0A 2MVVA 2XV6A 2KOSA 2XZ1C 2VLNA 3RG6C 2KOPA 2GZIA 2PENA 1Q82Q 3M1MA 5HV8A 4QKOA 1M74A 1VQLP 3G4SP 5I4TG 2QEXP 1VQ8P 2EFJA 1N8RQ 2L9FA 1VQ6P 4CA3A 4U0EA 2K94A 2AFDA 3CCSP 2JAZA 2JO0A 2FHSC 4XRQA 1IMPA 4NEOA 2JU2A 2AF8A 2JQ4A 4PH0A 1QRJA 1RO2A 3CMAP 4F37A 4U0FA 5F2KA 2KOQA 4UHPB 1EOQA 1ZNVA 1E6JP 4BPGA 1D1DA 2ERHA 2KOOA 2L22A 4PWVB 3GJNA 2LOLA 3DS1A 2EIAA 3EJEA 5HGOA 1OR5A 3WBHA 2OARA 5F2OA 3CCJP 2N50A 2GDXA 2CGQA 3CCMP 1A43A 1M90Q 2N98A 3OW2O 2LIWA 2OTLP 2KGDA 1YITP 2K92A 1X3OA 3DTJA 2GZFA 2CG5B 1VQ7P 5F2NA 2E1MA 1CEIA 3GZLA 1QVFO 5KP8B 3G28A 3CMEP 4GR6A 3DPHA 2JYLA 2JYGA 2CNRA 3B4QA 1VQ5P 2DGYA 3EJBA 5HGMA 4DG9A 3G0VA 1Q86Q 3B5IA 1K73Q 3G21A 4U0BA 4XROA 1YI2P 5CZDB 3CCVP 3LMOA 1YHQP 2AFEA 2OTJP 4COCA 2KWLA 1VQKP 1M1KQ 1VQPP 2KG6A 4PH1A 4HKGA 1VQ4P 4PXHB 3EJDA 2LTEA 2VLOA 2ROQA 1JJ2O 1YIJP 2KGCA 2GDYA 1A8OA 1QVGO 2BUOA 1MZ8A 3LRYA 2VLPA 3CC2P 5HVCA 2MD9A 3G71P 3DS4A 4WYMA 1KD1Q 2KR5A 1EMVA 2XT1A 1T8KA 4U0DA 4H2XC 7CEIA 2KW2A 4XFYA 4IZ6A 1L0HA 4BPHA 2PEQA 4R0MA 3I56P 1NQ4A 3CCQP 1YJNP 2VLQA 3CCLP 3CXCO 1VQ9P 3RG2A 2PEIA 2PY8A 2N5HA 5HGNA 2K0YA 3GZMA 2GZEA 3DS3A 2EHTA 3NY7B 4IPYA 2QNWA 1Q81Q 2FQ1A 1AF8A 1YJ9P 2GYKA 1UJZA 2QA4P 3CE7A 2MF4A 3CD6P 2WPTA 1AUMA 2PEKA 4H2YC 3CC7P 2PEMA 1EIAA 3H0DA 2FQ2A 4M0IA 1FR2A 1E0HA 1L0IA 4QNBA 1W2BO 1S72P 1NJIQ 2K2QA 1GPJA 1M6NA 1DV5A 2LPKA 2MR7A 2N6YA 2L0QA 2M5RA 2M8NA 1VQNP 1M6EX 2LF4A 3G29A 1VHNA 1HY8A 1DNYA 2KGAA 2KG9A 1UNKA 5JPAA 2FVEA 1HQBA 3CCEP 2Z45A 3P05A 3E2DA 1IUQA 5EJDA 2EHSA 2KORA 2FACA 2M8LA 5BS1A 4COPA 5HGLA 2N5IA 3CPWO 2FAEA 2VSQA 3G26A 2L6EA 2CWOA 2Z44A 1GXGA 1VQOP 4MRTC 2CQ8A 2FADA 5BS2A 2GDWA 2X2BA 2Z46A 2BHVA 1Q7YQ 2M8PA 2KODA 3CCUP 5DCKA 2JU1A 2K5XA 2K0DX 3NTEA 1VQMP 2PEJA 3H47A 4XFZA 3G6EP 5KP6B 5KP7B 3HZQA 1ACPA 1IMQA 4GR2A 3I55P 3DS0A 1Z6MA
chains in the Genus database with same CATH topology
4F37A 1MZ8A 2VLPA 1CEIA 3GKLC 4UHPB 2K5XA 2K0DX 3U43A 1GXHA 5EW5E 1GXGA 2GYKA 1UJZA 1ZNVA 2GZJA 1BXIA 2JAZA 2VLQA 2VLNA 1IMPA 2ERHA 2JB0A 2WPTA 1EMVA 2JBGA 3GJNA 2VLOA 1AYIA 2GZIA 1IMQA 7CEIA 2NO8A 2GZGA 2GZFA 2GZEA 1UNKA 1FR2A 4QKOA 1E0HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F37 A;  1MZ8 A;  2VLP A;  1CEI A;  3GKL C;  4UHP B;  2K5X A;  2K0D X;  3U43 A;  1GXH A;  5EW5 E;  1GXG A;  2GYK A;  1UJZ A;  1ZNV A;  2GZJ A;  1BXI A;  2JAZ A;  2VLQ A;  2VLN A;  1IMP A;  2ERH A;  2JB0 A;  2WPT A;  1EMV A;  2JBG A;  3GJN A;  2VLO A;  1AYI A;  2GZI A;  1IMQ A;  7CEI A;  2NO8 A;  2GZG A;  2GZF A;  2GZE A;  1UNK A;  1FR2 A;  4QKO A;  1E0H A; 
#chains in the Genus database with same CATH topology
 1BAJ A;  1F80 D;  3H4E A;  1K8A Q;  5EW5 E;  3CCR P;  2K93 A;  1KQS O;  1BXI A;  3MGE A;  4XFX A;  1KC8 Q;  2JB0 A;  2MY5 A;  1KLP A;  1YJW P;  3HYB A;  2KG8 A;  1ZMB A;  2LL8 A;  3DS2 A;  2MVU A;  3GKL C;  3CC4 P;  2ONT A;  1GXH A;  2PEO A;  4BPF A;  2MR8 A;  2LML A;  1VKU A;  2LIU A;  2LKI A;  2JBG A;  2NO8 A;  2FQ0 A;  4U0C A;  2P9X A;  2XXM A;  2FVF A;  1K9M Q;  4H2W C;  2L4B A;  2EG5 A;  3VRL C;  1K30 A;  3G1I A;  2DNW A;  2XZ0 D;  3DS5 A;  2K0X A;  1AYI A;  2GZG A;  4U0A A;  3Q20 A;  2AVA A;  2FVA A;  1RNI A;  3G1G A;  2N6Z A;  3U43 A;  2KGE A;  2PNG A;  2GZJ A;  2JGP A;  1RO0 A;  2MVV A;  2XV6 A;  2KOS A;  2XZ1 C;  2VLN A;  3RG6 C;  2KOP A;  2GZI A;  2PEN A;  1Q82 Q;  3M1M A;  5HV8 A;  4QKO A;  1M74 A;  1VQL P;  3G4S P;  5I4T G;  2QEX P;  1VQ8 P;  2EFJ A;  1N8R Q;  2L9F A;  1VQ6 P;  4CA3 A;  4U0E A;  2K94 A;  2AFD A;  3CCS P;  2JAZ A;  2JO0 A;  2FHS C;  4XRQ A;  1IMP A;  4NEO A;  2JU2 A;  2AF8 A;  2JQ4 A;  4PH0 A;  1QRJ A;  1RO2 A;  3CMA P;  4F37 A;  4U0F A;  5F2K A;  2KOQ A;  4UHP B;  1EOQ A;  1ZNV A;  1E6J P;  4BPG A;  1D1D A;  2ERH A;  2KOO A;  2L22 A;  4PWV B;  3GJN A;  2LOL A;  3DS1 A;  2EIA A;  3EJE A;  5HGO A;  1OR5 A;  3WBH A;  2OAR A;  5F2O A;  3CCJ P;  2N50 A;  2GDX A;  2CGQ A;  3CCM P;  1A43 A;  1M90 Q;  2N98 A;  3OW2 O;  2LIW A;  2OTL P;  2KGD A;  1YIT P;  2K92 A;  1X3O A;  3DTJ A;  2GZF A;  2CG5 B;  1VQ7 P;  5F2N A;  2E1M A;  1CEI A;  3GZL A;  1QVF O;  5KP8 B;  3G28 A;  3CME P;  4GR6 A;  3DPH A;  2JYL A;  2JYG A;  2CNR A;  3B4Q A;  1VQ5 P;  2DGY A;  3EJB A;  5HGM A;  4DG9 A;  3G0V A;  1Q86 Q;  3B5I A;  1K73 Q;  3G21 A;  4U0B A;  4XRO A;  1YI2 P;  5CZD B;  3CCV P;  3LMO A;  1YHQ P;  2AFE A;  2OTJ P;  4COC A;  2KWL A;  1VQK P;  1M1K Q;  1VQP P;  2KG6 A;  4PH1 A;  4HKG A;  1VQ4 P;  4PXH B;  3EJD A;  2LTE A;  2VLO A;  2ROQ A;  1JJ2 O;  1YIJ P;  2KGC A;  2GDY A;  1A8O A;  1QVG O;  2BUO A;  1MZ8 A;  3LRY A;  2VLP A;  3CC2 P;  5HVC A;  2MD9 A;  3G71 P;  3DS4 A;  4WYM A;  1KD1 Q;  2KR5 A;  1EMV A;  2XT1 A;  1T8K A;  4U0D A;  4H2X C;  7CEI A;  2KW2 A;  4XFY A;  4IZ6 A;  1L0H A;  4BPH A;  2PEQ A;  4R0M A;  3I56 P;  1NQ4 A;  3CCQ P;  1YJN P;  2VLQ A;  3CCL P;  3CXC O;  1VQ9 P;  3RG2 A;  2PEI A;  2PY8 A;  2N5H A;  5HGN A;  2K0Y A;  3GZM A;  2GZE A;  3DS3 A;  2EHT A;  3NY7 B;  4IPY A;  2QNW A;  1Q81 Q;  2FQ1 A;  1AF8 A;  1YJ9 P;  2GYK A;  1UJZ A;  2QA4 P;  3CE7 A;  2MF4 A;  3CD6 P;  2WPT A;  1AUM A;  2PEK A;  4H2Y C;  3CC7 P;  2PEM A;  1EIA A;  3H0D A;  2FQ2 A;  4M0I A;  1FR2 A;  1E0H A;  1L0I A;  4QNB A;  1W2B O;  1S72 P;  1NJI Q;  2K2Q A;  1GPJ A;  1M6N A;  1DV5 A;  2LPK A;  2MR7 A;  2N6Y A;  2L0Q A;  2M5R A;  2M8N A;  1VQN P;  1M6E X;  2LF4 A;  3G29 A;  1VHN A;  1HY8 A;  1DNY A;  2KGA A;  2KG9 A;  1UNK A;  5JPA A;  2FVE A;  1HQB A;  3CCE P;  2Z45 A;  3P05 A;  3E2D A;  1IUQ A;  5EJD A;  2EHS A;  2KOR A;  2FAC A;  2M8L A;  5BS1 A;  4COP A;  5HGL A;  2N5I A;  3CPW O;  2FAE A;  2VSQ A;  3G26 A;  2L6E A;  2CWO A;  2Z44 A;  1GXG A;  1VQO P;  4MRT C;  2CQ8 A;  2FAD A;  5BS2 A;  2GDW A;  2X2B A;  2Z46 A;  2BHV A;  1Q7Y Q;  2M8P A;  2KOD A;  3CCU P;  5DCK A;  2JU1 A;  2K5X A;  2K0D X;  3NTE A;  1VQM P;  2PEJ A;  3H47 A;  4XFZ A;  3G6E P;  5KP6 B;  5KP7 B;  3HZQ A;  1ACP A;  1IMQ A;  4GR2 A;  3I55 P;  3DS0 A;  1Z6M A; 
#chains in the Genus database with same CATH homology
 4F37 A;  1MZ8 A;  2VLP A;  1CEI A;  3GKL C;  4UHP B;  2K5X A;  2K0D X;  3U43 A;  1GXH A;  5EW5 E;  1GXG A;  2GYK A;  1UJZ A;  1ZNV A;  2GZJ A;  1BXI A;  2JAZ A;  2VLQ A;  2VLN A;  1IMP A;  2ERH A;  2JB0 A;  2WPT A;  1EMV A;  2JBG A;  3GJN A;  2VLO A;  1AYI A;  2GZI A;  1IMQ A;  7CEI A;  2NO8 A;  2GZG A;  2GZF A;  2GZE A;  1UNK A;  1FR2 A;  4QKO A;  1E0H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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