1UJZA

Crystal structure of the e7_c/im7_c complex; a computationally designed interface between the colicin e7 dnase and the im7 immunity protein
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
87
structure length
87
Chain Sequence
MELKNSISDYTEAEFVQLLKEIEKENVAATDDVLYVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKPGFKQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Designed Colicin E7 immunity protein
publication title Computational redesign of protein-protein interaction specificity
pubmed doi rcsb
source organism Escherichia coli
molecule tags Immune system
total genus 30
structure length 87
sequence length 87
ec nomenclature
pdb deposition date 2003-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1ujzA00
2GZEA 2K0DX 1FR2A 5EW5E 4F37A 2GZJA 4QKOA 2GYKA 2JAZA 2JBGA 1E0HA 1IMQA 1CEIA 2ERHA 3U43A 1IMPA 2GZIA 1UNKA 1AYIA 1UJZA 7CEIA 1GXHA 4UHPB 2NO8A 1EMVA 2WPTA 1GXGA 2VLOA 2GZGA 3GJNA 2K5XA 1ZNVA 2GZFA 2VLQA 3GKLC 1BXIA 2VLNA 1MZ8A 2JB0A 2VLPA
chains in the Genus database with same CATH superfamily
3CCLP 1K9MQ 4R0MA 3I55P 1A8OA 3HZQA 4M0IA 2GZIA 3CCQP 4PH0A 3DS2A 1GPJA 2AF8A 2MY5A 2JO0A 1A43A 2KORA 1VQNP 3CCSP 1BAJA 4H2YC 1YITP 5F2KA 2MVVA 4F37A 2K94A 1OR5A 2PEKA 1CEIA 3DPHA 2MD9A 2K2QA 5HGLA 3LMOA 4UHPB 3CCJP 3RG2A 2JQ4A 1KLPA 3WBHA 4COPA 3G6EP 5DCKA 1VQPP 2MF4A 1MZ8A 4PH1A 3VRLC 1M1KQ 3CC7P 1W2BO 2FVFA 3CCEP 2XT1A 1VQLP 3DS3A 4XFZA 2FVEA 2VSQA 2DGYA 2LKIA 2XZ0D 1UJZA 3CD6P 2WPTA 1GXGA 3DS1A 3CE7A 2KWLA 3B4QA 4DG9A 1FR2A 2L6EA 1E0HA 2JU1A 1IMPA 2GDYA 4NEOA 3CPWO 2Z44A 2Z46A 2FQ0A 2PEJA 2PEQA 1EIAA 3CC4P 3DS0A 1QVFO 2FQ2A 2FADA 4H2WC 3LRYA 2ROQA 2OTLP 2BUOA 1RO0A 2EHSA 3CCUP 4PXHB 2FVAA 5HV8A 2MVUA 1AYIA 1GXHA 2FQ1A 1KC8Q 2LTEA 2PEIA 4XROA 4H2XC 3EJBA 2EIAA 1ZNVA 3G71P 3CMEP 1HQBA 2KGCA 3H47A 3G29A 1IMQA 2K92A 3EJDA 1NJIQ 2EFJA 4U0BA 1K73Q 2AVAA 4XFYA 1M6EX 2CGQA 2KOQA 3MGEA 1Q82Q 3CC2P 3CCRP 2ERHA 1K8AQ 4HKGA 3NY7B 2N6ZA 7CEIA 5HGOA 2LMLA 2L4BA 2VLOA 1L0HA 3GZMA 2X2BA 2KOPA 5F2NA 2QA4P 2LL8A 1VHNA 2GDXA 4QKOA 2KGDA 4BPFA 4BPHA 1AUMA 2P9XA 2L9FA 2OTJP 1S72P 1VQMP 1RO2A 2PNGA 3GJNA 4GR2A 3EJEA 4GR6A 1VQ5P 1VQ4P 4U0EA 2JYGA 2AFDA 1YIJP 2KODA 1YI2P 5F2OA 1KQSO 2XXMA 2JU2A 3U43A 2GDWA 1NQ4A 3NTEA 5BS2A 2LIWA 2L22A 1Q86Q 1Q81Q 2KOOA 1AF8A 1ZMBA 2LIUA 3HYBA 4QNBA 2XV6A 4U0AA 2EHTA 2JBGA 5HGNA 2N98A 1M74A 3H4EA 3DTJA 1E6JP 1YHQP 1QRJA 1Z6MA 2LPKA 1YJWP 3G1GA 2CWOA 1BXIA 2AFEA 3CXCO 2PENA 1M6NA 4U0FA 2JB0A 5HVCA 2ONTA 4CA3A 2MR7A 2N6YA 1D1DA 1X3OA 2N5HA 3G1IA 1EMVA 2KR5A 1DV5A 2KG9A 2CNRA 3G26A 3P05A 3CMAP 1HY8A 5EW5E 2GZJA 5EJDA 5CZDB 1M90Q 2L0QA 1YJNP 3B5IA 3I56P 2GZGA 3OW2O 1K30A 2JYLA 4WYMA 2PY8A 3GKLC 1ACPA 3H0DA 1VQKP 2KG6A 2K0XA 3DS4A 1IUQA 2KOSA 3CCMP 2XZ1C 2Z45A 4U0CA 2OARA 1L0IA 2PEOA 2DNWA 1JJ2O 4XFXA 2LF4A 4BPGA 1F80D 2FACA 4MRTC 5KP6B 2GZFA 2K0YA 1N8RQ 2M8NA 2GZEA 1VQ9P 2GYKA 2JAZA 2FHSC 5KP8B 1EOQA 3E2DA 1T8KA 1DNYA 3DS5A 2N5IA 4PWVB 2VLQA 2KW2A 1Q7YQ 1KD1Q 1VQ6P 1YJ9P 2N50A 4U0DA 2MR8A 5KP7B 2FAEA 2M8LA 2CQ8A 2QNWA 2E1MA 3G4SP 3GZLA 3CCVP 1VQOP 2BHVA 5BS1A 2NO8A 2KGEA 5JPAA 1RNIA 3RG6C 2EG5A 4COCA 5I4TG 2K5XA 3Q20A 1QVGO 2M8PA 4IZ6A 2JGPA 1VKUA 2K0DX 3G28A 5HGMA 2M5RA 1VQ7P 2QEXP 4XRQA 2KG8A 1UNKA 3G21A 2CG5B 2KGAA 3G0VA 1VQ8P 3M1MA 2K93A 4IPYA 2VLNA 2PEMA 2LOLA 2VLPA
chains in the Genus database with same CATH topology
2GZEA 2K0DX 1FR2A 5EW5E 4F37A 2GZJA 4QKOA 2GYKA 2JAZA 2JBGA 1E0HA 1IMQA 1CEIA 2ERHA 3U43A 1IMPA 2GZIA 1UNKA 1AYIA 1UJZA 7CEIA 1GXHA 4UHPB 2NO8A 1EMVA 2WPTA 1GXGA 2VLOA 2GZGA 3GJNA 2K5XA 1ZNVA 2GZFA 2VLQA 3GKLC 1BXIA 2VLNA 1MZ8A 2JB0A 2VLPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GZE A;  2K0D X;  1FR2 A;  5EW5 E;  4F37 A;  2GZJ A;  4QKO A;  2GYK A;  2JAZ A;  2JBG A;  1E0H A;  1IMQ A;  1CEI A;  2ERH A;  3U43 A;  1IMP A;  2GZI A;  1UNK A;  1AYI A;  1UJZ A;  7CEI A;  1GXH A;  4UHP B;  2NO8 A;  1EMV A;  2WPT A;  1GXG A;  2VLO A;  2GZG A;  3GJN A;  2K5X A;  1ZNV A;  2GZF A;  2VLQ A;  3GKL C;  1BXI A;  2VLN A;  1MZ8 A;  2JB0 A;  2VLP A; 
#chains in the Genus database with same CATH topology
 3CCL P;  1K9M Q;  4R0M A;  3I55 P;  1A8O A;  3HZQ A;  4M0I A;  2GZI A;  3CCQ P;  4PH0 A;  3DS2 A;  1GPJ A;  2AF8 A;  2MY5 A;  2JO0 A;  1A43 A;  2KOR A;  1VQN P;  3CCS P;  1BAJ A;  4H2Y C;  1YIT P;  5F2K A;  2MVV A;  4F37 A;  2K94 A;  1OR5 A;  2PEK A;  1CEI A;  3DPH A;  2MD9 A;  2K2Q A;  5HGL A;  3LMO A;  4UHP B;  3CCJ P;  3RG2 A;  2JQ4 A;  1KLP A;  3WBH A;  4COP A;  3G6E P;  5DCK A;  1VQP P;  2MF4 A;  1MZ8 A;  4PH1 A;  3VRL C;  1M1K Q;  3CC7 P;  1W2B O;  2FVF A;  3CCE P;  2XT1 A;  1VQL P;  3DS3 A;  4XFZ A;  2FVE A;  2VSQ A;  2DGY A;  2LKI A;  2XZ0 D;  1UJZ A;  3CD6 P;  2WPT A;  1GXG A;  3DS1 A;  3CE7 A;  2KWL A;  3B4Q A;  4DG9 A;  1FR2 A;  2L6E A;  1E0H A;  2JU1 A;  1IMP A;  2GDY A;  4NEO A;  3CPW O;  2Z44 A;  2Z46 A;  2FQ0 A;  2PEJ A;  2PEQ A;  1EIA A;  3CC4 P;  3DS0 A;  1QVF O;  2FQ2 A;  2FAD A;  4H2W C;  3LRY A;  2ROQ A;  2OTL P;  2BUO A;  1RO0 A;  2EHS A;  3CCU P;  4PXH B;  2FVA A;  5HV8 A;  2MVU A;  1AYI A;  1GXH A;  2FQ1 A;  1KC8 Q;  2LTE A;  2PEI A;  4XRO A;  4H2X C;  3EJB A;  2EIA A;  1ZNV A;  3G71 P;  3CME P;  1HQB A;  2KGC A;  3H47 A;  3G29 A;  1IMQ A;  2K92 A;  3EJD A;  1NJI Q;  2EFJ A;  4U0B A;  1K73 Q;  2AVA A;  4XFY A;  1M6E X;  2CGQ A;  2KOQ A;  3MGE A;  1Q82 Q;  3CC2 P;  3CCR P;  2ERH A;  1K8A Q;  4HKG A;  3NY7 B;  2N6Z A;  7CEI A;  5HGO A;  2LML A;  2L4B A;  2VLO A;  1L0H A;  3GZM A;  2X2B A;  2KOP A;  5F2N A;  2QA4 P;  2LL8 A;  1VHN A;  2GDX A;  4QKO A;  2KGD A;  4BPF A;  4BPH A;  1AUM A;  2P9X A;  2L9F A;  2OTJ P;  1S72 P;  1VQM P;  1RO2 A;  2PNG A;  3GJN A;  4GR2 A;  3EJE A;  4GR6 A;  1VQ5 P;  1VQ4 P;  4U0E A;  2JYG A;  2AFD A;  1YIJ P;  2KOD A;  1YI2 P;  5F2O A;  1KQS O;  2XXM A;  2JU2 A;  3U43 A;  2GDW A;  1NQ4 A;  3NTE A;  5BS2 A;  2LIW A;  2L22 A;  1Q86 Q;  1Q81 Q;  2KOO A;  1AF8 A;  1ZMB A;  2LIU A;  3HYB A;  4QNB A;  2XV6 A;  4U0A A;  2EHT A;  2JBG A;  5HGN A;  2N98 A;  1M74 A;  3H4E A;  3DTJ A;  1E6J P;  1YHQ P;  1QRJ A;  1Z6M A;  2LPK A;  1YJW P;  3G1G A;  2CWO A;  1BXI A;  2AFE A;  3CXC O;  2PEN A;  1M6N A;  4U0F A;  2JB0 A;  5HVC A;  2ONT A;  4CA3 A;  2MR7 A;  2N6Y A;  1D1D A;  1X3O A;  2N5H A;  3G1I A;  1EMV A;  2KR5 A;  1DV5 A;  2KG9 A;  2CNR A;  3G26 A;  3P05 A;  3CMA P;  1HY8 A;  5EW5 E;  2GZJ A;  5EJD A;  5CZD B;  1M90 Q;  2L0Q A;  1YJN P;  3B5I A;  3I56 P;  2GZG A;  3OW2 O;  1K30 A;  2JYL A;  4WYM A;  2PY8 A;  3GKL C;  1ACP A;  3H0D A;  1VQK P;  2KG6 A;  2K0X A;  3DS4 A;  1IUQ A;  2KOS A;  3CCM P;  2XZ1 C;  2Z45 A;  4U0C A;  2OAR A;  1L0I A;  2PEO A;  2DNW A;  1JJ2 O;  4XFX A;  2LF4 A;  4BPG A;  1F80 D;  2FAC A;  4MRT C;  5KP6 B;  2GZF A;  2K0Y A;  1N8R Q;  2M8N A;  2GZE A;  1VQ9 P;  2GYK A;  2JAZ A;  2FHS C;  5KP8 B;  1EOQ A;  3E2D A;  1T8K A;  1DNY A;  3DS5 A;  2N5I A;  4PWV B;  2VLQ A;  2KW2 A;  1Q7Y Q;  1KD1 Q;  1VQ6 P;  1YJ9 P;  2N50 A;  4U0D A;  2MR8 A;  5KP7 B;  2FAE A;  2M8L A;  2CQ8 A;  2QNW A;  2E1M A;  3G4S P;  3GZL A;  3CCV P;  1VQO P;  2BHV A;  5BS1 A;  2NO8 A;  2KGE A;  5JPA A;  1RNI A;  3RG6 C;  2EG5 A;  4COC A;  5I4T G;  2K5X A;  3Q20 A;  1QVG O;  2M8P A;  4IZ6 A;  2JGP A;  1VKU A;  2K0D X;  3G28 A;  5HGM A;  2M5R A;  1VQ7 P;  2QEX P;  4XRQ A;  2KG8 A;  1UNK A;  3G21 A;  2CG5 B;  2KGA A;  3G0V A;  1VQ8 P;  3M1M A;  2K93 A;  4IPY A;  2VLN A;  2PEM A;  2LOL A;  2VLP A; 
#chains in the Genus database with same CATH homology
 2GZE A;  2K0D X;  1FR2 A;  5EW5 E;  4F37 A;  2GZJ A;  4QKO A;  2GYK A;  2JAZ A;  2JBG A;  1E0H A;  1IMQ A;  1CEI A;  2ERH A;  3U43 A;  1IMP A;  2GZI A;  1UNK A;  1AYI A;  1UJZ A;  7CEI A;  1GXH A;  4UHP B;  2NO8 A;  1EMV A;  2WPT A;  1GXG A;  2VLO A;  2GZG A;  3GJN A;  2K5X A;  1ZNV A;  2GZF A;  2VLQ A;  3GKL C;  1BXI A;  2VLN A;  1MZ8 A;  2JB0 A;  2VLP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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