1UJZA

Crystal structure of the e7_c/im7_c complex; a computationally designed interface between the colicin e7 dnase and the im7 immunity protein
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
87
structure length
87
Chain Sequence
MELKNSISDYTEAEFVQLLKEIEKENVAATDDVLYVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKPGFKQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Designed Colicin E7 immunity protein
publication title Computational redesign of protein-protein interaction specificity
pubmed doi rcsb
source organism Escherichia coli
total genus 30
structure length 87
sequence length 87
ec nomenclature
pdb deposition date 2003-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1ujzA00
2JBGA 3GKLC 2VLPA 2JAZA 7CEIA 2GZGA 2VLOA 2GZEA 4F37A 2JB0A 2NO8A 3GJNA 1IMQA 4UHPB 4QKOA 2GZFA 2K0DX 1AYIA 1UNKA 1MZ8A 1ZNVA 2GZJA 1EMVA 3U43A 2ERHA 2WPTA 2GYKA 1E0HA 2VLQA 1CEIA 2VLNA 1UJZA 2GZIA 1IMPA 1FR2A 2K5XA 1GXGA 5EW5E 1BXIA 1GXHA
chains in the Genus database with same CATH superfamily
2K0XA 1D1DA 2FQ0A 3G28A 2OTLP 2DNWA 5HGMA 1QRJA 3M1MA 1IMQA 5I4TG 2FQ2A 3H47A 4COPA 1VQ7P 2EIAA 1KD1Q 2JO0A 2VSQA 1KQSO 1JJ2O 2X2BA 1CEIA 2CNRA 4COCA 2Z45A 2FVEA 2Z44A 4H2YC 1VQLP 2E1MA 3NY7B 3HZQA 1T8KA 2JYGA 2JAZA 2VLOA 5F2OA 2AVAA 2M8PA 2PY8A 3DS2A 1Q81Q 2KG8A 2K0YA 4H2WC 3RG6C 5F2KA 1A43A 1VKUA 2KW2A 2MF4A 2FVFA 4CA3A 3CCQP 4XROA 2VLPA 4XFYA 1BAJA 5BS2A 4PWVB 2M8NA 3LMOA 1M90Q 1E0HA 3GZLA 1YHQP 2FAEA 4XFZA 1W2BO 2K93A 1IMPA 2GZIA 2L0QA 3EJEA 2L22A 1VQ6P 3E2DA 3G6EP 3DPHA 1VQ8P 1K30A 4F37A 2LTEA 1VQOP 4H2XC 3DS1A 3CCVP 1L0IA 2LIUA 1NQ4A 2ROQA 1M74A 1M6NA 3CCRP 3G1GA 2N98A 2PEKA 5JPAA 4GR6A 3I55P 1NJIQ 2QEXP 2GDXA 4BPHA 3DS5A 3GZMA 2N6YA 5KP6B 1S72P 1EOQA 2CGQA 2XT1A 1BXIA 2XXMA 3WBHA 1KC8Q 3NTEA 1VQ9P 1YIJP 2ONTA 2JQ4A 5DCKA 1QVFO 1E6JP 2JU1A 1AYIA 2LOLA 5F2NA 3EJDA 4XRQA 2KOOA 2ERHA 2VLQA 3DTJA 2EFJA 2DGYA 2JU2A 2P9XA 1FR2A 5EW5E 1GXHA 2KODA 1A8OA 2CG5B 4DG9A 1K73Q 5BS1A 1EIAA 2BUOA 3CXCO 2N5IA 3P05A 2QNWA 2KGCA 5HV8A 2N6ZA 4IZ6A 1VQ4P 2K94A 1Q7YQ 2CQ8A 3CPWO 2LMLA 3B4QA 4IPYA 2L4BA 1F80D 1VQKP 2FACA 3RG2A 2AFEA 2LPKA 5CZDB 4PH0A 1VQNP 2JYLA 2PEIA 2GZFA 2PNGA 1VQPP 2XV6A 1QVGO 1M1KQ 2KOQA 2KWLA 2KG9A 2N5HA 2MR7A 2Z46A 1UJZA 2M5RA 2KR5A 1HQBA 2LF4A 3G0VA 1AUMA 3CMAP 2K0DX 1ZMBA 1KLPA 2FADA 4PXHB 1YJ9P 5HVCA 4NEOA 4U0BA 2BHVA 2PEJA 3I56P 3MGEA 1Q82Q 2GZEA 4PH1A 2PENA 4BPGA 2M8LA 1ZNVA 3EJBA 3CC2P 3G29A 2XZ0D 2GDWA 4GR2A 3U43A 2QA4P 2WPTA 2MVVA 2FHSC 1Q86Q 4HKGA 1GXGA 4U0CA 1YJNP 1OR5A 1YI2P 1YITP 7CEIA 3CCUP 2PEQA 4QKOA 4QNBA 1YJWP 1N8RQ 1EMVA 3DS3A 2LIWA 3CC4P 3CE7A 1VQ5P 1VHNA 2KOSA 2PEOA 3CCSP 2CWOA 2KG6A 3GKLC 2OARA 2XZ1C 2MD9A 3GJNA 1VQMP 3LRYA 2EHSA 1HY8A 1X3OA 2EHTA 2OTJP 2JGPA 4XFXA 3G21A 3B5IA 2KOPA 3Q20A 3G71P 5KP8B 4BPFA 3H0DA 3CCLP 3CCJP 1K9MQ 1IUQA 3VRLC 1MZ8A 2GZJA 1RO0A 1RO2A 1DNYA 3G1IA 5HGLA 3CCEP 3CC7P 2FQ1A 2EG5A 2KGDA 2JBGA 2AFDA 2LKIA 3HYBA 4R0MA 2KGEA 3G4SP 4WYMA 4U0AA 2GDYA 5EJDA 3H4EA 5KP7B 5HGOA 4U0DA 3CMEP 2AF8A 4U0EA 2K5XA 2LL8A 3G26A 4U0FA 2GZGA 3DS4A 4UHPB 2MVUA 1RNIA 2PEMA 3CD6P 2L6EA 4M0IA 2N50A 2L9FA 5HGNA 2MR8A 3CCMP 2K2QA 3DS0A 1K8AQ 2KORA 1AF8A 1DV5A 1M6EX 2JB0A 2NO8A 1L0HA 4MRTC 2KGAA 1GPJA 1UNKA 2K92A 3OW2O 2GYKA 2VLNA 1Z6MA 1ACPA 2MY5A 2FVAA
chains in the Genus database with same CATH topology
2JBGA 3GKLC 2VLPA 2JAZA 7CEIA 2GZGA 2VLOA 2GZEA 4F37A 2JB0A 2NO8A 3GJNA 1IMQA 4UHPB 4QKOA 2GZFA 2K0DX 1AYIA 1UNKA 1MZ8A 1ZNVA 2GZJA 1EMVA 3U43A 2ERHA 2WPTA 2GYKA 1E0HA 2VLQA 1CEIA 2VLNA 1UJZA 2GZIA 1IMPA 1FR2A 2K5XA 1GXGA 5EW5E 1BXIA 1GXHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JBG A;  3GKL C;  2VLP A;  2JAZ A;  7CEI A;  2GZG A;  2VLO A;  2GZE A;  4F37 A;  2JB0 A;  2NO8 A;  3GJN A;  1IMQ A;  4UHP B;  4QKO A;  2GZF A;  2K0D X;  1AYI A;  1UNK A;  1MZ8 A;  1ZNV A;  2GZJ A;  1EMV A;  3U43 A;  2ERH A;  2WPT A;  2GYK A;  1E0H A;  2VLQ A;  1CEI A;  2VLN A;  1UJZ A;  2GZI A;  1IMP A;  1FR2 A;  2K5X A;  1GXG A;  5EW5 E;  1BXI A;  1GXH A; 
#chains in the Genus database with same CATH topology
 2K0X A;  1D1D A;  2FQ0 A;  3G28 A;  2OTL P;  2DNW A;  5HGM A;  1QRJ A;  3M1M A;  1IMQ A;  5I4T G;  2FQ2 A;  3H47 A;  4COP A;  1VQ7 P;  2EIA A;  1KD1 Q;  2JO0 A;  2VSQ A;  1KQS O;  1JJ2 O;  2X2B A;  1CEI A;  2CNR A;  4COC A;  2Z45 A;  2FVE A;  2Z44 A;  4H2Y C;  1VQL P;  2E1M A;  3NY7 B;  3HZQ A;  1T8K A;  2JYG A;  2JAZ A;  2VLO A;  5F2O A;  2AVA A;  2M8P A;  2PY8 A;  3DS2 A;  1Q81 Q;  2KG8 A;  2K0Y A;  4H2W C;  3RG6 C;  5F2K A;  1A43 A;  1VKU A;  2KW2 A;  2MF4 A;  2FVF A;  4CA3 A;  3CCQ P;  4XRO A;  2VLP A;  4XFY A;  1BAJ A;  5BS2 A;  4PWV B;  2M8N A;  3LMO A;  1M90 Q;  1E0H A;  3GZL A;  1YHQ P;  2FAE A;  4XFZ A;  1W2B O;  2K93 A;  1IMP A;  2GZI A;  2L0Q A;  3EJE A;  2L22 A;  1VQ6 P;  3E2D A;  3G6E P;  3DPH A;  1VQ8 P;  1K30 A;  4F37 A;  2LTE A;  1VQO P;  4H2X C;  3DS1 A;  3CCV P;  1L0I A;  2LIU A;  1NQ4 A;  2ROQ A;  1M74 A;  1M6N A;  3CCR P;  3G1G A;  2N98 A;  2PEK A;  5JPA A;  4GR6 A;  3I55 P;  1NJI Q;  2QEX P;  2GDX A;  4BPH A;  3DS5 A;  3GZM A;  2N6Y A;  5KP6 B;  1S72 P;  1EOQ A;  2CGQ A;  2XT1 A;  1BXI A;  2XXM A;  3WBH A;  1KC8 Q;  3NTE A;  1VQ9 P;  1YIJ P;  2ONT A;  2JQ4 A;  5DCK A;  1QVF O;  1E6J P;  2JU1 A;  1AYI A;  2LOL A;  5F2N A;  3EJD A;  4XRQ A;  2KOO A;  2ERH A;  2VLQ A;  3DTJ A;  2EFJ A;  2DGY A;  2JU2 A;  2P9X A;  1FR2 A;  5EW5 E;  1GXH A;  2KOD A;  1A8O A;  2CG5 B;  4DG9 A;  1K73 Q;  5BS1 A;  1EIA A;  2BUO A;  3CXC O;  2N5I A;  3P05 A;  2QNW A;  2KGC A;  5HV8 A;  2N6Z A;  4IZ6 A;  1VQ4 P;  2K94 A;  1Q7Y Q;  2CQ8 A;  3CPW O;  2LML A;  3B4Q A;  4IPY A;  2L4B A;  1F80 D;  1VQK P;  2FAC A;  3RG2 A;  2AFE A;  2LPK A;  5CZD B;  4PH0 A;  1VQN P;  2JYL A;  2PEI A;  2GZF A;  2PNG A;  1VQP P;  2XV6 A;  1QVG O;  1M1K Q;  2KOQ A;  2KWL A;  2KG9 A;  2N5H A;  2MR7 A;  2Z46 A;  1UJZ A;  2M5R A;  2KR5 A;  1HQB A;  2LF4 A;  3G0V A;  1AUM A;  3CMA P;  2K0D X;  1ZMB A;  1KLP A;  2FAD A;  4PXH B;  1YJ9 P;  5HVC A;  4NEO A;  4U0B A;  2BHV A;  2PEJ A;  3I56 P;  3MGE A;  1Q82 Q;  2GZE A;  4PH1 A;  2PEN A;  4BPG A;  2M8L A;  1ZNV A;  3EJB A;  3CC2 P;  3G29 A;  2XZ0 D;  2GDW A;  4GR2 A;  3U43 A;  2QA4 P;  2WPT A;  2MVV A;  2FHS C;  1Q86 Q;  4HKG A;  1GXG A;  4U0C A;  1YJN P;  1OR5 A;  1YI2 P;  1YIT P;  7CEI A;  3CCU P;  2PEQ A;  4QKO A;  4QNB A;  1YJW P;  1N8R Q;  1EMV A;  3DS3 A;  2LIW A;  3CC4 P;  3CE7 A;  1VQ5 P;  1VHN A;  2KOS A;  2PEO A;  3CCS P;  2CWO A;  2KG6 A;  3GKL C;  2OAR A;  2XZ1 C;  2MD9 A;  3GJN A;  1VQM P;  3LRY A;  2EHS A;  1HY8 A;  1X3O A;  2EHT A;  2OTJ P;  2JGP A;  4XFX A;  3G21 A;  3B5I A;  2KOP A;  3Q20 A;  3G71 P;  5KP8 B;  4BPF A;  3H0D A;  3CCL P;  3CCJ P;  1K9M Q;  1IUQ A;  3VRL C;  1MZ8 A;  2GZJ A;  1RO0 A;  1RO2 A;  1DNY A;  3G1I A;  5HGL A;  3CCE P;  3CC7 P;  2FQ1 A;  2EG5 A;  2KGD A;  2JBG A;  2AFD A;  2LKI A;  3HYB A;  4R0M A;  2KGE A;  3G4S P;  4WYM A;  4U0A A;  2GDY A;  5EJD A;  3H4E A;  5KP7 B;  5HGO A;  4U0D A;  3CME P;  2AF8 A;  4U0E A;  2K5X A;  2LL8 A;  3G26 A;  4U0F A;  2GZG A;  3DS4 A;  4UHP B;  2MVU A;  1RNI A;  2PEM A;  3CD6 P;  2L6E A;  4M0I A;  2N50 A;  2L9F A;  5HGN A;  2MR8 A;  3CCM P;  2K2Q A;  3DS0 A;  1K8A Q;  2KOR A;  1AF8 A;  1DV5 A;  1M6E X;  2JB0 A;  2NO8 A;  1L0H A;  4MRT C;  2KGA A;  1GPJ A;  1UNK A;  2K92 A;  3OW2 O;  2GYK A;  2VLN A;  1Z6M A;  1ACP A;  2MY5 A;  2FVA A; 
#chains in the Genus database with same CATH homology
 2JBG A;  3GKL C;  2VLP A;  2JAZ A;  7CEI A;  2GZG A;  2VLO A;  2GZE A;  4F37 A;  2JB0 A;  2NO8 A;  3GJN A;  1IMQ A;  4UHP B;  4QKO A;  2GZF A;  2K0D X;  1AYI A;  1UNK A;  1MZ8 A;  1ZNV A;  2GZJ A;  1EMV A;  3U43 A;  2ERH A;  2WPT A;  2GYK A;  1E0H A;  2VLQ A;  1CEI A;  2VLN A;  1UJZ A;  2GZI A;  1IMP A;  1FR2 A;  2K5X A;  1GXG A;  5EW5 E;  1BXI A;  1GXH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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