1EOQA

Rous sarcoma virus capsid protein: c-terminal domain
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
77
structure length
77
Chain Sequence
MDIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords GAG POLYPROTEIN CAPSID PROTEIN P27
publication title Structure and self-association of the Rous sarcoma virus capsid protein.
pubmed doi rcsb
source organism Rous sarcoma virus - prague c
molecule tags Viral protein
total genus 19
structure length 77
sequence length 77
ec nomenclature
pdb deposition date 2000-03-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 1eoqA00
5I4TG 2LF4A 2XT1A 3DS3A 2M8LA 1A8OA 5JPAA 4XFXA 4U0DA 3G28A 5DCKA 4COCA 2M8PA 1BAJA 2XXMA 2BUOA 3P05A 4U0FA 2ONTA 3G1GA 3DS2A 5HGOA 3NTEA 1D1DA 4IPYA 3DS4A 3DS0A 3VRLC 2JYLA 3H47A 4U0CA 3DS5A 4XROA 1AUMA 3DS1A 4U0AA 3MGEA 4M0IA 4PH1A 2KODA 2EIAA 3G1IA 5HGLA 3DPHA 4COPA 4XFZA 5HGMA 3LRYA 3H4EA 2L6EA 3G29A 4QNBA 4U0EA 2JYGA 4PH0A 2M8NA 4U0BA 4WYMA 4XFYA 2XV6A 3G0VA 2JO0A 3G21A 1A43A 5HGNA 1E6JP 3DTJA 4XRQA 1EIAA 1QRJA 1EOQA 3G26A
chains in the Genus database with same CATH superfamily
2MR8A 4COCA 2M8PA 2L4BA 2CQ8A 2DGYA 2MR7A 2LOLA 2JQ4A 2WPTA 4XFZA 1M1KQ 2PENA 1IMQA 1AF8A 2GDWA 2ERHA 1E6JP 2MD9A 1ZNVA 2X2BA 1Q86Q 2M8LA 1NJIQ 3CCRP 2FVEA 1FR2A 4IPYA 5KP8B 2NO8A 3CMEP 1DV5A 1AUMA 2ROQA 3CD6P 5HGMA 1YI2P 1W2BO 3GKLC 2AFEA 3CCJP 5KP6B 2KWLA 1Z6MA 4XRQA 4R0MA 1T8KA 4XFXA 4MRTC 2MF4A 1M6EX 2LTEA 3DS0A 4U0AA 1VQMP 2EIAA 3DPHA 4H2YC 1F80D 1YJWP 2EFJA 3RG6C 2VLQA 1K30A 2LIUA 2Z44A 2K0XA 4UHPB 2PEQA 2PEOA 2MY5A 1YITP 4HKGA 2GZFA 1M74A 2FVAA 2K93A 2KG9A 1X3OA 3LRYA 4PXHB 1QVFO 3HYBA 4PH0A 1S72P 2N98A 2XV6A 2KG8A 2XZ0D 1YHQP 2KR5A 2FQ2A 3CMAP 2AF8A 3M1MA 2PEJA 2XZ1C 1K73Q 1GXGA 4IZ6A 5F2NA 2PY8A 1N8RQ 2PEMA 1VKUA 1E0HA 2JB0A 1RO2A 4H2WC 1ACPA 2LIWA 1A43A 1BXIA 1A8OA 3CE7A 1YJNP 1MZ8A 1VQLP 5EW5E 2ONTA 3G6EP 1YJ9P 1KD1Q 2GZGA 4U0CA 2L9FA 3EJEA 2KGCA 1GXHA 5HGLA 2AFDA 1VQ9P 2L6EA 3CCLP 2VSQA 2GYKA 5EJDA 2OARA 4NEOA 3DS3A 3CCMP 3G1GA 3DS2A 3NTEA 4BPGA 1HQBA 2N5HA 2FADA 2JAZA 2KOSA 1JJ2O 2FQ1A 3G29A 4U0EA 4XFYA 4WYMA 2L22A 3G0VA 3CPWO 1QRJA 3G28A 5DCKA 1VHNA 4BPHA 2FQ0A 2VLOA 1OR5A 3CC7P 1GPJA 1NQ4A 2N5IA 4QNBA 3RG2A 5CZDB 2JO0A 3EJDA 2CWOA 3G26A 2M5RA 2XT1A 4U0FA 1L0IA 2QNWA 1Q82Q 3I56P 1UNKA 2AVAA 3GZMA 2FVFA 2K94A 4QKOA 1AYIA 5BS1A 1KQSO 2N6YA 1VQPP 3CCEP 2LL8A 2KOPA 3NY7B 2FHSC 3GZLA 1EMVA 2LF4A 5JPAA 1UJZA 4U0DA 3CC4P 4CA3A 3LMOA 3DS4A 3Q20A 4BPFA 3VRLC 2JYLA 1VQKP 2LMLA 1L0HA 2K0DX 1VQOP 3H4EA 4GR6A 1K9MQ 2KW2A 1Q81Q 3B5IA 1EIAA 1QVGO 2VLNA 5BS2A 2XXMA 3WBHA 2GDYA 5HGOA 2KGDA 2KGEA 3I55P 3DS1A 3G71P 2GZIA 4GR2A 2KODA 3HZQA 3CXCO 2JGPA 5I4TG 1YIJP 2GZEA 2KORA 7CEIA 1RO0A 2K0YA 2DNWA 2QEXP 1D1DA 3U43A 5HV8A 1HY8A 4PH1A 2M8NA 3CCUP 5HGNA 1K8AQ 4COPA 3G4SP 1VQNP 3CC2P 1IUQA 2KOOA 2N50A 2MVVA 2KG6A 1DNYA 2OTLP 3CCVP 2N6ZA 2VLPA 2KOQA 2FACA 3G21A 2CGQA 5F2KA 1ZMBA 2P9XA 2GDXA 1Q7YQ 1BAJA 1KC8Q 2EHSA 2K92A 3CCSP 3H47A 1KLPA 3MGEA 1VQ8P 2OTJP 2JBGA 2K2QA 1IMPA 5HVCA 2PNGA 3E2DA 4F37A 2MVUA 2EG5A 2KGAA 3DTJA 1EOQA 5KP7B 2L0QA 3H0DA 2CG5B 1VQ4P 2K5XA 4XROA 4M0IA 2PEIA 3G1IA 2E1MA 1VQ7P 4U0BA 4PWVB 2LKIA 1M90Q 2LPKA 4DG9A 1VQ5P 2JU2A 2BUOA 3P05A 2PEKA 2EHTA 1CEIA 3DS5A 1RNIA 4H2XC 2FAEA 2JU1A 5F2OA 2BHVA 2JYGA 2CNRA 3OW2O 1VQ6P 1M6NA 2GZJA 3CCQP 3EJBA 2Z45A 2QA4P 3B4QA 3GJNA 2Z46A
chains in the Genus database with same CATH topology
2XT1A 4COCA 3CC2P 2M8PA 3CMAP 4U0FA 1IUQA 3M1MA 2DGYA 1Q82Q 2PEJA 1K73Q 3I56P 5F2NA 2OTLP 5BS1A 2PY8A 1N8RQ 2PEMA 3CCVP 4XFZA 1M1KQ 1KQSO 1RO2A 2PENA 1VQPP 3CCEP 3G21A 1A43A 1E6JP 1A8OA 1Q86Q 1YJNP 2LF4A 2M8LA 5F2KA 5JPAA 1ZMBA 4U0DA 2P9XA 1Q7YQ 1VQLP 1BAJA 3CC4P 1NJIQ 1KC8Q 2ONTA 3CCRP 3G6EP 3CCSP 4IPYA 1YJ9P 3DS4A 3Q20A 1KD1Q 3VRLC 2JYLA 3H47A 3CMEP 4U0CA 1AUMA 3MGEA 1VQ8P 3CD6P 2OTJP 1VQKP 5HGLA 5HGMA 1VQOP 3E2DA 3H4EA 2L6EA 4GR6A 1YI2P 1W2BO 1VQ9P 3CCLP 2EG5A 1K9MQ 1Q81Q 3CCJP 3B5IA 2OARA 3DTJA 4XRQA 1EIAA 1QVGO 1EOQA 3DS3A 4XFXA 5BS2A 2XXMA 3WBHA 1M6EX 3CCMP 3H0DA 3G1GA 3DS2A 5HGOA 3NTEA 3DS0A 1VQ4P 3I55P 4XROA 3DS1A 4U0AA 4M0IA 3G71P 1VQMP 2EIAA 2PEIA 3G1IA 3DPHA 2E1MA 1JJ2O 3G29A 4U0EA 4GR2A 1VQ7P 4XFYA 4U0BA 4WYMA 1YJWP 2EFJA 3G0VA 3RG6C 2KODA 3CPWO 2Z46A 3HZQA 1QRJA 3CXCO 1M90Q 5I4TG 1YIJP 1K30A 2Z44A 1VQ5P 3G28A 5DCKA 2BUOA 3P05A 2PEQA 2PEOA 1RO0A 2PEKA 2QEXP 1D1DA 1YITP 3DS5A 1RNIA 4PH1A 1M74A 5F2OA 3LRYA 2BHVA 3CC7P 4QNBA 2JYGA 3HYBA 3OW2O 1QVFO 4PH0A 1VQ6P 1M6NA 2M8NA 1S72P 3CCQP 2Z45A 2XV6A 3CCUP 2JO0A 5HGNA 2QA4P 1K8AQ 2CWOA 4COPA 3G4SP 1VQNP 1YHQP 3G26A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5I4T G;  2LF4 A;  2XT1 A;  3DS3 A;  2M8L A;  1A8O A;  5JPA A;  4XFX A;  4U0D A;  3G28 A;  5DCK A;  4COC A;  2M8P A;  1BAJ A;  2XXM A;  2BUO A;  3P05 A;  4U0F A;  2ONT A;  3G1G A;  3DS2 A;  5HGO A;  3NTE A;  1D1D A;  4IPY A;  3DS4 A;  3DS0 A;  3VRL C;  2JYL A;  3H47 A;  4U0C A;  3DS5 A;  4XRO A;  1AUM A;  3DS1 A;  4U0A A;  3MGE A;  4M0I A;  4PH1 A;  2KOD A;  2EIA A;  3G1I A;  5HGL A;  3DPH A;  4COP A;  4XFZ A;  5HGM A;  3LRY A;  3H4E A;  2L6E A;  3G29 A;  4QNB A;  4U0E A;  2JYG A;  4PH0 A;  2M8N A;  4U0B A;  4WYM A;  4XFY A;  2XV6 A;  3G0V A;  2JO0 A;  3G21 A;  1A43 A;  5HGN A;  1E6J P;  3DTJ A;  4XRQ A;  1EIA A;  1QRJ A;  1EOQ A;  3G26 A; 
#chains in the Genus database with same CATH topology
 2MR8 A;  4COC A;  2M8P A;  2L4B A;  2CQ8 A;  2DGY A;  2MR7 A;  2LOL A;  2JQ4 A;  2WPT A;  4XFZ A;  1M1K Q;  2PEN A;  1IMQ A;  1AF8 A;  2GDW A;  2ERH A;  1E6J P;  2MD9 A;  1ZNV A;  2X2B A;  1Q86 Q;  2M8L A;  1NJI Q;  3CCR P;  2FVE A;  1FR2 A;  4IPY A;  5KP8 B;  2NO8 A;  3CME P;  1DV5 A;  1AUM A;  2ROQ A;  3CD6 P;  5HGM A;  1YI2 P;  1W2B O;  3GKL C;  2AFE A;  3CCJ P;  5KP6 B;  2KWL A;  1Z6M A;  4XRQ A;  4R0M A;  1T8K A;  4XFX A;  4MRT C;  2MF4 A;  1M6E X;  2LTE A;  3DS0 A;  4U0A A;  1VQM P;  2EIA A;  3DPH A;  4H2Y C;  1F80 D;  1YJW P;  2EFJ A;  3RG6 C;  2VLQ A;  1K30 A;  2LIU A;  2Z44 A;  2K0X A;  4UHP B;  2PEQ A;  2PEO A;  2MY5 A;  1YIT P;  4HKG A;  2GZF A;  1M74 A;  2FVA A;  2K93 A;  2KG9 A;  1X3O A;  3LRY A;  4PXH B;  1QVF O;  3HYB A;  4PH0 A;  1S72 P;  2N98 A;  2XV6 A;  2KG8 A;  2XZ0 D;  1YHQ P;  2KR5 A;  2FQ2 A;  3CMA P;  2AF8 A;  3M1M A;  2PEJ A;  2XZ1 C;  1K73 Q;  1GXG A;  4IZ6 A;  5F2N A;  2PY8 A;  1N8R Q;  2PEM A;  1VKU A;  1E0H A;  2JB0 A;  1RO2 A;  4H2W C;  1ACP A;  2LIW A;  1A43 A;  1BXI A;  1A8O A;  3CE7 A;  1YJN P;  1MZ8 A;  1VQL P;  5EW5 E;  2ONT A;  3G6E P;  1YJ9 P;  1KD1 Q;  2GZG A;  4U0C A;  2L9F A;  3EJE A;  2KGC A;  1GXH A;  5HGL A;  2AFD A;  1VQ9 P;  2L6E A;  3CCL P;  2VSQ A;  2GYK A;  5EJD A;  2OAR A;  4NEO A;  3DS3 A;  3CCM P;  3G1G A;  3DS2 A;  3NTE A;  4BPG A;  1HQB A;  2N5H A;  2FAD A;  2JAZ A;  2KOS A;  1JJ2 O;  2FQ1 A;  3G29 A;  4U0E A;  4XFY A;  4WYM A;  2L22 A;  3G0V A;  3CPW O;  1QRJ A;  3G28 A;  5DCK A;  1VHN A;  4BPH A;  2FQ0 A;  2VLO A;  1OR5 A;  3CC7 P;  1GPJ A;  1NQ4 A;  2N5I A;  4QNB A;  3RG2 A;  5CZD B;  2JO0 A;  3EJD A;  2CWO A;  3G26 A;  2M5R A;  2XT1 A;  4U0F A;  1L0I A;  2QNW A;  1Q82 Q;  3I56 P;  1UNK A;  2AVA A;  3GZM A;  2FVF A;  2K94 A;  4QKO A;  1AYI A;  5BS1 A;  1KQS O;  2N6Y A;  1VQP P;  3CCE P;  2LL8 A;  2KOP A;  3NY7 B;  2FHS C;  3GZL A;  1EMV A;  2LF4 A;  5JPA A;  1UJZ A;  4U0D A;  3CC4 P;  4CA3 A;  3LMO A;  3DS4 A;  3Q20 A;  4BPF A;  3VRL C;  2JYL A;  1VQK P;  2LML A;  1L0H A;  2K0D X;  1VQO P;  3H4E A;  4GR6 A;  1K9M Q;  2KW2 A;  1Q81 Q;  3B5I A;  1EIA A;  1QVG O;  2VLN A;  5BS2 A;  2XXM A;  3WBH A;  2GDY A;  5HGO A;  2KGD A;  2KGE A;  3I55 P;  3DS1 A;  3G71 P;  2GZI A;  4GR2 A;  2KOD A;  3HZQ A;  3CXC O;  2JGP A;  5I4T G;  1YIJ P;  2GZE A;  2KOR A;  7CEI A;  1RO0 A;  2K0Y A;  2DNW A;  2QEX P;  1D1D A;  3U43 A;  5HV8 A;  1HY8 A;  4PH1 A;  2M8N A;  3CCU P;  5HGN A;  1K8A Q;  4COP A;  3G4S P;  1VQN P;  3CC2 P;  1IUQ A;  2KOO A;  2N50 A;  2MVV A;  2KG6 A;  1DNY A;  2OTL P;  3CCV P;  2N6Z A;  2VLP A;  2KOQ A;  2FAC A;  3G21 A;  2CGQ A;  5F2K A;  1ZMB A;  2P9X A;  2GDX A;  1Q7Y Q;  1BAJ A;  1KC8 Q;  2EHS A;  2K92 A;  3CCS P;  3H47 A;  1KLP A;  3MGE A;  1VQ8 P;  2OTJ P;  2JBG A;  2K2Q A;  1IMP A;  5HVC A;  2PNG A;  3E2D A;  4F37 A;  2MVU A;  2EG5 A;  2KGA A;  3DTJ A;  1EOQ A;  5KP7 B;  2L0Q A;  3H0D A;  2CG5 B;  1VQ4 P;  2K5X A;  4XRO A;  4M0I A;  2PEI A;  3G1I A;  2E1M A;  1VQ7 P;  4U0B A;  4PWV B;  2LKI A;  1M90 Q;  2LPK A;  4DG9 A;  1VQ5 P;  2JU2 A;  2BUO A;  3P05 A;  2PEK A;  2EHT A;  1CEI A;  3DS5 A;  1RNI A;  4H2X C;  2FAE A;  2JU1 A;  5F2O A;  2BHV A;  2JYG A;  2CNR A;  3OW2 O;  1VQ6 P;  1M6N A;  2GZJ A;  3CCQ P;  3EJB A;  2Z45 A;  2QA4 P;  3B4Q A;  3GJN A;  2Z46 A; 
#chains in the Genus database with same CATH homology
 2XT1 A;  4COC A;  3CC2 P;  2M8P A;  3CMA P;  4U0F A;  1IUQ A;  3M1M A;  2DGY A;  1Q82 Q;  2PEJ A;  1K73 Q;  3I56 P;  5F2N A;  2OTL P;  5BS1 A;  2PY8 A;  1N8R Q;  2PEM A;  3CCV P;  4XFZ A;  1M1K Q;  1KQS O;  1RO2 A;  2PEN A;  1VQP P;  3CCE P;  3G21 A;  1A43 A;  1E6J P;  1A8O A;  1Q86 Q;  1YJN P;  2LF4 A;  2M8L A;  5F2K A;  5JPA A;  1ZMB A;  4U0D A;  2P9X A;  1Q7Y Q;  1VQL P;  1BAJ A;  3CC4 P;  1NJI Q;  1KC8 Q;  2ONT A;  3CCR P;  3G6E P;  3CCS P;  4IPY A;  1YJ9 P;  3DS4 A;  3Q20 A;  1KD1 Q;  3VRL C;  2JYL A;  3H47 A;  3CME P;  4U0C A;  1AUM A;  3MGE A;  1VQ8 P;  3CD6 P;  2OTJ P;  1VQK P;  5HGL A;  5HGM A;  1VQO P;  3E2D A;  3H4E A;  2L6E A;  4GR6 A;  1YI2 P;  1W2B O;  1VQ9 P;  3CCL P;  2EG5 A;  1K9M Q;  1Q81 Q;  3CCJ P;  3B5I A;  2OAR A;  3DTJ A;  4XRQ A;  1EIA A;  1QVG O;  1EOQ A;  3DS3 A;  4XFX A;  5BS2 A;  2XXM A;  3WBH A;  1M6E X;  3CCM P;  3H0D A;  3G1G A;  3DS2 A;  5HGO A;  3NTE A;  3DS0 A;  1VQ4 P;  3I55 P;  4XRO A;  3DS1 A;  4U0A A;  4M0I A;  3G71 P;  1VQM P;  2EIA A;  2PEI A;  3G1I A;  3DPH A;  2E1M A;  1JJ2 O;  3G29 A;  4U0E A;  4GR2 A;  1VQ7 P;  4XFY A;  4U0B A;  4WYM A;  1YJW P;  2EFJ A;  3G0V A;  3RG6 C;  2KOD A;  3CPW O;  2Z46 A;  3HZQ A;  1QRJ A;  3CXC O;  1M90 Q;  5I4T G;  1YIJ P;  1K30 A;  2Z44 A;  1VQ5 P;  3G28 A;  5DCK A;  2BUO A;  3P05 A;  2PEQ A;  2PEO A;  1RO0 A;  2PEK A;  2QEX P;  1D1D A;  1YIT P;  3DS5 A;  1RNI A;  4PH1 A;  1M74 A;  5F2O A;  3LRY A;  2BHV A;  3CC7 P;  4QNB A;  2JYG A;  3HYB A;  3OW2 O;  1QVF O;  4PH0 A;  1VQ6 P;  1M6N A;  2M8N A;  1S72 P;  3CCQ P;  2Z45 A;  2XV6 A;  3CCU P;  2JO0 A;  5HGN A;  2QA4 P;  1K8A Q;  2CWO A;  4COP A;  3G4S P;  1VQN P;  1YHQ P;  3G26 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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