1EOQA

Rous sarcoma virus capsid protein: c-terminal domain
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
77
structure length
77
Chain Sequence
MDIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Rous sarcoma virus - prague c
publication title Structure and self-association of the Rous sarcoma virus capsid protein.
pubmed doi rcsb
molecule keywords GAG POLYPROTEIN CAPSID PROTEIN P27
total genus 19
structure length 77
sequence length 77
ec nomenclature
pdb deposition date 2000-03-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 1eoqA00
4PH0A 4IPYA 4QNBA 3G1GA 1A8OA 3G28A 4COCA 2M8PA 2EIAA 1AUMA 2M8NA 3DPHA 4XROA 2XXMA 4XFYA 4XRQA 3VRLC 4COPA 2JO0A 2L6EA 3DTJA 2XV6A 3G0VA 5I4TG 1BAJA 5DCKA 4U0EA 3H4EA 3NTEA 2LF4A 1EIAA 2BUOA 3DS3A 3P05A 3DS4A 4M0IA 4U0BA 5HGOA 5HGMA 3G1IA 4U0FA 2JYLA 3DS2A 4U0DA 3DS1A 2KODA 4PH1A 4XFZA 5HGNA 3LRYA 1EOQA 2XT1A 3G29A 4XFXA 2JYGA 3DS5A 1A43A 4U0CA 5JPAA 3DS0A 3G21A 4WYMA 2M8LA 1QRJA 1D1DA 3MGEA 5HGLA 1E6JP 3G26A 3H47A 2ONTA 4U0AA
chains in the Genus database with same CATH superfamily
2KG9A 4CA3A 1W2BO 2M8NA 2EHSA 3EJEA 2VLQA 3CMEP 4M0IA 2JGPA 2VLNA 4PH1A 3LRYA 1KQSO 1IMQA 2JU2A 1QVFO 4WYMA 1QRJA 2FVEA 2PY8A 3M1MA 2KGEA 1KC8Q 2M8PA 4XRQA 2OTJP 3P05A 2BUOA 2L9FA 2XZ0D 2VSQA 2XT1A 1VQ4P 2JYGA 1VQ9P 2CGQA 1VQ7P 3CE7A 2KG8A 3CPWO 2OARA 3CCEP 2MR8A 3CCVP 1VQKP 3GZMA 1YHQP 2JO0A 1ZMBA 1M6NA 2LL8A 1K73Q 5HVCA 2L22A 2Z46A 2DNWA 2N6YA 3CCMP 1YJWP 1RO0A 3E2DA 3Q20A 3G26A 5KP6B 3CC4P 2CWOA 5EW5E 5DCKA 4PXHB 1ACPA 1HQBA 2K0DX 1GPJA 2GZJA 2KR5A 3G1IA 5KP8B 2FQ2A 2N5HA 1M74A 1T8KA 2L0QA 2ROQA 1L0HA 2CNRA 2PEJA 2K92A 2ERHA 3EJBA 2L6EA 2N6ZA 2MR7A 4U0EA 5HGOA 2X2BA 5HV8A 7CEIA 2KODA 1S72P 1JJ2O 2BHVA 3H0DA 3B5IA 2PEMA 1D1DA 2MD9A 4IZ6A 1BXIA 2GYKA 2LMLA 1IUQA 4COPA 3G0VA 1EIAA 3LMOA 2JYLA 2LIWA 1YJ9P 2AVAA 3MGEA 3CCJP 3CCLP 1VQMP 3HYBA 3VRLC 2KGCA 1VQLP 2AF8A 2GZIA 2VLPA 1MZ8A 3DS3A 2QEXP 1NJIQ 3I56P 3OW2O 2JQ4A 2K0XA 4H2XC 1VHNA 2N5IA 2K0YA 1RO2A 1E0HA 1M1KQ 1FR2A 2JBGA 4IPYA 1VQ6P 5CZDB 4XROA 1M6EX 4MRTC 4XFYA 2FADA 4UHPB 3CXCO 2KOPA 3H4EA 5F2KA 1KLPA 2KW2A 2Z45A 3G29A 4U0CA 1Z6MA 2GZEA 4QKOA 3U43A 5EJDA 3H47A 1YITP 2K94A 2LKIA 2M5RA 3DTJA 5I4TG 3GJNA 5BS1A 1EMVA 2WPTA 3DS4A 1K8AQ 4U0FA 3CCSP 2Z44A 4HKGA 1EOQA 2QA4P 2MVVA 4BPFA 4GR2A 3DS0A 3CCQP 1VQPP 1AYIA 5F2OA 4BPHA 2ONTA 1GXHA 3I55P 1KD1Q 1VQ8P 2LPKA 2OTLP 2FHSC 5HGMA 2FVFA 2EHTA 1Q86Q 1VQOP 2JB0A 1K30A 1E6JP 1ZNVA 1L0IA 1HY8A 1QVGO 2N50A 1Q81Q 1UJZA 2MY5A 2LOLA 3G6EP 3CCUP 4DG9A 2K5XA 3DS1A 2FVAA 4NEOA 4H2WC 5HGLA 2PEQA 4U0AA 4PH0A 4QNBA 3G28A 1AUMA 2XXMA 3NTEA 3GKLC 5KP7B 2KWLA 4XFZA 4XFXA 3DS5A 2JU1A 4BPGA 1NQ4A 3G21A 1DNYA 3CC2P 2KOSA 1Q82Q 2LIUA 2CG5B 2PEKA 4COCA 3G71P 2E1MA 3HZQA 1K9MQ 1YJNP 2P9XA 4H2YC 3G4SP 4GR6A 5HGNA 1Q7YQ 1RNIA 3GZLA 1A43A 2KOOA 5JPAA 4R0MA 2M8LA 3RG6C 3EJDA 2FAEA 2DGYA 3G1GA 2K2QA 2GZGA 3DPHA 2EFJA 2XV6A 1N8RQ 1VQNP 4U0BA 3DS2A 4U0DA 1AF8A 1VQ5P 2PEIA 2MVUA 2KGAA 2EG5A 1YIJP 1VKUA 2KORA 2MF4A 3NY7B 1GXGA 2GDYA 2AFEA 1A8OA 2EIAA 1OR5A 2FACA 1UNKA 2L4BA 2LF4A 2FQ0A 4F37A 3RG2A 2JAZA 1IMPA 3WBHA 2XZ1C 3CC7P 2KG6A 5F2NA 2CQ8A 2PNGA 1M90Q 1X3OA 2VLOA 3CD6P 2PEOA 2FQ1A 2GDXA 2N98A 3B4QA 3CCRP 2K93A 2NO8A 1BAJA 1F80D 2KGDA 1DV5A 5BS2A 2QNWA 4PWVB 1CEIA 1YI2P 2KOQA 2GDWA 2AFDA 2PENA 2LTEA 2GZFA 3CMAP
chains in the Genus database with same CATH topology
2PEKA 4COCA 1W2BO 3G71P 2M8NA 2E1MA 3HZQA 1K9MQ 1YJNP 2L6EA 3DTJA 5I4TG 4U0EA 2P9XA 5BS1A 3CMEP 4M0IA 3DS4A 5HGOA 1K8AQ 4U0FA 3CCSP 3G4SP 4GR6A 4PH1A 2KODA 2Z44A 1RNIA 5HGNA 1Q7YQ 3LRYA 1S72P 1EOQA 2QA4P 1KQSO 1JJ2O 2BHVA 3H0DA 1A43A 1QVFO 4GR2A 3DS0A 5JPAA 3B5IA 3CCQP 1VQPP 4WYMA 2PEMA 2M8LA 1QRJA 2PY8A 3RG6C 1D1DA 5F2OA 3M1MA 2ONTA 1KC8Q 2DGYA 3G1GA 3I55P 1IUQA 2M8PA 4COPA 3DPHA 1KD1Q 4XRQA 1VQ8P 2EFJA 2XV6A 3G0VA 1N8RQ 1VQNP 2OTLP 2OTJP 3P05A 1EIAA 2BUOA 4U0BA 5HGMA 2JYLA 3DS2A 4U0DA 1VQ5P 2PEIA 1Q86Q 2XT1A 2EG5A 1YJ9P 1VQ4P 2JYGA 1VQOP 1VQ9P 1YIJP 1VQ7P 3MGEA 3CPWO 1K30A 2OARA 1E6JP 3CCEP 3CCJP 3CCVP 1QVGO 1A8OA 1Q81Q 1VQKP 3CCLP 2EIAA 1VQMP 1YHQP 3HYBA 3VRLC 1VQLP 2JO0A 1ZMBA 3G6EP 2LF4A 1M6NA 3DS3A 2QEXP 3CCUP 1K73Q 1NJIQ 2Z46A 3DS1A 3I56P 3CCMP 3OW2O 3WBHA 1YJWP 1RO0A 3E2DA 3CC7P 2PEJA 5HGLA 5F2NA 3Q20A 3G26A 1RO2A 1M1KQ 2PEQA 4U0AA 1M90Q 4PH0A 4IPYA 1VQ6P 3CD6P 4QNBA 2PEOA 3G28A 1AUMA 4XROA 1M6EX 2CWOA 2XXMA 4XFYA 3CCRP 3CC4P 3CXCO 1BAJA 5DCKA 3H4EA 3NTEA 5F2KA 3G1IA 5BS2A 2Z45A 4XFZA 1YI2P 3G29A 4XFXA 3DS5A 4U0CA 1M74A 3G21A 2PENA 3CC2P 1Q82Q 3H47A 1YITP 3CMAP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PH0 A;  4IPY A;  4QNB A;  3G1G A;  1A8O A;  3G28 A;  4COC A;  2M8P A;  2EIA A;  1AUM A;  2M8N A;  3DPH A;  4XRO A;  2XXM A;  4XFY A;  4XRQ A;  3VRL C;  4COP A;  2JO0 A;  2L6E A;  3DTJ A;  2XV6 A;  3G0V A;  5I4T G;  1BAJ A;  5DCK A;  4U0E A;  3H4E A;  3NTE A;  2LF4 A;  1EIA A;  2BUO A;  3DS3 A;  3P05 A;  3DS4 A;  4M0I A;  4U0B A;  5HGO A;  5HGM A;  3G1I A;  4U0F A;  2JYL A;  3DS2 A;  4U0D A;  3DS1 A;  2KOD A;  4PH1 A;  4XFZ A;  5HGN A;  3LRY A;  1EOQ A;  2XT1 A;  3G29 A;  4XFX A;  2JYG A;  3DS5 A;  1A43 A;  4U0C A;  5JPA A;  3DS0 A;  3G21 A;  4WYM A;  2M8L A;  1QRJ A;  1D1D A;  3MGE A;  5HGL A;  1E6J P;  3G26 A;  3H47 A;  2ONT A;  4U0A A; 
#chains in the Genus database with same CATH topology
 2KG9 A;  4CA3 A;  1W2B O;  2M8N A;  2EHS A;  3EJE A;  2VLQ A;  3CME P;  4M0I A;  2JGP A;  2VLN A;  4PH1 A;  3LRY A;  1KQS O;  1IMQ A;  2JU2 A;  1QVF O;  4WYM A;  1QRJ A;  2FVE A;  2PY8 A;  3M1M A;  2KGE A;  1KC8 Q;  2M8P A;  4XRQ A;  2OTJ P;  3P05 A;  2BUO A;  2L9F A;  2XZ0 D;  2VSQ A;  2XT1 A;  1VQ4 P;  2JYG A;  1VQ9 P;  2CGQ A;  1VQ7 P;  3CE7 A;  2KG8 A;  3CPW O;  2OAR A;  3CCE P;  2MR8 A;  3CCV P;  1VQK P;  3GZM A;  1YHQ P;  2JO0 A;  1ZMB A;  1M6N A;  2LL8 A;  1K73 Q;  5HVC A;  2L22 A;  2Z46 A;  2DNW A;  2N6Y A;  3CCM P;  1YJW P;  1RO0 A;  3E2D A;  3Q20 A;  3G26 A;  5KP6 B;  3CC4 P;  2CWO A;  5EW5 E;  5DCK A;  4PXH B;  1ACP A;  1HQB A;  2K0D X;  1GPJ A;  2GZJ A;  2KR5 A;  3G1I A;  5KP8 B;  2FQ2 A;  2N5H A;  1M74 A;  1T8K A;  2L0Q A;  2ROQ A;  1L0H A;  2CNR A;  2PEJ A;  2K92 A;  2ERH A;  3EJB A;  2L6E A;  2N6Z A;  2MR7 A;  4U0E A;  5HGO A;  2X2B A;  5HV8 A;  7CEI A;  2KOD A;  1S72 P;  1JJ2 O;  2BHV A;  3H0D A;  3B5I A;  2PEM A;  1D1D A;  2MD9 A;  4IZ6 A;  1BXI A;  2GYK A;  2LML A;  1IUQ A;  4COP A;  3G0V A;  1EIA A;  3LMO A;  2JYL A;  2LIW A;  1YJ9 P;  2AVA A;  3MGE A;  3CCJ P;  3CCL P;  1VQM P;  3HYB A;  3VRL C;  2KGC A;  1VQL P;  2AF8 A;  2GZI A;  2VLP A;  1MZ8 A;  3DS3 A;  2QEX P;  1NJI Q;  3I56 P;  3OW2 O;  2JQ4 A;  2K0X A;  4H2X C;  1VHN A;  2N5I A;  2K0Y A;  1RO2 A;  1E0H A;  1M1K Q;  1FR2 A;  2JBG A;  4IPY A;  1VQ6 P;  5CZD B;  4XRO A;  1M6E X;  4MRT C;  4XFY A;  2FAD A;  4UHP B;  3CXC O;  2KOP A;  3H4E A;  5F2K A;  1KLP A;  2KW2 A;  2Z45 A;  3G29 A;  4U0C A;  1Z6M A;  2GZE A;  4QKO A;  3U43 A;  5EJD A;  3H47 A;  1YIT P;  2K94 A;  2LKI A;  2M5R A;  3DTJ A;  5I4T G;  3GJN A;  5BS1 A;  1EMV A;  2WPT A;  3DS4 A;  1K8A Q;  4U0F A;  3CCS P;  2Z44 A;  4HKG A;  1EOQ A;  2QA4 P;  2MVV A;  4BPF A;  4GR2 A;  3DS0 A;  3CCQ P;  1VQP P;  1AYI A;  5F2O A;  4BPH A;  2ONT A;  1GXH A;  3I55 P;  1KD1 Q;  1VQ8 P;  2LPK A;  2OTL P;  2FHS C;  5HGM A;  2FVF A;  2EHT A;  1Q86 Q;  1VQO P;  2JB0 A;  1K30 A;  1E6J P;  1ZNV A;  1L0I A;  1HY8 A;  1QVG O;  2N50 A;  1Q81 Q;  1UJZ A;  2MY5 A;  2LOL A;  3G6E P;  3CCU P;  4DG9 A;  2K5X A;  3DS1 A;  2FVA A;  4NEO A;  4H2W C;  5HGL A;  2PEQ A;  4U0A A;  4PH0 A;  4QNB A;  3G28 A;  1AUM A;  2XXM A;  3NTE A;  3GKL C;  5KP7 B;  2KWL A;  4XFZ A;  4XFX A;  3DS5 A;  2JU1 A;  4BPG A;  1NQ4 A;  3G21 A;  1DNY A;  3CC2 P;  2KOS A;  1Q82 Q;  2LIU A;  2CG5 B;  2PEK A;  4COC A;  3G71 P;  2E1M A;  3HZQ A;  1K9M Q;  1YJN P;  2P9X A;  4H2Y C;  3G4S P;  4GR6 A;  5HGN A;  1Q7Y Q;  1RNI A;  3GZL A;  1A43 A;  2KOO A;  5JPA A;  4R0M A;  2M8L A;  3RG6 C;  3EJD A;  2FAE A;  2DGY A;  3G1G A;  2K2Q A;  2GZG A;  3DPH A;  2EFJ A;  2XV6 A;  1N8R Q;  1VQN P;  4U0B A;  3DS2 A;  4U0D A;  1AF8 A;  1VQ5 P;  2PEI A;  2MVU A;  2KGA A;  2EG5 A;  1YIJ P;  1VKU A;  2KOR A;  2MF4 A;  3NY7 B;  1GXG A;  2GDY A;  2AFE A;  1A8O A;  2EIA A;  1OR5 A;  2FAC A;  1UNK A;  2L4B A;  2LF4 A;  2FQ0 A;  4F37 A;  3RG2 A;  2JAZ A;  1IMP A;  3WBH A;  2XZ1 C;  3CC7 P;  2KG6 A;  5F2N A;  2CQ8 A;  2PNG A;  1M90 Q;  1X3O A;  2VLO A;  3CD6 P;  2PEO A;  2FQ1 A;  2GDX A;  2N98 A;  3B4Q A;  3CCR P;  2K93 A;  2NO8 A;  1BAJ A;  1F80 D;  2KGD A;  1DV5 A;  5BS2 A;  2QNW A;  4PWV B;  1CEI A;  1YI2 P;  2KOQ A;  2GDW A;  2AFD A;  2PEN A;  2LTE A;  2GZF A;  3CMA P; 
#chains in the Genus database with same CATH homology
 2PEK A;  4COC A;  1W2B O;  3G71 P;  2M8N A;  2E1M A;  3HZQ A;  1K9M Q;  1YJN P;  2L6E A;  3DTJ A;  5I4T G;  4U0E A;  2P9X A;  5BS1 A;  3CME P;  4M0I A;  3DS4 A;  5HGO A;  1K8A Q;  4U0F A;  3CCS P;  3G4S P;  4GR6 A;  4PH1 A;  2KOD A;  2Z44 A;  1RNI A;  5HGN A;  1Q7Y Q;  3LRY A;  1S72 P;  1EOQ A;  2QA4 P;  1KQS O;  1JJ2 O;  2BHV A;  3H0D A;  1A43 A;  1QVF O;  4GR2 A;  3DS0 A;  5JPA A;  3B5I A;  3CCQ P;  1VQP P;  4WYM A;  2PEM A;  2M8L A;  1QRJ A;  2PY8 A;  3RG6 C;  1D1D A;  5F2O A;  3M1M A;  2ONT A;  1KC8 Q;  2DGY A;  3G1G A;  3I55 P;  1IUQ A;  2M8P A;  4COP A;  3DPH A;  1KD1 Q;  4XRQ A;  1VQ8 P;  2EFJ A;  2XV6 A;  3G0V A;  1N8R Q;  1VQN P;  2OTL P;  2OTJ P;  3P05 A;  1EIA A;  2BUO A;  4U0B A;  5HGM A;  2JYL A;  3DS2 A;  4U0D A;  1VQ5 P;  2PEI A;  1Q86 Q;  2XT1 A;  2EG5 A;  1YJ9 P;  1VQ4 P;  2JYG A;  1VQO P;  1VQ9 P;  1YIJ P;  1VQ7 P;  3MGE A;  3CPW O;  1K30 A;  2OAR A;  1E6J P;  3CCE P;  3CCJ P;  3CCV P;  1QVG O;  1A8O A;  1Q81 Q;  1VQK P;  3CCL P;  2EIA A;  1VQM P;  1YHQ P;  3HYB A;  3VRL C;  1VQL P;  2JO0 A;  1ZMB A;  3G6E P;  2LF4 A;  1M6N A;  3DS3 A;  2QEX P;  3CCU P;  1K73 Q;  1NJI Q;  2Z46 A;  3DS1 A;  3I56 P;  3CCM P;  3OW2 O;  3WBH A;  1YJW P;  1RO0 A;  3E2D A;  3CC7 P;  2PEJ A;  5HGL A;  5F2N A;  3Q20 A;  3G26 A;  1RO2 A;  1M1K Q;  2PEQ A;  4U0A A;  1M90 Q;  4PH0 A;  4IPY A;  1VQ6 P;  3CD6 P;  4QNB A;  2PEO A;  3G28 A;  1AUM A;  4XRO A;  1M6E X;  2CWO A;  2XXM A;  4XFY A;  3CCR P;  3CC4 P;  3CXC O;  1BAJ A;  5DCK A;  3H4E A;  3NTE A;  5F2K A;  3G1I A;  5BS2 A;  2Z45 A;  4XFZ A;  1YI2 P;  3G29 A;  4XFX A;  3DS5 A;  4U0C A;  1M74 A;  3G21 A;  2PEN A;  3CC2 P;  1Q82 Q;  3H47 A;  1YIT P;  3CMA P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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