3DTJA

Hiv-1 capsid c-terminal domain mutant (e187a)
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
73
structure length
73
Chain Sequence
SILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTATLLVQNANPDCKTILKALGPGATLEEMMTACQGV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Residues in the HIV-1 Capsid Assembly Inhibitor Binding Site Are Essential for Maintaining the Assembly-competent Quaternary Structure of the Capsid Protein.
pubmed doi rcsb
molecule tags Viral protein
source organism Human immunodeficiency virus 1
molecule keywords HIV-1 capsid protein
total genus 27
structure length 73
sequence length 73
chains with identical sequence B, C, D
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2008-07-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3dtjA00
1AUMA 2JYLA 3DS1A 3G0VA 2XT1A 4U0EA 1A43A 3DTJA 3NTEA 4XROA 3DS3A 3G1IA 3G21A 4XFXA 5HGLA 4XFYA 2M8NA 3DS4A 4U0DA 5HGNA 1QRJA 4QNBA 4XRQA 2ONTA 2LF4A 3H47A 3DS2A 2M8LA 4COPA 4U0FA 2L6EA 3H4EA 2XXMA 3G26A 3G1GA 2KODA 3G28A 3G29A 2JYGA 2BUOA 4WYMA 5I4TG 3DS0A 4PH0A 3DS5A 5HGMA 2JO0A 2EIAA 1E6JP 1BAJA 3P05A 4M0IA 4COCA 4U0CA 5DCKA 4IPYA 4XFZA 4PH1A 3VRLC 2XV6A 3LRYA 5JPAA 3DPHA 1D1DA 3MGEA 1A8OA 1EOQA 4U0AA 1EIAA 4U0BA 5HGOA 2M8PA
chains in the Genus database with same CATH superfamily
2JYLA 1VQLP 2GZGA 5HGNA 2K5XA 2KOSA 1Z6MA 2MR7A 1OR5A 2CG5B 2NO8A 3CC4P 5HV8A 2PEIA 3Q20A 2LMLA 2PEQA 1RO2A 2XV6A 3CC7P 2GDYA 5KP7B 2L9FA 3CD6P 1M6EX 3M1MA 4PWVB 3G4SP 2P9XA 3U43A 1YJWP 1KC8Q 2KWLA 1K8AQ 4H2YC 2AVAA 1BAJA 4H2XC 1D1DA 2N5IA 2K94A 1X3OA 1L0HA 2FQ0A 2N6YA 1VQ8P 3DS2A 4MRTC 1Q86Q 2PEMA 2EHTA 2PEKA 2K0YA 3HYBA 2K92A 2MD9A 2XZ1C 2N6ZA 2KGEA 2WPTA 3CCVP 4COCA 4XFZA 2JU1A 4GR2A 3MGEA 1EOQA 2JBGA 3LMOA 1NJIQ 4XFXA 2BHVA 1RO0A 3CMEP 2CWOA 4QNBA 1FR2A 2FHSC 2ONTA 5EJDA 2QA4P 2FVAA 1YIJP 3G1GA 1M6NA 2X2BA 3GJNA 4U0CA 5HGOA 2XZ0D 1UJZA 3CPWO 3G0VA 3DS3A 2FAEA 4NEOA 1VQ9P 2KGAA 2VLPA 1QRJA 3B5IA 3CXCO 2GZEA 2KG9A 3CE7A 3I55P 2MF4A 3B4QA 3G28A 1VQ4P 4DG9A 5HGMA 1E6JP 2EHSA 2LL8A 1M90Q 4PH1A 1GXGA 5F2NA 3CCRP 2MR8A 1QVGO 4U0BA 1VHNA 2LKIA 1YI2P 2JU2A 5HGLA 2CGQA 2N98A 2GZJA 5CZDB 2KGDA 3HZQA 2KOPA 5I4TG 3I56P 2MVVA 2PY8A 5DCKA 1DNYA 2CNRA 2KG8A 1GXHA 1A8OA 1EIAA 2ROQA 1VQ5P 2LOLA 2XT1A 1BXIA 1A43A 3CCQP 1K9MQ 1ZNVA 4PXHB 3H4EA 3CCUP 5BS2A 3P05A 5HVCA 2PEOA 1MZ8A 5KP8B 2FVFA 2AFDA 2M8PA 1HY8A 3DTJA 2L0QA 2VLNA 2M8NA 4BPGA 3H47A 2VLQA 1YHQP 2Z46A 5EW5E 1IMQA 1S72P 2KGCA 2FQ2A 1RNIA 1NQ4A 3GZMA 1HQBA 2Z45A 4U0DA 2ERHA 3G71P 3WBHA 2N5HA 2K2QA 2JB0A 1E0HA 3G26A 3G29A 1K73Q 3DS5A 3NY7B 1IMPA 4IPYA 1GPJA 4U0AA 1JJ2O 4QKOA 1CEIA 1T8KA 1Q81Q 3RG6C 2LF4A 1YJNP 4COPA 3CCMP 5F2KA 2L6EA 2PENA 2KODA 2JYGA 1VQMP 4H2WC 1KD1Q 7CEIA 3DS1A 2GDWA 3NTEA 2OTJP 3G21A 3H0DA 1ZMBA 2EG5A 2AFEA 3G6EP 2K0XA 2M8LA 2KORA 4U0FA 2MY5A 3EJDA 2AF8A 2K93A 1UNKA 3RG2A 2GZIA 1L0IA 2EFJA 1Q7YQ 2OTLP 4HKGA 1F80D 2LPKA 1VQNP 2LTEA 3GKLC 4BPHA 1AUMA 4U0EA 1QVFO 1AYIA 2KOOA 2KW2A 3CC2P 4GR6A 1Q82Q 5BS1A 1VQKP 2KR5A 1M1KQ 1N8RQ 2K0DX 2VSQA 4XRQA 2XXMA 2QNWA 2PEJA 4CA3A 2JGPA 4PH0A 3E2DA 1EMVA 1W2BO 4M0IA 2GZFA 2FADA 2L4BA 2LIUA 2DNWA 1ACPA 1VQ6P 3GZLA 1M74A 2KOQA 1YITP 4R0MA 3EJBA 3CCLP 2GYKA 1K30A 4WYMA 2BUOA 2N50A 2GDXA 1VQ7P 2OARA 3DPHA 2FACA 3CCJP 2CQ8A 1IUQA 2MVUA 1VQOP 5KP6B 4XFYA 2Z44A 3DS4A 1KLPA 4BPFA 3OW2O 2QEXP 2FQ1A 3DS0A 1DV5A 3EJEA 3CMAP 2PNGA 3CCEP 2JO0A 2EIAA 2M5RA 3VRLC 2JQ4A 3LRYA 2LIWA 2E1MA 4XROA 3G1IA 2DGYA 4UHPB 2JAZA 5F2OA 4F37A 3CCSP 1KQSO 1VQPP 1VKUA 2KG6A 2FVEA 2L22A 4IZ6A 2VLOA 1YJ9P 1AF8A 5JPAA
chains in the Genus database with same CATH topology
3CPWO 2JYLA 3G0VA 2Z45A 3DS3A 1VQLP 1VQ9P 4U0DA 5HGNA 1QRJA 3G71P 3B5IA 3CXCO 3WBHA 4XRQA 3I55P 2XXMA 3G26A 3CC4P 2PEJA 3G28A 3G29A 2PEIA 4PH0A 3Q20A 1K73Q 1VQ4P 3DS5A 3E2DA 1W2BO 5HGMA 1E6JP 4M0IA 2PEQA 4IPYA 1M90Q 4PH1A 1RO2A 2XV6A 3CC7P 5F2NA 4U0AA 3CCRP 1QVGO 1JJ2O 4U0BA 1YI2P 5HGLA 3CD6P 1M6EX 3M1MA 3G4SP 1Q81Q 3RG6C 2P9XA 1VQ6P 1YJWP 1M74A 2LF4A 1YJNP 4COPA 1YITP 3CCMP 5F2KA 1KC8Q 2L6EA 2PENA 1K8AQ 3CCLP 1K30A 3HZQA 2KODA 4WYMA 2JYGA 2BUOA 5I4TG 1VQMP 3I56P 1VQ7P 1BAJA 2OARA 2PY8A 5DCKA 1KD1Q 3DPHA 1D1DA 1A8OA 1EIAA 3CCJP 1VQ5P 3DS1A 1IUQA 2XT1A 1A43A 3NTEA 1VQOP 2OTJP 3CCQP 3G21A 1K9MQ 4XFYA 3H0DA 2Z44A 1ZMBA 2EG5A 3DS4A 3G6EP 1VQ8P 3DS2A 2M8LA 1Q86Q 2PEMA 3OW2O 4U0FA 3H4EA 2PEKA 2QEXP 3CCUP 3HYBA 3DS0A 3CMAP 2EFJA 1Q7YQ 3CCEP 2JO0A 2EIAA 5BS2A 3P05A 3CCVP 4COCA 2OTLP 2PEOA 4XFZA 3VRLC 3LRYA 4GR2A 3MGEA 1EOQA 1VQNP 1NJIQ 2M8PA 1AUMA 4U0EA 2E1MA 3DTJA 4XROA 3G1IA 4XFXA 1QVFO 2BHVA 1RO0A 2DGYA 2M8NA 3CMEP 2CWOA 5F2OA 4QNBA 3CCSP 3CC2P 2ONTA 3H47A 4GR6A 1KQSO 1YHQP 2QA4P 1YIJP 1VQPP 3G1GA 1M6NA 1Q82Q 2Z46A 5BS1A 1VQKP 4U0CA 1S72P 1YJ9P 5JPAA 1RNIA 1M1KQ 1N8RQ 5HGOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AUM A;  2JYL A;  3DS1 A;  3G0V A;  2XT1 A;  4U0E A;  1A43 A;  3DTJ A;  3NTE A;  4XRO A;  3DS3 A;  3G1I A;  3G21 A;  4XFX A;  5HGL A;  4XFY A;  2M8N A;  3DS4 A;  4U0D A;  5HGN A;  1QRJ A;  4QNB A;  4XRQ A;  2ONT A;  2LF4 A;  3H47 A;  3DS2 A;  2M8L A;  4COP A;  4U0F A;  2L6E A;  3H4E A;  2XXM A;  3G26 A;  3G1G A;  2KOD A;  3G28 A;  3G29 A;  2JYG A;  2BUO A;  4WYM A;  5I4T G;  3DS0 A;  4PH0 A;  3DS5 A;  5HGM A;  2JO0 A;  2EIA A;  1E6J P;  1BAJ A;  3P05 A;  4M0I A;  4COC A;  4U0C A;  5DCK A;  4IPY A;  4XFZ A;  4PH1 A;  3VRL C;  2XV6 A;  3LRY A;  5JPA A;  3DPH A;  1D1D A;  3MGE A;  1A8O A;  1EOQ A;  4U0A A;  1EIA A;  4U0B A;  5HGO A;  2M8P A; 
#chains in the Genus database with same CATH topology
 2JYL A;  1VQL P;  2GZG A;  5HGN A;  2K5X A;  2KOS A;  1Z6M A;  2MR7 A;  1OR5 A;  2CG5 B;  2NO8 A;  3CC4 P;  5HV8 A;  2PEI A;  3Q20 A;  2LML A;  2PEQ A;  1RO2 A;  2XV6 A;  3CC7 P;  2GDY A;  5KP7 B;  2L9F A;  3CD6 P;  1M6E X;  3M1M A;  4PWV B;  3G4S P;  2P9X A;  3U43 A;  1YJW P;  1KC8 Q;  2KWL A;  1K8A Q;  4H2Y C;  2AVA A;  1BAJ A;  4H2X C;  1D1D A;  2N5I A;  2K94 A;  1X3O A;  1L0H A;  2FQ0 A;  2N6Y A;  1VQ8 P;  3DS2 A;  4MRT C;  1Q86 Q;  2PEM A;  2EHT A;  2PEK A;  2K0Y A;  3HYB A;  2K92 A;  2MD9 A;  2XZ1 C;  2N6Z A;  2KGE A;  2WPT A;  3CCV P;  4COC A;  4XFZ A;  2JU1 A;  4GR2 A;  3MGE A;  1EOQ A;  2JBG A;  3LMO A;  1NJI Q;  4XFX A;  2BHV A;  1RO0 A;  3CME P;  2CWO A;  4QNB A;  1FR2 A;  2FHS C;  2ONT A;  5EJD A;  2QA4 P;  2FVA A;  1YIJ P;  3G1G A;  1M6N A;  2X2B A;  3GJN A;  4U0C A;  5HGO A;  2XZ0 D;  1UJZ A;  3CPW O;  3G0V A;  3DS3 A;  2FAE A;  4NEO A;  1VQ9 P;  2KGA A;  2VLP A;  1QRJ A;  3B5I A;  3CXC O;  2GZE A;  2KG9 A;  3CE7 A;  3I55 P;  2MF4 A;  3B4Q A;  3G28 A;  1VQ4 P;  4DG9 A;  5HGM A;  1E6J P;  2EHS A;  2LL8 A;  1M90 Q;  4PH1 A;  1GXG A;  5F2N A;  3CCR P;  2MR8 A;  1QVG O;  4U0B A;  1VHN A;  2LKI A;  1YI2 P;  2JU2 A;  5HGL A;  2CGQ A;  2N98 A;  2GZJ A;  5CZD B;  2KGD A;  3HZQ A;  2KOP A;  5I4T G;  3I56 P;  2MVV A;  2PY8 A;  5DCK A;  1DNY A;  2CNR A;  2KG8 A;  1GXH A;  1A8O A;  1EIA A;  2ROQ A;  1VQ5 P;  2LOL A;  2XT1 A;  1BXI A;  1A43 A;  3CCQ P;  1K9M Q;  1ZNV A;  4PXH B;  3H4E A;  3CCU P;  5BS2 A;  3P05 A;  5HVC A;  2PEO A;  1MZ8 A;  5KP8 B;  2FVF A;  2AFD A;  2M8P A;  1HY8 A;  3DTJ A;  2L0Q A;  2VLN A;  2M8N A;  4BPG A;  3H47 A;  2VLQ A;  1YHQ P;  2Z46 A;  5EW5 E;  1IMQ A;  1S72 P;  2KGC A;  2FQ2 A;  1RNI A;  1NQ4 A;  3GZM A;  1HQB A;  2Z45 A;  4U0D A;  2ERH A;  3G71 P;  3WBH A;  2N5H A;  2K2Q A;  2JB0 A;  1E0H A;  3G26 A;  3G29 A;  1K73 Q;  3DS5 A;  3NY7 B;  1IMP A;  4IPY A;  1GPJ A;  4U0A A;  1JJ2 O;  4QKO A;  1CEI A;  1T8K A;  1Q81 Q;  3RG6 C;  2LF4 A;  1YJN P;  4COP A;  3CCM P;  5F2K A;  2L6E A;  2PEN A;  2KOD A;  2JYG A;  1VQM P;  4H2W C;  1KD1 Q;  7CEI A;  3DS1 A;  2GDW A;  3NTE A;  2OTJ P;  3G21 A;  3H0D A;  1ZMB A;  2EG5 A;  2AFE A;  3G6E P;  2K0X A;  2M8L A;  2KOR A;  4U0F A;  2MY5 A;  3EJD A;  2AF8 A;  2K93 A;  1UNK A;  3RG2 A;  2GZI A;  1L0I A;  2EFJ A;  1Q7Y Q;  2OTL P;  4HKG A;  1F80 D;  2LPK A;  1VQN P;  2LTE A;  3GKL C;  4BPH A;  1AUM A;  4U0E A;  1QVF O;  1AYI A;  2KOO A;  2KW2 A;  3CC2 P;  4GR6 A;  1Q82 Q;  5BS1 A;  1VQK P;  2KR5 A;  1M1K Q;  1N8R Q;  2K0D X;  2VSQ A;  4XRQ A;  2XXM A;  2QNW A;  2PEJ A;  4CA3 A;  2JGP A;  4PH0 A;  3E2D A;  1EMV A;  1W2B O;  4M0I A;  2GZF A;  2FAD A;  2L4B A;  2LIU A;  2DNW A;  1ACP A;  1VQ6 P;  3GZL A;  1M74 A;  2KOQ A;  1YIT P;  4R0M A;  3EJB A;  3CCL P;  2GYK A;  1K30 A;  4WYM A;  2BUO A;  2N50 A;  2GDX A;  1VQ7 P;  2OAR A;  3DPH A;  2FAC A;  3CCJ P;  2CQ8 A;  1IUQ A;  2MVU A;  1VQO P;  5KP6 B;  4XFY A;  2Z44 A;  3DS4 A;  1KLP A;  4BPF A;  3OW2 O;  2QEX P;  2FQ1 A;  3DS0 A;  1DV5 A;  3EJE A;  3CMA P;  2PNG A;  3CCE P;  2JO0 A;  2EIA A;  2M5R A;  3VRL C;  2JQ4 A;  3LRY A;  2LIW A;  2E1M A;  4XRO A;  3G1I A;  2DGY A;  4UHP B;  2JAZ A;  5F2O A;  4F37 A;  3CCS P;  1KQS O;  1VQP P;  1VKU A;  2KG6 A;  2FVE A;  2L22 A;  4IZ6 A;  2VLO A;  1YJ9 P;  1AF8 A;  5JPA A; 
#chains in the Genus database with same CATH homology
 3CPW O;  2JYL A;  3G0V A;  2Z45 A;  3DS3 A;  1VQL P;  1VQ9 P;  4U0D A;  5HGN A;  1QRJ A;  3G71 P;  3B5I A;  3CXC O;  3WBH A;  4XRQ A;  3I55 P;  2XXM A;  3G26 A;  3CC4 P;  2PEJ A;  3G28 A;  3G29 A;  2PEI A;  4PH0 A;  3Q20 A;  1K73 Q;  1VQ4 P;  3DS5 A;  3E2D A;  1W2B O;  5HGM A;  1E6J P;  4M0I A;  2PEQ A;  4IPY A;  1M90 Q;  4PH1 A;  1RO2 A;  2XV6 A;  3CC7 P;  5F2N A;  4U0A A;  3CCR P;  1QVG O;  1JJ2 O;  4U0B A;  1YI2 P;  5HGL A;  3CD6 P;  1M6E X;  3M1M A;  3G4S P;  1Q81 Q;  3RG6 C;  2P9X A;  1VQ6 P;  1YJW P;  1M74 A;  2LF4 A;  1YJN P;  4COP A;  1YIT P;  3CCM P;  5F2K A;  1KC8 Q;  2L6E A;  2PEN A;  1K8A Q;  3CCL P;  1K30 A;  3HZQ A;  2KOD A;  4WYM A;  2JYG A;  2BUO A;  5I4T G;  1VQM P;  3I56 P;  1VQ7 P;  1BAJ A;  2OAR A;  2PY8 A;  5DCK A;  1KD1 Q;  3DPH A;  1D1D A;  1A8O A;  1EIA A;  3CCJ P;  1VQ5 P;  3DS1 A;  1IUQ A;  2XT1 A;  1A43 A;  3NTE A;  1VQO P;  2OTJ P;  3CCQ P;  3G21 A;  1K9M Q;  4XFY A;  3H0D A;  2Z44 A;  1ZMB A;  2EG5 A;  3DS4 A;  3G6E P;  1VQ8 P;  3DS2 A;  2M8L A;  1Q86 Q;  2PEM A;  3OW2 O;  4U0F A;  3H4E A;  2PEK A;  2QEX P;  3CCU P;  3HYB A;  3DS0 A;  3CMA P;  2EFJ A;  1Q7Y Q;  3CCE P;  2JO0 A;  2EIA A;  5BS2 A;  3P05 A;  3CCV P;  4COC A;  2OTL P;  2PEO A;  4XFZ A;  3VRL C;  3LRY A;  4GR2 A;  3MGE A;  1EOQ A;  1VQN P;  1NJI Q;  2M8P A;  1AUM A;  4U0E A;  2E1M A;  3DTJ A;  4XRO A;  3G1I A;  4XFX A;  1QVF O;  2BHV A;  1RO0 A;  2DGY A;  2M8N A;  3CME P;  2CWO A;  5F2O A;  4QNB A;  3CCS P;  3CC2 P;  2ONT A;  3H47 A;  4GR6 A;  1KQS O;  1YHQ P;  2QA4 P;  1YIJ P;  1VQP P;  3G1G A;  1M6N A;  1Q82 Q;  2Z46 A;  5BS1 A;  1VQK P;  4U0C A;  1S72 P;  1YJ9 P;  5JPA A;  1RNI A;  1M1K Q;  1N8R Q;  5HGO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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