3DTJA

Hiv-1 capsid c-terminal domain mutant (e187a)
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
73
structure length
73
Chain Sequence
SILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTATLLVQNANPDCKTILKALGPGATLEEMMTACQGV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords HIV-1 capsid protein
publication title Residues in the HIV-1 Capsid Assembly Inhibitor Binding Site Are Essential for Maintaining the Assembly-competent Quaternary Structure of the Capsid Protein.
pubmed doi rcsb
source organism Human immunodeficiency virus 1
total genus 27
structure length 73
sequence length 73
chains with identical sequence B, C, D
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2008-07-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3dtjA00
3MGEA 3G1IA 4U0AA 2EIAA 2XT1A 4XROA 3H47A 2M8PA 3G29A 4U0FA 5HGOA 3DS4A 4COPA 1EOQA 3DS0A 2LF4A 1AUMA 4XFZA 3DS2A 2JYGA 4M0IA 2XXMA 1A8OA 5DCKA 4XRQA 5HGLA 4U0BA 1BAJA 4COCA 1D1DA 3DS5A 2M8NA 3DTJA 3NTEA 1EIAA 2ONTA 4U0DA 4XFYA 1QRJA 1E6JP 3G26A 1A43A 3DS1A 3VRLC 3LRYA 3DS3A 4QNBA 4U0EA 2BUOA 2M8LA 3P05A 4WYMA 5HGNA 2JYLA 2JO0A 5I4TG 3DPHA 4PH1A 2L6EA 4U0CA 5HGMA 4PH0A 4XFXA 3G28A 5JPAA 2KODA 2XV6A 3G0VA 3G1GA 3G21A 4IPYA 3H4EA
chains in the Genus database with same CATH superfamily
4U0FA 1ACPA 2JYGA 1F80D 2KGDA 4GR6A 4BPFA 1YJ9P 3G4SP 2KOOA 1E6JP 3B4QA 3GJNA 2L6EA 3CMAP 5HGMA 2N98A 1IUQA 1GXHA 4DG9A 2LTEA 3CD6P 2FACA 5HGOA 3CCSP 1CEIA 2E1MA 2Z44A 1QVGO 2L9FA 3E2DA 2N6YA 2XXMA 3LMOA 3CCQP 1M6EX 3U43A 4BPHA 1AF8A 3NTEA 4R0MA 1VQLP 2FQ2A 2EFJA 2KOPA 2NO8A 2CNRA 2K94A 1GXGA 1Z6MA 2M8PA 2KOQA 1RO2A 3Q20A 5CZDB 2GDXA 4U0BA 2CWOA 1EMVA 2KGCA 1D1DA 2N6ZA 2PEOA 2M8NA 4H2WC 2ONTA 2VLOA 1QRJA 2MVUA 3G26A 3VRLC 4QNBA 1YIJP 2K93A 2PENA 4H2YC 3I55P 1KC8Q 5JPAA 3EJBA 1M90Q 3G0VA 2FVAA 2JQ4A 3G1GA 1YJWP 2K92A 2OTJP 5BS1A 1RNIA 4PXHB 2K0DX 2KORA 1OR5A 5DCKA 2GYKA 2KGEA 3DS5A 3OW2O 1X3OA 2FADA 1VQ4P 4U0DA 2ERHA 2VLQA 2ROQA 5HGNA 2JO0A 1BXIA 1K73Q 5EJDA 1NJIQ 2LOLA 3WBHA 2MY5A 2JB0A 4M0IA 1Q7YQ 1A8OA 2KG8A 2QEXP 3CCLP 3HYBA 1VQPP 2DNWA 1VQ9P 1KQSO 2N5HA 3H4EA 3G1IA 2MD9A 1VQ6P 2AVAA 1L0HA 5F2NA 3DS3A 5HVCA 3GZMA 2GDYA 1Q86Q 2FQ0A 2XZ1C 1UNKA 4IPYA 2X2BA 2PNGA 2XZ0D 2PEKA 1AUMA 2WPTA 5KP6B 1VHNA 1EIAA 1K30A 2GZFA 2AF8A 2LPKA 5I4TG 3DPHA 1VQ8P 2KG9A 2XV6A 1UJZA 3G21A 1L0IA 3MGEA 4U0AA 1QVFO 1Q82Q 1GPJA 3CCUP 2LF4A 3DS2A 7CEIA 4XRQA 3CC4P 4UHPB 4XFYA 2LKIA 2PEIA 4QKOA 2N5IA 1YJNP 5BS2A 2BHVA 3G6EP 1IMPA 3I56P 3EJDA 2GDWA 2LIUA 2L0QA 1K8AQ 2EIAA 4GR2A 1VQ7P 1ZMBA 4XFZA 2N50A 3CC2P 2CQ8A 2CGQA 5HV8A 2KR5A 2MF4A 1VQ5P 2K0YA 2M5RA 2JYLA 1MZ8A 4CA3A 4BPGA 1E0HA 4COPA 3DS0A 2VLPA 4HKGA 3CCJP 1IMQA 3EJEA 2LMLA 2VSQA 4COCA 2PEJA 2QNWA 3DTJA 1T8KA 1S72P 2KW2A 3B5IA 1VKUA 1VQKP 4XFXA 1YHQP 2KODA 1ZNVA 2EG5A 2MVVA 2GZEA 3G29A 2GZGA 2Z45A 2KOSA 3G71P 4IZ6A 3CCRP 4PWVB 1DV5A 3CCEP 2LL8A 5F2OA 2QA4P 1N8RQ 2KG6A 1KLPA 2KWLA 1Q81Q 2PY8A 2M8LA 3P05A 2FAEA 2FHSC 1VQMP 3GKLC 3HZQA 2L4BA 2K2QA 4F37A 4MRTC 2KGAA 1VQNP 2FVEA 1KD1Q 1NQ4A 2FVFA 1JJ2O 3CE7A 4WYMA 3RG6C 5F2KA 3G28A 2JBGA 2JU2A 3CPWO 2PEQA 1YITP 1AYIA 4XROA 2XT1A 2DGYA 3CC7P 3CMEP 3DS4A 2AFEA 1EOQA 2VLNA 2MR8A 3H0DA 2BUOA 1VQOP 1HQBA 2P9XA 2LIWA 5KP8B 3H47A 4H2XC 2K5XA 2JGPA 2FQ1A 2CG5B 2EHTA 3DS1A 3CXCO 3GZLA 4PH1A 4U0CA 2EHSA 3NY7B 2JU1A 2L22A 3CCVP 1YI2P 1DNYA 1W2BO 2K0XA 5HGLA 1M74A 3M1MA 2GZIA 1A43A 1K9MQ 1M6NA 3CCMP 4NEOA 2PEMA 2JAZA 1BAJA 5EW5E 2MR7A 5KP7B 1FR2A 1HY8A 3LRYA 4U0EA 4PH0A 3RG2A 1RO0A 2OTLP 2AFDA 2GZJA 2Z46A 2OARA 1M1KQ
chains in the Genus database with same CATH topology
1K8AQ 2EIAA 2XT1A 4GR2A 4XROA 2DGYA 4U0FA 3CC7P 3WBHA 3CMEP 3DS4A 1VQ7P 1EOQA 1ZMBA 4XFZA 3CC2P 2JYGA 4M0IA 1Q7YQ 1A8OA 4GR6A 1YJ9P 3G4SP 2QEXP 3CCLP 3HYBA 1VQPP 1E6JP 1VQ5P 3H0DA 2BUOA 2JYLA 2L6EA 3CMAP 5HGMA 1VQOP 1VQ9P 1KQSO 2P9XA 1IUQA 3H4EA 3G1IA 3CD6P 3H47A 5HGOA 4COPA 3CCSP 2E1MA 3DS0A 2Z44A 1QVGO 3E2DA 3CCJP 2XXMA 3CCQP 1VQ6P 4COCA 1M6EX 2PEJA 3DTJA 3NTEA 5F2NA 1VQLP 2EFJA 3DS1A 2PEQA 1S72P 3B5IA 3DS3A 1VQKP 3CXCO 4PH1A 4U0CA 4XFXA 1YHQP 2KODA 1Q86Q 4IPYA 3CCVP 2EG5A 1YI2P 2M8PA 3G29A 2Z45A 2PEKA 1RO2A 3G71P 3Q20A 1AUMA 1W2BO 3CCRP 5HGLA 4U0BA 3CCEP 1M74A 2CWOA 5F2OA 1D1DA 3M1MA 2PEOA 2M8NA 1EIAA 2ONTA 2QA4P 1K30A 1N8RQ 1QRJA 3G26A 1A43A 3VRLC 1Q81Q 2PY8A 4QNBA 2M8LA 5I4TG 1M6NA 3P05A 1YIJP 3CCMP 1K9MQ 3DPHA 2PENA 1VQ8P 3I55P 1KC8Q 5JPAA 2XV6A 1VQMP 3G0VA 3G1GA 3G21A 3HZQA 1M90Q 1YJWP 3MGEA 4U0AA 1QVFO 1Q82Q 2OTJP 5BS1A 2PEMA 3CCUP 1RNIA 2LF4A 3DS2A 5DCKA 4XRQA 3CC4P 1BAJA 1VQNP 3DS5A 1KD1Q 3OW2O 1VQ4P 4XFYA 4U0DA 2PEIA 1JJ2O 3LRYA 1YJNP 4U0EA 5HGNA 4WYMA 5BS2A 2BHVA 2JO0A 3RG6C 5F2KA 3G6EP 4PH0A 1K73Q 3G28A 1RO0A 2OTLP 3I56P 3CPWO 2Z46A 1YITP 2OARA 1M1KQ 1NJIQ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MGE A;  3G1I A;  4U0A A;  2EIA A;  2XT1 A;  4XRO A;  3H47 A;  2M8P A;  3G29 A;  4U0F A;  5HGO A;  3DS4 A;  4COP A;  1EOQ A;  3DS0 A;  2LF4 A;  1AUM A;  4XFZ A;  3DS2 A;  2JYG A;  4M0I A;  2XXM A;  1A8O A;  5DCK A;  4XRQ A;  5HGL A;  4U0B A;  1BAJ A;  4COC A;  1D1D A;  3DS5 A;  2M8N A;  3DTJ A;  3NTE A;  1EIA A;  2ONT A;  4U0D A;  4XFY A;  1QRJ A;  1E6J P;  3G26 A;  1A43 A;  3DS1 A;  3VRL C;  3LRY A;  3DS3 A;  4QNB A;  4U0E A;  2BUO A;  2M8L A;  3P05 A;  4WYM A;  5HGN A;  2JYL A;  2JO0 A;  5I4T G;  3DPH A;  4PH1 A;  2L6E A;  4U0C A;  5HGM A;  4PH0 A;  4XFX A;  3G28 A;  5JPA A;  2KOD A;  2XV6 A;  3G0V A;  3G1G A;  3G21 A;  4IPY A;  3H4E A; 
#chains in the Genus database with same CATH topology
 4U0F A;  1ACP A;  2JYG A;  1F80 D;  2KGD A;  4GR6 A;  4BPF A;  1YJ9 P;  3G4S P;  2KOO A;  1E6J P;  3B4Q A;  3GJN A;  2L6E A;  3CMA P;  5HGM A;  2N98 A;  1IUQ A;  1GXH A;  4DG9 A;  2LTE A;  3CD6 P;  2FAC A;  5HGO A;  3CCS P;  1CEI A;  2E1M A;  2Z44 A;  1QVG O;  2L9F A;  3E2D A;  2N6Y A;  2XXM A;  3LMO A;  3CCQ P;  1M6E X;  3U43 A;  4BPH A;  1AF8 A;  3NTE A;  4R0M A;  1VQL P;  2FQ2 A;  2EFJ A;  2KOP A;  2NO8 A;  2CNR A;  2K94 A;  1GXG A;  1Z6M A;  2M8P A;  2KOQ A;  1RO2 A;  3Q20 A;  5CZD B;  2GDX A;  4U0B A;  2CWO A;  1EMV A;  2KGC A;  1D1D A;  2N6Z A;  2PEO A;  2M8N A;  4H2W C;  2ONT A;  2VLO A;  1QRJ A;  2MVU A;  3G26 A;  3VRL C;  4QNB A;  1YIJ P;  2K93 A;  2PEN A;  4H2Y C;  3I55 P;  1KC8 Q;  5JPA A;  3EJB A;  1M90 Q;  3G0V A;  2FVA A;  2JQ4 A;  3G1G A;  1YJW P;  2K92 A;  2OTJ P;  5BS1 A;  1RNI A;  4PXH B;  2K0D X;  2KOR A;  1OR5 A;  5DCK A;  2GYK A;  2KGE A;  3DS5 A;  3OW2 O;  1X3O A;  2FAD A;  1VQ4 P;  4U0D A;  2ERH A;  2VLQ A;  2ROQ A;  5HGN A;  2JO0 A;  1BXI A;  1K73 Q;  5EJD A;  1NJI Q;  2LOL A;  3WBH A;  2MY5 A;  2JB0 A;  4M0I A;  1Q7Y Q;  1A8O A;  2KG8 A;  2QEX P;  3CCL P;  3HYB A;  1VQP P;  2DNW A;  1VQ9 P;  1KQS O;  2N5H A;  3H4E A;  3G1I A;  2MD9 A;  1VQ6 P;  2AVA A;  1L0H A;  5F2N A;  3DS3 A;  5HVC A;  3GZM A;  2GDY A;  1Q86 Q;  2FQ0 A;  2XZ1 C;  1UNK A;  4IPY A;  2X2B A;  2PNG A;  2XZ0 D;  2PEK A;  1AUM A;  2WPT A;  5KP6 B;  1VHN A;  1EIA A;  1K30 A;  2GZF A;  2AF8 A;  2LPK A;  5I4T G;  3DPH A;  1VQ8 P;  2KG9 A;  2XV6 A;  1UJZ A;  3G21 A;  1L0I A;  3MGE A;  4U0A A;  1QVF O;  1Q82 Q;  1GPJ A;  3CCU P;  2LF4 A;  3DS2 A;  7CEI A;  4XRQ A;  3CC4 P;  4UHP B;  4XFY A;  2LKI A;  2PEI A;  4QKO A;  2N5I A;  1YJN P;  5BS2 A;  2BHV A;  3G6E P;  1IMP A;  3I56 P;  3EJD A;  2GDW A;  2LIU A;  2L0Q A;  1K8A Q;  2EIA A;  4GR2 A;  1VQ7 P;  1ZMB A;  4XFZ A;  2N50 A;  3CC2 P;  2CQ8 A;  2CGQ A;  5HV8 A;  2KR5 A;  2MF4 A;  1VQ5 P;  2K0Y A;  2M5R A;  2JYL A;  1MZ8 A;  4CA3 A;  4BPG A;  1E0H A;  4COP A;  3DS0 A;  2VLP A;  4HKG A;  3CCJ P;  1IMQ A;  3EJE A;  2LML A;  2VSQ A;  4COC A;  2PEJ A;  2QNW A;  3DTJ A;  1T8K A;  1S72 P;  2KW2 A;  3B5I A;  1VKU A;  1VQK P;  4XFX A;  1YHQ P;  2KOD A;  1ZNV A;  2EG5 A;  2MVV A;  2GZE A;  3G29 A;  2GZG A;  2Z45 A;  2KOS A;  3G71 P;  4IZ6 A;  3CCR P;  4PWV B;  1DV5 A;  3CCE P;  2LL8 A;  5F2O A;  2QA4 P;  1N8R Q;  2KG6 A;  1KLP A;  2KWL A;  1Q81 Q;  2PY8 A;  2M8L A;  3P05 A;  2FAE A;  2FHS C;  1VQM P;  3GKL C;  3HZQ A;  2L4B A;  2K2Q A;  4F37 A;  4MRT C;  2KGA A;  1VQN P;  2FVE A;  1KD1 Q;  1NQ4 A;  2FVF A;  1JJ2 O;  3CE7 A;  4WYM A;  3RG6 C;  5F2K A;  3G28 A;  2JBG A;  2JU2 A;  3CPW O;  2PEQ A;  1YIT P;  1AYI A;  4XRO A;  2XT1 A;  2DGY A;  3CC7 P;  3CME P;  3DS4 A;  2AFE A;  1EOQ A;  2VLN A;  2MR8 A;  3H0D A;  2BUO A;  1VQO P;  1HQB A;  2P9X A;  2LIW A;  5KP8 B;  3H47 A;  4H2X C;  2K5X A;  2JGP A;  2FQ1 A;  2CG5 B;  2EHT A;  3DS1 A;  3CXC O;  3GZL A;  4PH1 A;  4U0C A;  2EHS A;  3NY7 B;  2JU1 A;  2L22 A;  3CCV P;  1YI2 P;  1DNY A;  1W2B O;  2K0X A;  5HGL A;  1M74 A;  3M1M A;  2GZI A;  1A43 A;  1K9M Q;  1M6N A;  3CCM P;  4NEO A;  2PEM A;  2JAZ A;  1BAJ A;  5EW5 E;  2MR7 A;  5KP7 B;  1FR2 A;  1HY8 A;  3LRY A;  4U0E A;  4PH0 A;  3RG2 A;  1RO0 A;  2OTL P;  2AFD A;  2GZJ A;  2Z46 A;  2OAR A;  1M1K Q; 
#chains in the Genus database with same CATH homology
 1K8A Q;  2EIA A;  2XT1 A;  4GR2 A;  4XRO A;  2DGY A;  4U0F A;  3CC7 P;  3WBH A;  3CME P;  3DS4 A;  1VQ7 P;  1EOQ A;  1ZMB A;  4XFZ A;  3CC2 P;  2JYG A;  4M0I A;  1Q7Y Q;  1A8O A;  4GR6 A;  1YJ9 P;  3G4S P;  2QEX P;  3CCL P;  3HYB A;  1VQP P;  1E6J P;  1VQ5 P;  3H0D A;  2BUO A;  2JYL A;  2L6E A;  3CMA P;  5HGM A;  1VQO P;  1VQ9 P;  1KQS O;  2P9X A;  1IUQ A;  3H4E A;  3G1I A;  3CD6 P;  3H47 A;  5HGO A;  4COP A;  3CCS P;  2E1M A;  3DS0 A;  2Z44 A;  1QVG O;  3E2D A;  3CCJ P;  2XXM A;  3CCQ P;  1VQ6 P;  4COC A;  1M6E X;  2PEJ A;  3DTJ A;  3NTE A;  5F2N A;  1VQL P;  2EFJ A;  3DS1 A;  2PEQ A;  1S72 P;  3B5I A;  3DS3 A;  1VQK P;  3CXC O;  4PH1 A;  4U0C A;  4XFX A;  1YHQ P;  2KOD A;  1Q86 Q;  4IPY A;  3CCV P;  2EG5 A;  1YI2 P;  2M8P A;  3G29 A;  2Z45 A;  2PEK A;  1RO2 A;  3G71 P;  3Q20 A;  1AUM A;  1W2B O;  3CCR P;  5HGL A;  4U0B A;  3CCE P;  1M74 A;  2CWO A;  5F2O A;  1D1D A;  3M1M A;  2PEO A;  2M8N A;  1EIA A;  2ONT A;  2QA4 P;  1K30 A;  1N8R Q;  1QRJ A;  3G26 A;  1A43 A;  3VRL C;  1Q81 Q;  2PY8 A;  4QNB A;  2M8L A;  5I4T G;  1M6N A;  3P05 A;  1YIJ P;  3CCM P;  1K9M Q;  3DPH A;  2PEN A;  1VQ8 P;  3I55 P;  1KC8 Q;  5JPA A;  2XV6 A;  1VQM P;  3G0V A;  3G1G A;  3G21 A;  3HZQ A;  1M90 Q;  1YJW P;  3MGE A;  4U0A A;  1QVF O;  1Q82 Q;  2OTJ P;  5BS1 A;  2PEM A;  3CCU P;  1RNI A;  2LF4 A;  3DS2 A;  5DCK A;  4XRQ A;  3CC4 P;  1BAJ A;  1VQN P;  3DS5 A;  1KD1 Q;  3OW2 O;  1VQ4 P;  4XFY A;  4U0D A;  2PEI A;  1JJ2 O;  3LRY A;  1YJN P;  4U0E A;  5HGN A;  4WYM A;  5BS2 A;  2BHV A;  2JO0 A;  3RG6 C;  5F2K A;  3G6E P;  4PH0 A;  1K73 Q;  3G28 A;  1RO0 A;  2OTL P;  3I56 P;  3CPW O;  2Z46 A;  1YIT P;  2OAR A;  1M1K Q;  1NJI Q; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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