4IPYA

Hiv capsid c-terminal domain
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
85
structure length
85
Chain Sequence
PTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords Capsid protein p24
publication title A triclinic crystal structure of the carboxy-terminal domain of HIV-1 capsid protein with four molecules in the asymmetric unit reveals a novel packing interface.
pubmed doi rcsb
source organism Human immunodeficiency virus type 1
total genus 28
structure length 85
sequence length 85
chains with identical sequence B, C, D
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2013-01-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 4ipyA00
3G28A 4WYMA 5DCKA 3G1IA 5HGOA 3DS0A 3G21A 3LRYA 5I4TG 4XFXA 4PH0A 5HGNA 1D1DA 3DS1A 1EOQA 2XV6A 1EIAA 2BUOA 2ONTA 4XROA 3DTJA 4M0IA 1BAJA 3G1GA 2M8NA 3VRLC 4U0DA 2XT1A 3DS2A 1A43A 3DPHA 2JYGA 2JO0A 3H47A 4IPYA 2L6EA 1E6JP 1QRJA 2XXMA 3DS5A 3G29A 3G26A 4COCA 3P05A 4U0FA 4COPA 2EIAA 2LF4A 3G0VA 4U0CA 2M8PA 4U0AA 4PH1A 4XFZA 4XRQA 2JYLA 1A8OA 2KODA 5HGMA 4U0EA 3DS3A 4QNBA 3H4EA 5JPAA 3DS4A 3MGEA 1AUMA 4U0BA 5HGLA 4XFYA 3NTEA 2M8LA
chains in the Genus database with same CATH superfamily
2AFEA 3CCVP 5HGOA 3E2DA 2VLPA 2KG9A 3HYBA 1VQOP 1K9MQ 1VQ4P 2AVAA 2QEXP 1BAJA 2PEKA 1BXIA 2GZEA 3CC4P 2MVVA 2XXMA 1YIJP 2VSQA 4DG9A 2JAZA 4IZ6A 1E0HA 4MRTC 3MGEA 1S72P 3CD6P 2CNRA 2AFDA 4H2YC 3H0DA 2MR8A 2JU2A 2KW2A 3CCQP 1VKUA 2K0DX 2GDYA 3LMOA 2VLNA 2JB0A 5HVCA 2OTJP 3CCUP 4PH1A 2EHSA 2PEOA 2LIWA 2X2BA 2FQ1A 3GKLC 3DS1A 1ZMBA 1KD1Q 1VQ6P 3RG6C 2CG5B 2Z44A 2DGYA 2M8NA 2VLOA 2DNWA 3CCEP 1FR2A 2E1MA 2JYLA 3DS4A 3CCLP 2KWLA 2FADA 2N98A 3G28A 2XZ0D 5I4TG 5HV8A 3EJEA 2KGEA 4U0DA 1IUQA 2GDXA 3CE7A 2CQ8A 1VQ7P 4U0AA 4H2WC 3H4EA 1M74A 3WBHA 2N6YA 2PEQA 3NY7B 2FVFA 1IMQA 1EIAA 3DTJA 1UJZA 2L0QA 2XT1A 1A43A 1K8AQ 2PENA 3G29A 2EIAA 1T8KA 2L4BA 2MF4A 2KORA 1YHQP 2GZJA 1AF8A 3G6EP 3GZMA 2LTEA 2PEJA 2VLQA 2FVEA 2JU1A 2ONTA 2FAEA 3G4SP 2WPTA 1NJIQ 4CA3A 2JO0A 1E6JP 2K0YA 2LF4A 3U43A 4XRQA 4QNBA 4U0BA 2L22A 3CC7P 1HY8A 3M1MA 3CXCO 2QA4P 1ACPA 1HQBA 2KOSA 3LRYA 2FACA 1JJ2O 5HGNA 1Q82Q 1VQ9P 2OARA 5F2KA 3CCRP 1N8RQ 2ROQA 2JGPA 2LKIA 1QRJA 2KG6A 3G0VA 4UHPB 1GPJA 4BPGA 4U0EA 3CMAP 2JBGA 1OR5A 1VQ8P 2XZ1C 2KGAA 2KOPA 3EJDA 1RNIA 3B4QA 3HZQA 2PNGA 2JYGA 1GXGA 4IPYA 2L6EA 3CPWO 4NEOA 1DV5A 2GZIA 4QKOA 4BPFA 1W2BO 1YJNP 3NTEA 4F37A 1Z6MA 1D1DA 2NO8A 2JQ4A 2EFJA 1KQSO 1YJ9P 1UNKA 1K73Q 1NQ4A 2Z45A 2LMLA 5F2NA 4COCA 3P05A 7CEIA 5HGMA 2KG8A 2GDWA 2LIUA 2LOLA 2MY5A 2M5RA 2PEIA 2QNWA 3Q20A 4XFXA 1MZ8A 4M0IA 5KP6B 1VQLP 4COPA 4U0FA 2N5HA 4HKGA 1A8OA 5BS2A 2CWOA 1VQ5P 2EHTA 4GR6A 1X3OA 4H2XC 5CZDB 2EG5A 1CEIA 1L0IA 3VRLC 1DNYA 1M6EX 1YITP 2KR5A 2KGDA 1YI2P 2N5IA 1KLPA 2N6ZA 2KODA 2GYKA 2LPKA 5HGLA 1M6NA 2FQ0A 2KGCA 3DS0A 5BS1A 2FQ2A 3CCJP 1F80D 2PY8A 2GZFA 3G26A 2LL8A 1L0HA 1ZNVA 2K94A 2K5XA 2K2QA 2CGQA 2ERHA 1K30A 4R0MA 2K93A 3GJNA 3G1GA 4PXHB 3I55P 1VQMP 5F2OA 3H47A 2L9FA 3CCMP 3GZLA 1AYIA 3G71P 5KP7B 1VQPP 4BPHA 3EJBA 5DCKA 3G1IA 2N50A 1EOQA 4XROA 2KOQA 4GR2A 1KC8Q 1Q81Q 2FHSC 1EMVA 4U0CA 1YJWP 1QVFO 2MVUA 1M90Q 1VQKP 2BHVA 4PWVB 2P9XA 1QVGO 5KP8B 2MD9A 3G21A 3CCSP 1Q86Q 3I56P 1GXHA 2PEMA 3DS2A 5EJDA 2Z46A 3DS5A 1IMPA 2M8PA 5EW5E 2MR7A 1VHNA 5JPAA 4XFYA 1RO0A 2AF8A 4WYMA 4PH0A 2K0XA 2XV6A 2BUOA 3CC2P 1M1KQ 1Q7YQ 1VQNP 3OW2O 3B5IA 3DPHA 2K92A 2KOOA 2FVAA 4XFZA 1RO2A 3DS3A 1AUMA 3RG2A 3CMEP 2GZGA 2M8LA 2OTLP
chains in the Genus database with same CATH topology
3CCVP 1K30A 2PEQA 5HGOA 3E2DA 1D1DA 1EIAA 3HYBA 1VQOP 1K9MQ 2EFJA 3DTJA 2QEXP 1VQ4P 1BAJA 2PEKA 3G1GA 1KQSO 2XT1A 3I55P 1YJ9P 1A43A 1VQMP 1K73Q 2Z45A 3CC4P 5F2OA 3H47A 1K8AQ 2PENA 3G29A 2XXMA 5F2NA 1YIJP 4COCA 3P05A 2EIAA 5HGMA 3CCMP 3G71P 3MGEA 1VQPP 1YHQP 1S72P 3G6EP 3CD6P 2PEIA 5DCKA 3Q20A 3G1IA 4XFXA 2PEJA 1EOQA 2ONTA 4XROA 3H0DA 3G4SP 3CCQP 1NJIQ 4M0IA 4GR2A 1KC8Q 2JO0A 1Q81Q 1E6JP 1VQLP 2OTJP 4COPA 4U0FA 3CCUP 2LF4A 4U0CA 4XRQA 1YJWP 4PH1A 1A8OA 2PEOA 1QVFO 5BS2A 1M90Q 4QNBA 2CWOA 1VQ5P 4U0BA 3CC7P 1VQKP 2BHVA 3M1MA 2P9XA 4GR6A 3CXCO 2QA4P 1QVGO 3G21A 3LRYA 1JJ2O 5HGNA 3DS1A 3CCSP 2EG5A 1Q82Q 1VQ9P 1Q86Q 2OARA 3I56P 1ZMBA 1KD1Q 5F2KA 3CCRP 1N8RQ 1VQ6P 3RG6C 2Z44A 2DGYA 2M8NA 3VRLC 2PEMA 3DS2A 3CCEP 1M6EX 1YITP 1QRJA 2Z46A 3DS5A 1YI2P 3G0VA 2E1MA 2M8PA 2JYLA 2KODA 4U0EA 3CMAP 5JPAA 3DS4A 3CCLP 5HGLA 1M6NA 4XFYA 1RO0A 3G28A 4WYMA 1VQ8P 3DS0A 5I4TG 5BS1A 4PH0A 3CCJP 2XV6A 2BUOA 3CC2P 2PY8A 1M1KQ 1Q7YQ 1RNIA 1VQNP 3HZQA 4U0DA 3OW2O 1IUQA 3B5IA 3DPHA 2JYGA 4IPYA 2L6EA 3CPWO 3G26A 1VQ7P 4U0AA 4XFZA 1RO2A 3DS3A 1W2BO 3H4EA 1AUMA 3CMEP 1M74A 1YJNP 3NTEA 3WBHA 2M8LA 2OTLP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G28 A;  4WYM A;  5DCK A;  3G1I A;  5HGO A;  3DS0 A;  3G21 A;  3LRY A;  5I4T G;  4XFX A;  4PH0 A;  5HGN A;  1D1D A;  3DS1 A;  1EOQ A;  2XV6 A;  1EIA A;  2BUO A;  2ONT A;  4XRO A;  3DTJ A;  4M0I A;  1BAJ A;  3G1G A;  2M8N A;  3VRL C;  4U0D A;  2XT1 A;  3DS2 A;  1A43 A;  3DPH A;  2JYG A;  2JO0 A;  3H47 A;  4IPY A;  2L6E A;  1E6J P;  1QRJ A;  2XXM A;  3DS5 A;  3G29 A;  3G26 A;  4COC A;  3P05 A;  4U0F A;  4COP A;  2EIA A;  2LF4 A;  3G0V A;  4U0C A;  2M8P A;  4U0A A;  4PH1 A;  4XFZ A;  4XRQ A;  2JYL A;  1A8O A;  2KOD A;  5HGM A;  4U0E A;  3DS3 A;  4QNB A;  3H4E A;  5JPA A;  3DS4 A;  3MGE A;  1AUM A;  4U0B A;  5HGL A;  4XFY A;  3NTE A;  2M8L A; 
#chains in the Genus database with same CATH topology
 2AFE A;  3CCV P;  5HGO A;  3E2D A;  2VLP A;  2KG9 A;  3HYB A;  1VQO P;  1K9M Q;  1VQ4 P;  2AVA A;  2QEX P;  1BAJ A;  2PEK A;  1BXI A;  2GZE A;  3CC4 P;  2MVV A;  2XXM A;  1YIJ P;  2VSQ A;  4DG9 A;  2JAZ A;  4IZ6 A;  1E0H A;  4MRT C;  3MGE A;  1S72 P;  3CD6 P;  2CNR A;  2AFD A;  4H2Y C;  3H0D A;  2MR8 A;  2JU2 A;  2KW2 A;  3CCQ P;  1VKU A;  2K0D X;  2GDY A;  3LMO A;  2VLN A;  2JB0 A;  5HVC A;  2OTJ P;  3CCU P;  4PH1 A;  2EHS A;  2PEO A;  2LIW A;  2X2B A;  2FQ1 A;  3GKL C;  3DS1 A;  1ZMB A;  1KD1 Q;  1VQ6 P;  3RG6 C;  2CG5 B;  2Z44 A;  2DGY A;  2M8N A;  2VLO A;  2DNW A;  3CCE P;  1FR2 A;  2E1M A;  2JYL A;  3DS4 A;  3CCL P;  2KWL A;  2FAD A;  2N98 A;  3G28 A;  2XZ0 D;  5I4T G;  5HV8 A;  3EJE A;  2KGE A;  4U0D A;  1IUQ A;  2GDX A;  3CE7 A;  2CQ8 A;  1VQ7 P;  4U0A A;  4H2W C;  3H4E A;  1M74 A;  3WBH A;  2N6Y A;  2PEQ A;  3NY7 B;  2FVF A;  1IMQ A;  1EIA A;  3DTJ A;  1UJZ A;  2L0Q A;  2XT1 A;  1A43 A;  1K8A Q;  2PEN A;  3G29 A;  2EIA A;  1T8K A;  2L4B A;  2MF4 A;  2KOR A;  1YHQ P;  2GZJ A;  1AF8 A;  3G6E P;  3GZM A;  2LTE A;  2PEJ A;  2VLQ A;  2FVE A;  2JU1 A;  2ONT A;  2FAE A;  3G4S P;  2WPT A;  1NJI Q;  4CA3 A;  2JO0 A;  1E6J P;  2K0Y A;  2LF4 A;  3U43 A;  4XRQ A;  4QNB A;  4U0B A;  2L22 A;  3CC7 P;  1HY8 A;  3M1M A;  3CXC O;  2QA4 P;  1ACP A;  1HQB A;  2KOS A;  3LRY A;  2FAC A;  1JJ2 O;  5HGN A;  1Q82 Q;  1VQ9 P;  2OAR A;  5F2K A;  3CCR P;  1N8R Q;  2ROQ A;  2JGP A;  2LKI A;  1QRJ A;  2KG6 A;  3G0V A;  4UHP B;  1GPJ A;  4BPG A;  4U0E A;  3CMA P;  2JBG A;  1OR5 A;  1VQ8 P;  2XZ1 C;  2KGA A;  2KOP A;  3EJD A;  1RNI A;  3B4Q A;  3HZQ A;  2PNG A;  2JYG A;  1GXG A;  4IPY A;  2L6E A;  3CPW O;  4NEO A;  1DV5 A;  2GZI A;  4QKO A;  4BPF A;  1W2B O;  1YJN P;  3NTE A;  4F37 A;  1Z6M A;  1D1D A;  2NO8 A;  2JQ4 A;  2EFJ A;  1KQS O;  1YJ9 P;  1UNK A;  1K73 Q;  1NQ4 A;  2Z45 A;  2LML A;  5F2N A;  4COC A;  3P05 A;  7CEI A;  5HGM A;  2KG8 A;  2GDW A;  2LIU A;  2LOL A;  2MY5 A;  2M5R A;  2PEI A;  2QNW A;  3Q20 A;  4XFX A;  1MZ8 A;  4M0I A;  5KP6 B;  1VQL P;  4COP A;  4U0F A;  2N5H A;  4HKG A;  1A8O A;  5BS2 A;  2CWO A;  1VQ5 P;  2EHT A;  4GR6 A;  1X3O A;  4H2X C;  5CZD B;  2EG5 A;  1CEI A;  1L0I A;  3VRL C;  1DNY A;  1M6E X;  1YIT P;  2KR5 A;  2KGD A;  1YI2 P;  2N5I A;  1KLP A;  2N6Z A;  2KOD A;  2GYK A;  2LPK A;  5HGL A;  1M6N A;  2FQ0 A;  2KGC A;  3DS0 A;  5BS1 A;  2FQ2 A;  3CCJ P;  1F80 D;  2PY8 A;  2GZF A;  3G26 A;  2LL8 A;  1L0H A;  1ZNV A;  2K94 A;  2K5X A;  2K2Q A;  2CGQ A;  2ERH A;  1K30 A;  4R0M A;  2K93 A;  3GJN A;  3G1G A;  4PXH B;  3I55 P;  1VQM P;  5F2O A;  3H47 A;  2L9F A;  3CCM P;  3GZL A;  1AYI A;  3G71 P;  5KP7 B;  1VQP P;  4BPH A;  3EJB A;  5DCK A;  3G1I A;  2N50 A;  1EOQ A;  4XRO A;  2KOQ A;  4GR2 A;  1KC8 Q;  1Q81 Q;  2FHS C;  1EMV A;  4U0C A;  1YJW P;  1QVF O;  2MVU A;  1M90 Q;  1VQK P;  2BHV A;  4PWV B;  2P9X A;  1QVG O;  5KP8 B;  2MD9 A;  3G21 A;  3CCS P;  1Q86 Q;  3I56 P;  1GXH A;  2PEM A;  3DS2 A;  5EJD A;  2Z46 A;  3DS5 A;  1IMP A;  2M8P A;  5EW5 E;  2MR7 A;  1VHN A;  5JPA A;  4XFY A;  1RO0 A;  2AF8 A;  4WYM A;  4PH0 A;  2K0X A;  2XV6 A;  2BUO A;  3CC2 P;  1M1K Q;  1Q7Y Q;  1VQN P;  3OW2 O;  3B5I A;  3DPH A;  2K92 A;  2KOO A;  2FVA A;  4XFZ A;  1RO2 A;  3DS3 A;  1AUM A;  3RG2 A;  3CME P;  2GZG A;  2M8L A;  2OTL P; 
#chains in the Genus database with same CATH homology
 3CCV P;  1K30 A;  2PEQ A;  5HGO A;  3E2D A;  1D1D A;  1EIA A;  3HYB A;  1VQO P;  1K9M Q;  2EFJ A;  3DTJ A;  2QEX P;  1VQ4 P;  1BAJ A;  2PEK A;  3G1G A;  1KQS O;  2XT1 A;  3I55 P;  1YJ9 P;  1A43 A;  1VQM P;  1K73 Q;  2Z45 A;  3CC4 P;  5F2O A;  3H47 A;  1K8A Q;  2PEN A;  3G29 A;  2XXM A;  5F2N A;  1YIJ P;  4COC A;  3P05 A;  2EIA A;  5HGM A;  3CCM P;  3G71 P;  3MGE A;  1VQP P;  1YHQ P;  1S72 P;  3G6E P;  3CD6 P;  2PEI A;  5DCK A;  3Q20 A;  3G1I A;  4XFX A;  2PEJ A;  1EOQ A;  2ONT A;  4XRO A;  3H0D A;  3G4S P;  3CCQ P;  1NJI Q;  4M0I A;  4GR2 A;  1KC8 Q;  2JO0 A;  1Q81 Q;  1E6J P;  1VQL P;  2OTJ P;  4COP A;  4U0F A;  3CCU P;  2LF4 A;  4U0C A;  4XRQ A;  1YJW P;  4PH1 A;  1A8O A;  2PEO A;  1QVF O;  5BS2 A;  1M90 Q;  4QNB A;  2CWO A;  1VQ5 P;  4U0B A;  3CC7 P;  1VQK P;  2BHV A;  3M1M A;  2P9X A;  4GR6 A;  3CXC O;  2QA4 P;  1QVG O;  3G21 A;  3LRY A;  1JJ2 O;  5HGN A;  3DS1 A;  3CCS P;  2EG5 A;  1Q82 Q;  1VQ9 P;  1Q86 Q;  2OAR A;  3I56 P;  1ZMB A;  1KD1 Q;  5F2K A;  3CCR P;  1N8R Q;  1VQ6 P;  3RG6 C;  2Z44 A;  2DGY A;  2M8N A;  3VRL C;  2PEM A;  3DS2 A;  3CCE P;  1M6E X;  1YIT P;  1QRJ A;  2Z46 A;  3DS5 A;  1YI2 P;  3G0V A;  2E1M A;  2M8P A;  2JYL A;  2KOD A;  4U0E A;  3CMA P;  5JPA A;  3DS4 A;  3CCL P;  5HGL A;  1M6N A;  4XFY A;  1RO0 A;  3G28 A;  4WYM A;  1VQ8 P;  3DS0 A;  5I4T G;  5BS1 A;  4PH0 A;  3CCJ P;  2XV6 A;  2BUO A;  3CC2 P;  2PY8 A;  1M1K Q;  1Q7Y Q;  1RNI A;  1VQN P;  3HZQ A;  4U0D A;  3OW2 O;  1IUQ A;  3B5I A;  3DPH A;  2JYG A;  4IPY A;  2L6E A;  3CPW O;  3G26 A;  1VQ7 P;  4U0A A;  4XFZ A;  1RO2 A;  3DS3 A;  1W2B O;  3H4E A;  1AUM A;  3CME P;  1M74 A;  1YJN P;  3NTE A;  3WBH A;  2M8L A;  2OTL P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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