4H2XC

Crystal structure of engineered bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with carrier protein from agrobacterium tumefaciens and an analogue of glycyl adenylate
Total Genus 23
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
77
structure length
77
Chain Sequence
HMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVKLI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Adaptation of aminoacyl-tRNA synthetase catalytic core to carrier protein aminoacylation.
pubmed doi rcsb
molecule tags Ligase
source organism Bradyrhizobium japonicum
molecule keywords Amino acid--[acyl-carrier-protein] ligase 1
total genus 23
structure length 77
sequence length 77
chains with identical sequence D
ec nomenclature
pdb deposition date 2012-09-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 4h2xC00
2JU2A 2FQ0A 4DG9A 5CZDB 4CA3A 2KGEA 4IZ6A 2N6ZA 2EHSA 2KOOA 2MVUA 4H2WC 2MR8A 2X2BA 2PNGA 2MY5A 2LIWA 1DNYA 2KGDA 2MD9A 1NQ4A 2FACA 2KR5A 1VKUA 4NEOA 3GZMA 2N50A 2L0QA 3EJBA 2FQ2A 2FQ1A 3CE7A 2L9FA 2KW2A 2FADA 2K93A 3GZLA 2CG5B 2XZ0D 2ROQA 2DNWA 2K0XA 1DV5A 2EHTA 2CQ8A 4R0MA 1T8KA 2JQ4A 2MVVA 2LMLA 2VSQA 1ACPA 2AVAA 2LIUA 2GDWA 1KLPA 1L0HA 1F80D 3EJEA 2L22A 2AF8A 2L4BA 2LTEA 2KG6A 4HKGA 2KG9A 4BPGA 2FVEA 1AF8A 5EJDA 2CGQA 4PWVB 2XZ1C 3LMOA 4BPHA 2FVFA 2K2QA 2KORA 3RG2A 2M5RA 2FAEA 2GDXA 4H2YC 2N98A 4BPFA 2K92A 1X3OA 5KP8B 2KGCA 1HQBA 2LKIA 1HY8A 2FVAA 2N6YA 5HV8A 2QNWA 2MR7A 2KOPA 2K94A 2LOLA 2FHSC 2N5HA 2JU1A 2KOQA 5KP7B 2KWLA 5KP6B 4H2XC 2AFDA 3EJDA 2GDYA 2LL8A 2KOSA 2CNRA 3NY7B 4MRTC 2MF4A 4PXHB 2N5IA 2K0YA 1L0IA 1OR5A 2KG8A 5HVCA 2LPKA 2JGPA 2KGAA 2AFEA
chains in the Genus database with same CATH superfamily
2FQ0A 1VQOP 3DS2A 2EHSA 2MVUA 4H2WC 3CD6P 1GPJA 3CPWO 1QVGO 2KGDA 2MD9A 1NQ4A 2FACA 3G28A 2BUOA 3CXCO 4XRQA 3EJBA 2FQ1A 1UJZA 1YIJP 1IMPA 4PH1A 3GZLA 1QRJA 1K73Q 4XFXA 2XV6A 1YHQP 1K8AQ 2CQ8A 1Q81Q 2LMLA 2AVAA 2JB0A 1KLPA 1Z6MA 1JJ2O 1IMQA 3B5IA 3GJNA 2AF8A 1KQSO 2LTEA 4QNBA 4BPGA 1K30A 1EOQA 2Z45A 1AF8A 2CGQA 2PEMA 2FVFA 2KORA 3RG2A 4H2YC 2N98A 1X3OA 1W2BO 4QKOA 2JAZA 2FVAA 2EG5A 1VHNA 2PEIA 3WBHA 3DTJA 2VLNA 2OTJP 4M0IA 2PEKA 2K5XA 2FHSC 3H47A 2KODA 1Q82Q 2CWOA 4GR6A 2LL8A 2PENA 3NY7B 1K9MQ 1BAJA 5F2NA 4PXHB 4U0AA 1IUQA 1VQMP 2LPKA 4DG9A 2M8LA 1GXGA 2MR8A 5I4TG 2EIAA 4PH0A 3G0VA 2KR5A 1VQKP 1VKUA 3CCUP 1RNIA 2BHVA 2FQ2A 3G1IA 2XT1A 3CE7A 2L9FA 2KW2A 4COCA 3CCSP 3NTEA 3G1GA 1ZNVA 2ROQA 1BXIA 2QEXP 1E6JP 3DS5A 1T8KA 1ACPA 1Q7YQ 2NO8A 2LIUA 5BS1A 1YJ9P 3MGEA 1L0HA 2L22A 5JPAA 4HKGA 1M74A 5DCKA 4XFYA 1NJIQ 3HZQA 3I56P 4PWVB 2M5RA 1YJNP 5F2KA 5KP8B 2LKIA 1YI2P 3DS3A 4XROA 2EFJA 2N6YA 5HV8A 2QNWA 2MR7A 2KOPA 2Z44A 5HGOA 2DGYA 2JYGA 1AYIA 3OW2O 3U43A 2JU1A 1VQ4P 1VQ5P 3DS1A 2CNRA 2Z46A 5EW5E 5HGNA 3E2DA 3HYBA 1QVFO 2OTLP 1Q86Q 4COPA 1L0IA 3P05A 2AFEA 2JU2A 5CZDB 2N6ZA 1YITP 1VQ8P 2QA4P 2GZIA 2JO0A 2P9XA 3Q20A 2PNGA 3CC2P 2LIWA 1DNYA 3DS0A 3M1MA 2N50A 2L0QA 3B4QA 4IPYA 1S72P 2FADA 1AUMA 3CMEP 2K93A 1YJWP 2CG5B 2GZFA 4WYMA 2JYLA 2WPTA 2JQ4A 4UHPB 2ONTA 3CCLP 1FR2A 2GDWA 3EJEA 2GZGA 1MZ8A 3DPHA 2KG9A 3VRLC 1EMVA 3CCQP 3CC4P 1VQ9P 2K2QA 2FAEA 2GDXA 1D1DA 2XXMA 3RG6C 2KGCA 1VQPP 2K0DX 1HY8A 2GZJA 2PEQA 4U0FA 1VQLP 5BS2A 1M90Q 3I55P 3H0DA 3G29A 2VLQA 2KWLA 5KP6B 3CMAP 3CCRP 4H2XC 3EJDA 2GDYA 2JBGA 4F37A 2KOSA 2PEJA 2N5IA 2K0YA 2KG8A 1OR5A 5HVCA 1VQNP 3CC7P 4CA3A 1UNKA 2KGEA 4IZ6A 2GYKA 2KOOA 3G6EP 2X2BA 2VLOA 4XFZA 2MY5A 4NEOA 3GZMA 1KC8Q 1RO0A 2GZEA 2ERHA 3H4EA 1VQ6P 3G4SP 2LF4A 3G21A 2PEOA 2M8PA 2XZ0D 2DNWA 2VLPA 1E0HA 2K0XA 2L6EA 1VQ7P 1DV5A 2EHTA 4R0MA 2E1MA 2MVVA 2VSQA 1F80D 5F2OA 1A43A 2L4BA 2KG6A 1M6EX 5HGMA 2FVEA 5EJDA 2PY8A 2M8NA 2XZ1C 3LMOA 4BPHA 1M1KQ 4U0BA 3LRYA 1EIAA 4BPFA 2K92A 1CEIA 1HQBA 3G71P 5HGLA 3DS4A 3CCJP 4U0EA 2K94A 1GXHA 2LOLA 2N5HA 1RO2A 3G26A 3GKLC 2KOQA 5KP7B 1KD1Q 2AFDA 7CEIA 4GR2A 3CCVP 4U0CA 1N8RQ 4U0DA 3CCMP 1ZMBA 4MRTC 2MF4A 1A8OA 3CCEP 1M6NA 2JGPA 2KGAA 2OARA
chains in the Genus database with same CATH topology
2JU2A 2FQ0A 4DG9A 5CZDB 4CA3A 2KGEA 4IZ6A 2N6ZA 2EHSA 2KOOA 2MVUA 4H2WC 2MR8A 2X2BA 2PNGA 2MY5A 2LIWA 1DNYA 2KGDA 2MD9A 1NQ4A 2FACA 2KR5A 1VKUA 4NEOA 3GZMA 2N50A 2L0QA 3EJBA 2FQ2A 2FQ1A 3CE7A 2L9FA 2KW2A 2FADA 2K93A 3GZLA 2CG5B 2XZ0D 2ROQA 2DNWA 2K0XA 1DV5A 2EHTA 2CQ8A 4R0MA 1T8KA 2JQ4A 2MVVA 2LMLA 2VSQA 1ACPA 2AVAA 2LIUA 2GDWA 1KLPA 1L0HA 1F80D 3EJEA 2L22A 2AF8A 2L4BA 2LTEA 2KG6A 4HKGA 2KG9A 4BPGA 2FVEA 1AF8A 5EJDA 2CGQA 4PWVB 2XZ1C 3LMOA 4BPHA 2FVFA 2K2QA 2KORA 3RG2A 2M5RA 2FAEA 2GDXA 4H2YC 2N98A 4BPFA 2K92A 1X3OA 5KP8B 2KGCA 1HQBA 2LKIA 1HY8A 2FVAA 2N6YA 5HV8A 2QNWA 2MR7A 2KOPA 2K94A 2LOLA 2FHSC 2N5HA 2JU1A 2KOQA 5KP7B 2KWLA 5KP6B 4H2XC 2AFDA 3EJDA 2GDYA 2LL8A 2KOSA 2CNRA 3NY7B 4MRTC 2MF4A 4PXHB 2N5IA 2K0YA 1L0IA 1OR5A 2KG8A 5HVCA 2LPKA 2JGPA 2KGAA 2AFEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JU2 A;  2FQ0 A;  4DG9 A;  5CZD B;  4CA3 A;  2KGE A;  4IZ6 A;  2N6Z A;  2EHS A;  2KOO A;  2MVU A;  4H2W C;  2MR8 A;  2X2B A;  2PNG A;  2MY5 A;  2LIW A;  1DNY A;  2KGD A;  2MD9 A;  1NQ4 A;  2FAC A;  2KR5 A;  1VKU A;  4NEO A;  3GZM A;  2N50 A;  2L0Q A;  3EJB A;  2FQ2 A;  2FQ1 A;  3CE7 A;  2L9F A;  2KW2 A;  2FAD A;  2K93 A;  3GZL A;  2CG5 B;  2XZ0 D;  2ROQ A;  2DNW A;  2K0X A;  1DV5 A;  2EHT A;  2CQ8 A;  4R0M A;  1T8K A;  2JQ4 A;  2MVV A;  2LML A;  2VSQ A;  1ACP A;  2AVA A;  2LIU A;  2GDW A;  1KLP A;  1L0H A;  1F80 D;  3EJE A;  2L22 A;  2AF8 A;  2L4B A;  2LTE A;  2KG6 A;  4HKG A;  2KG9 A;  4BPG A;  2FVE A;  1AF8 A;  5EJD A;  2CGQ A;  4PWV B;  2XZ1 C;  3LMO A;  4BPH A;  2FVF A;  2K2Q A;  2KOR A;  3RG2 A;  2M5R A;  2FAE A;  2GDX A;  4H2Y C;  2N98 A;  4BPF A;  2K92 A;  1X3O A;  5KP8 B;  2KGC A;  1HQB A;  2LKI A;  1HY8 A;  2FVA A;  2N6Y A;  5HV8 A;  2QNW A;  2MR7 A;  2KOP A;  2K94 A;  2LOL A;  2FHS C;  2N5H A;  2JU1 A;  2KOQ A;  5KP7 B;  2KWL A;  5KP6 B;  4H2X C;  2AFD A;  3EJD A;  2GDY A;  2LL8 A;  2KOS A;  2CNR A;  3NY7 B;  4MRT C;  2MF4 A;  4PXH B;  2N5I A;  2K0Y A;  1L0I A;  1OR5 A;  2KG8 A;  5HVC A;  2LPK A;  2JGP A;  2KGA A;  2AFE A; 
#chains in the Genus database with same CATH topology
 2FQ0 A;  1VQO P;  3DS2 A;  2EHS A;  2MVU A;  4H2W C;  3CD6 P;  1GPJ A;  3CPW O;  1QVG O;  2KGD A;  2MD9 A;  1NQ4 A;  2FAC A;  3G28 A;  2BUO A;  3CXC O;  4XRQ A;  3EJB A;  2FQ1 A;  1UJZ A;  1YIJ P;  1IMP A;  4PH1 A;  3GZL A;  1QRJ A;  1K73 Q;  4XFX A;  2XV6 A;  1YHQ P;  1K8A Q;  2CQ8 A;  1Q81 Q;  2LML A;  2AVA A;  2JB0 A;  1KLP A;  1Z6M A;  1JJ2 O;  1IMQ A;  3B5I A;  3GJN A;  2AF8 A;  1KQS O;  2LTE A;  4QNB A;  4BPG A;  1K30 A;  1EOQ A;  2Z45 A;  1AF8 A;  2CGQ A;  2PEM A;  2FVF A;  2KOR A;  3RG2 A;  4H2Y C;  2N98 A;  1X3O A;  1W2B O;  4QKO A;  2JAZ A;  2FVA A;  2EG5 A;  1VHN A;  2PEI A;  3WBH A;  3DTJ A;  2VLN A;  2OTJ P;  4M0I A;  2PEK A;  2K5X A;  2FHS C;  3H47 A;  2KOD A;  1Q82 Q;  2CWO A;  4GR6 A;  2LL8 A;  2PEN A;  3NY7 B;  1K9M Q;  1BAJ A;  5F2N A;  4PXH B;  4U0A A;  1IUQ A;  1VQM P;  2LPK A;  4DG9 A;  2M8L A;  1GXG A;  2MR8 A;  5I4T G;  2EIA A;  4PH0 A;  3G0V A;  2KR5 A;  1VQK P;  1VKU A;  3CCU P;  1RNI A;  2BHV A;  2FQ2 A;  3G1I A;  2XT1 A;  3CE7 A;  2L9F A;  2KW2 A;  4COC A;  3CCS P;  3NTE A;  3G1G A;  1ZNV A;  2ROQ A;  1BXI A;  2QEX P;  1E6J P;  3DS5 A;  1T8K A;  1ACP A;  1Q7Y Q;  2NO8 A;  2LIU A;  5BS1 A;  1YJ9 P;  3MGE A;  1L0H A;  2L22 A;  5JPA A;  4HKG A;  1M74 A;  5DCK A;  4XFY A;  1NJI Q;  3HZQ A;  3I56 P;  4PWV B;  2M5R A;  1YJN P;  5F2K A;  5KP8 B;  2LKI A;  1YI2 P;  3DS3 A;  4XRO A;  2EFJ A;  2N6Y A;  5HV8 A;  2QNW A;  2MR7 A;  2KOP A;  2Z44 A;  5HGO A;  2DGY A;  2JYG A;  1AYI A;  3OW2 O;  3U43 A;  2JU1 A;  1VQ4 P;  1VQ5 P;  3DS1 A;  2CNR A;  2Z46 A;  5EW5 E;  5HGN A;  3E2D A;  3HYB A;  1QVF O;  2OTL P;  1Q86 Q;  4COP A;  1L0I A;  3P05 A;  2AFE A;  2JU2 A;  5CZD B;  2N6Z A;  1YIT P;  1VQ8 P;  2QA4 P;  2GZI A;  2JO0 A;  2P9X A;  3Q20 A;  2PNG A;  3CC2 P;  2LIW A;  1DNY A;  3DS0 A;  3M1M A;  2N50 A;  2L0Q A;  3B4Q A;  4IPY A;  1S72 P;  2FAD A;  1AUM A;  3CME P;  2K93 A;  1YJW P;  2CG5 B;  2GZF A;  4WYM A;  2JYL A;  2WPT A;  2JQ4 A;  4UHP B;  2ONT A;  3CCL P;  1FR2 A;  2GDW A;  3EJE A;  2GZG A;  1MZ8 A;  3DPH A;  2KG9 A;  3VRL C;  1EMV A;  3CCQ P;  3CC4 P;  1VQ9 P;  2K2Q A;  2FAE A;  2GDX A;  1D1D A;  2XXM A;  3RG6 C;  2KGC A;  1VQP P;  2K0D X;  1HY8 A;  2GZJ A;  2PEQ A;  4U0F A;  1VQL P;  5BS2 A;  1M90 Q;  3I55 P;  3H0D A;  3G29 A;  2VLQ A;  2KWL A;  5KP6 B;  3CMA P;  3CCR P;  4H2X C;  3EJD A;  2GDY A;  2JBG A;  4F37 A;  2KOS A;  2PEJ A;  2N5I A;  2K0Y A;  2KG8 A;  1OR5 A;  5HVC A;  1VQN P;  3CC7 P;  4CA3 A;  1UNK A;  2KGE A;  4IZ6 A;  2GYK A;  2KOO A;  3G6E P;  2X2B A;  2VLO A;  4XFZ A;  2MY5 A;  4NEO A;  3GZM A;  1KC8 Q;  1RO0 A;  2GZE A;  2ERH A;  3H4E A;  1VQ6 P;  3G4S P;  2LF4 A;  3G21 A;  2PEO A;  2M8P A;  2XZ0 D;  2DNW A;  2VLP A;  1E0H A;  2K0X A;  2L6E A;  1VQ7 P;  1DV5 A;  2EHT A;  4R0M A;  2E1M A;  2MVV A;  2VSQ A;  1F80 D;  5F2O A;  1A43 A;  2L4B A;  2KG6 A;  1M6E X;  5HGM A;  2FVE A;  5EJD A;  2PY8 A;  2M8N A;  2XZ1 C;  3LMO A;  4BPH A;  1M1K Q;  4U0B A;  3LRY A;  1EIA A;  4BPF A;  2K92 A;  1CEI A;  1HQB A;  3G71 P;  5HGL A;  3DS4 A;  3CCJ P;  4U0E A;  2K94 A;  1GXH A;  2LOL A;  2N5H A;  1RO2 A;  3G26 A;  3GKL C;  2KOQ A;  5KP7 B;  1KD1 Q;  2AFD A;  7CEI A;  4GR2 A;  3CCV P;  4U0C A;  1N8R Q;  4U0D A;  3CCM P;  1ZMB A;  4MRT C;  2MF4 A;  1A8O A;  3CCE P;  1M6N A;  2JGP A;  2KGA A;  2OAR A; 
#chains in the Genus database with same CATH homology
 2JU2 A;  2FQ0 A;  4DG9 A;  5CZD B;  4CA3 A;  2KGE A;  4IZ6 A;  2N6Z A;  2EHS A;  2KOO A;  2MVU A;  4H2W C;  2MR8 A;  2X2B A;  2PNG A;  2MY5 A;  2LIW A;  1DNY A;  2KGD A;  2MD9 A;  1NQ4 A;  2FAC A;  2KR5 A;  1VKU A;  4NEO A;  3GZM A;  2N50 A;  2L0Q A;  3EJB A;  2FQ2 A;  2FQ1 A;  3CE7 A;  2L9F A;  2KW2 A;  2FAD A;  2K93 A;  3GZL A;  2CG5 B;  2XZ0 D;  2ROQ A;  2DNW A;  2K0X A;  1DV5 A;  2EHT A;  2CQ8 A;  4R0M A;  1T8K A;  2JQ4 A;  2MVV A;  2LML A;  2VSQ A;  1ACP A;  2AVA A;  2LIU A;  2GDW A;  1KLP A;  1L0H A;  1F80 D;  3EJE A;  2L22 A;  2AF8 A;  2L4B A;  2LTE A;  2KG6 A;  4HKG A;  2KG9 A;  4BPG A;  2FVE A;  1AF8 A;  5EJD A;  2CGQ A;  4PWV B;  2XZ1 C;  3LMO A;  4BPH A;  2FVF A;  2K2Q A;  2KOR A;  3RG2 A;  2M5R A;  2FAE A;  2GDX A;  4H2Y C;  2N98 A;  4BPF A;  2K92 A;  1X3O A;  5KP8 B;  2KGC A;  1HQB A;  2LKI A;  1HY8 A;  2FVA A;  2N6Y A;  5HV8 A;  2QNW A;  2MR7 A;  2KOP A;  2K94 A;  2LOL A;  2FHS C;  2N5H A;  2JU1 A;  2KOQ A;  5KP7 B;  2KWL A;  5KP6 B;  4H2X C;  2AFD A;  3EJD A;  2GDY A;  2LL8 A;  2KOS A;  2CNR A;  3NY7 B;  4MRT C;  2MF4 A;  4PXH B;  2N5I A;  2K0Y A;  1L0I A;  1OR5 A;  2KG8 A;  5HVC A;  2LPK A;  2JGP A;  2KGA A;  2AFE A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...