4F37A

Structure of the tethered n-terminus of alzheimer's disease a peptide
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
102
structure length
102
Chain Sequence
DAEFRHDSGYEVHHQKSELKNSISDYTEAEFVQLLKEIEKENVAATDDVLDVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKPGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Colicin-E7 immunity protein
publication title Structural studies of the tethered N-terminus of the Alzheimer's disease amyloid-beta peptide.
pubmed doi rcsb
source organism Mus musculus
molecule tags Immune system
total genus 11
structure length 102
sequence length 102
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 4f37A00
1E0HA 2K0DX 1BXIA 2VLOA 1MZ8A 1GXHA 2GZIA 2K5XA 7CEIA 2ERHA 1ZNVA 2VLQA 1GXGA 4F37A 2VLNA 1EMVA 1UNKA 2NO8A 3GKLC 2JAZA 2GYKA 1CEIA 2WPTA 2GZEA 3U43A 2JBGA 2VLPA 5EW5E 1IMQA 1IMPA 2JB0A 1AYIA 4UHPB 3GJNA 1FR2A 2GZFA 2GZJA 2GZGA 4QKOA 1UJZA
chains in the Genus database with same CATH superfamily
1NQ4A 2CNRA 3G71P 2MF4A 3CD6P 2L4BA 4U0AA 2OARA 2FQ2A 2KORA 2KGAA 1Q86Q 3GKLC 3G28A 1F80D 3CCEP 1Q82Q 2L22A 2QA4P 2M8LA 1YITP 3GZLA 1IMPA 2LF4A 3DS1A 2DNWA 2KOOA 3CCVP 1VQ7P 2FACA 2GZIA 4H2XC 7CEIA 1A43A 2AF8A 2KOPA 5HGNA 3B4QA 3VRLC 2XZ1C 1AF8A 2X2BA 3CCLP 2PEJA 3E2DA 2JB0A 4GR6A 1FR2A 4XRQA 5F2KA 2XV6A 1M6EX 4IZ6A 3P05A 2M8PA 2KG8A 2FADA 2WPTA 4XFZA 3B5IA 5HV8A 1YI2P 3CCMP 5KP7B 2K93A 1IMQA 3CC4P 1ACPA 1VQKP 2EFJA 2CQ8A 4BPGA 1VQ4P 2KWLA 2EIAA 4U0EA 1VHNA 1KC8Q 4GR2A 4PWVB 4MRTC 1YJWP 1N8RQ 5HVCA 1E6JP 1K30A 1VQ5P 5CZDB 3H47A 2PNGA 3G1IA 2K94A 2N5HA 1YJNP 2K92A 1E0HA 4M0IA 1K8AQ 2JGPA 3CC2P 1D1DA 2K0YA 2PEOA 1VQ6P 1YIJP 4DG9A 3I56P 1M74A 1CEIA 1YJ9P 4XFYA 3DS2A 1VQ8P 1VKUA 5KP8B 2N5IA 4H2YC 1AYIA 1L0IA 3OW2O 2CG5B 2AFEA 1Z6MA 1QVFO 2KGDA 3EJBA 1UNKA 1ZMBA 2K0XA 3M1MA 5EJDA 1M6NA 5BS1A 4CA3A 2VLPA 5DCKA 3DS3A 2MD9A 4R0MA 1VQPP 4IPYA 2KGCA 1KD1Q 3G1GA 4PXHB 2FQ1A 1RNIA 3G6EP 4U0CA 2JBGA 5EW5E 2LMLA 1QRJA 4COCA 5JPAA 1UJZA 3G29A 1EOQA 1KQSO 2PY8A 3CCSP 4COPA 2E1MA 2MR7A 2XZ0D 2JYGA 2GDXA 4HKGA 1BAJA 2JAZA 3G26A 2LIUA 2L0QA 5HGMA 2QNWA 2Z44A 2N6YA 2CGQA 1Q7YQ 3RG6C 3GZMA 2KGEA 3DS4A 1KLPA 1Q81Q 1YHQP 3CC7P 2OTLP 1GPJA 3EJEA 2JQ4A 2FVFA 2NO8A 1DV5A 2JYLA 1IUQA 4H2WC 2JO0A 3GJNA 2FAEA 2KOQA 2P9XA 1M90Q 2VLOA 2PEMA 2FQ0A 1ZNVA 3CPWO 3Q20A 3WBHA 2AVAA 1VQNP 2Z45A 1M1KQ 3H0DA 4WYMA 3U43A 3CXCO 1K73Q 2GZFA 5HGOA 2BHVA 4XFXA 4U0FA 2KODA 2L6EA 3CE7A 1VQ9P 2MVUA 3G4SP 2K5XA 1GXGA 2FHSC 3CCJP 3DTJA 2FVAA 3G0VA 1OR5A 5BS2A 1JJ2O 3CMAP 4QNBA 3G21A 2ROQA 1X3OA 4XROA 1EIAA 2EG5A 2XT1A 1HQBA 3I55P 5HGLA 2LIWA 4BPFA 1W2BO 1A8OA 2VLQA 3CMEP 3NTEA 1NJIQ 5I4TG 3NY7B 3LRYA 2GDYA 2GYKA 2N50A 2LOLA 2Z46A 1HY8A 2KW2A 2GDWA 2EHTA 3H4EA 2PENA 4U0DA 2GZJA 2GZGA 2LPKA 4NEOA 4QKOA 2KOSA 1MZ8A 1VQOP 5F2NA 2EHSA 2JU2A 2VLNA 2DGYA 2N6ZA 2K2QA 1DNYA 2N98A 1VQMP 3DPHA 2QEXP 2M5RA 1QVGO 1RO0A 4UHPB 2MR8A 2PEQA 2L9FA 1K9MQ 2ERHA 3HYBA 2VSQA 3DS5A 3CCQP 3EJDA 2KG6A 2LL8A 2M8NA 2PEKA 1T8KA 2OTJP 1L0HA 3CCRP 4U0BA 4F37A 1EMVA 2KR5A 3LMOA 1S72P 5KP6B 2LTEA 2XXMA 3CCUP 2CWOA 2PEIA 1VQLP 3RG2A 2K0DX 1BXIA 3DS0A 1GXHA 2MY5A 4PH1A 2ONTA 2AFDA 2BUOA 2FVEA 2LKIA 4PH0A 2GZEA 2JU1A 2MVVA 3HZQA 1RO2A 1AUMA 5F2OA 3MGEA 2KG9A 4BPHA
chains in the Genus database with same CATH topology
1E0HA 2K0DX 1BXIA 2VLOA 1MZ8A 1GXHA 2GZIA 2K5XA 7CEIA 2ERHA 1ZNVA 2VLQA 1GXGA 4F37A 2VLNA 1EMVA 1UNKA 2NO8A 3GKLC 2JAZA 2GYKA 1CEIA 2WPTA 2GZEA 3U43A 2JBGA 2VLPA 5EW5E 1IMQA 1IMPA 2JB0A 1AYIA 4UHPB 3GJNA 1FR2A 2GZFA 2GZJA 2GZGA 4QKOA 1UJZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E0H A;  2K0D X;  1BXI A;  2VLO A;  1MZ8 A;  1GXH A;  2GZI A;  2K5X A;  7CEI A;  2ERH A;  1ZNV A;  2VLQ A;  1GXG A;  4F37 A;  2VLN A;  1EMV A;  1UNK A;  2NO8 A;  3GKL C;  2JAZ A;  2GYK A;  1CEI A;  2WPT A;  2GZE A;  3U43 A;  2JBG A;  2VLP A;  5EW5 E;  1IMQ A;  1IMP A;  2JB0 A;  1AYI A;  4UHP B;  3GJN A;  1FR2 A;  2GZF A;  2GZJ A;  2GZG A;  4QKO A;  1UJZ A; 
#chains in the Genus database with same CATH topology
 1NQ4 A;  2CNR A;  3G71 P;  2MF4 A;  3CD6 P;  2L4B A;  4U0A A;  2OAR A;  2FQ2 A;  2KOR A;  2KGA A;  1Q86 Q;  3GKL C;  3G28 A;  1F80 D;  3CCE P;  1Q82 Q;  2L22 A;  2QA4 P;  2M8L A;  1YIT P;  3GZL A;  1IMP A;  2LF4 A;  3DS1 A;  2DNW A;  2KOO A;  3CCV P;  1VQ7 P;  2FAC A;  2GZI A;  4H2X C;  7CEI A;  1A43 A;  2AF8 A;  2KOP A;  5HGN A;  3B4Q A;  3VRL C;  2XZ1 C;  1AF8 A;  2X2B A;  3CCL P;  2PEJ A;  3E2D A;  2JB0 A;  4GR6 A;  1FR2 A;  4XRQ A;  5F2K A;  2XV6 A;  1M6E X;  4IZ6 A;  3P05 A;  2M8P A;  2KG8 A;  2FAD A;  2WPT A;  4XFZ A;  3B5I A;  5HV8 A;  1YI2 P;  3CCM P;  5KP7 B;  2K93 A;  1IMQ A;  3CC4 P;  1ACP A;  1VQK P;  2EFJ A;  2CQ8 A;  4BPG A;  1VQ4 P;  2KWL A;  2EIA A;  4U0E A;  1VHN A;  1KC8 Q;  4GR2 A;  4PWV B;  4MRT C;  1YJW P;  1N8R Q;  5HVC A;  1E6J P;  1K30 A;  1VQ5 P;  5CZD B;  3H47 A;  2PNG A;  3G1I A;  2K94 A;  2N5H A;  1YJN P;  2K92 A;  1E0H A;  4M0I A;  1K8A Q;  2JGP A;  3CC2 P;  1D1D A;  2K0Y A;  2PEO A;  1VQ6 P;  1YIJ P;  4DG9 A;  3I56 P;  1M74 A;  1CEI A;  1YJ9 P;  4XFY A;  3DS2 A;  1VQ8 P;  1VKU A;  5KP8 B;  2N5I A;  4H2Y C;  1AYI A;  1L0I A;  3OW2 O;  2CG5 B;  2AFE A;  1Z6M A;  1QVF O;  2KGD A;  3EJB A;  1UNK A;  1ZMB A;  2K0X A;  3M1M A;  5EJD A;  1M6N A;  5BS1 A;  4CA3 A;  2VLP A;  5DCK A;  3DS3 A;  2MD9 A;  4R0M A;  1VQP P;  4IPY A;  2KGC A;  1KD1 Q;  3G1G A;  4PXH B;  2FQ1 A;  1RNI A;  3G6E P;  4U0C A;  2JBG A;  5EW5 E;  2LML A;  1QRJ A;  4COC A;  5JPA A;  1UJZ A;  3G29 A;  1EOQ A;  1KQS O;  2PY8 A;  3CCS P;  4COP A;  2E1M A;  2MR7 A;  2XZ0 D;  2JYG A;  2GDX A;  4HKG A;  1BAJ A;  2JAZ A;  3G26 A;  2LIU A;  2L0Q A;  5HGM A;  2QNW A;  2Z44 A;  2N6Y A;  2CGQ A;  1Q7Y Q;  3RG6 C;  3GZM A;  2KGE A;  3DS4 A;  1KLP A;  1Q81 Q;  1YHQ P;  3CC7 P;  2OTL P;  1GPJ A;  3EJE A;  2JQ4 A;  2FVF A;  2NO8 A;  1DV5 A;  2JYL A;  1IUQ A;  4H2W C;  2JO0 A;  3GJN A;  2FAE A;  2KOQ A;  2P9X A;  1M90 Q;  2VLO A;  2PEM A;  2FQ0 A;  1ZNV A;  3CPW O;  3Q20 A;  3WBH A;  2AVA A;  1VQN P;  2Z45 A;  1M1K Q;  3H0D A;  4WYM A;  3U43 A;  3CXC O;  1K73 Q;  2GZF A;  5HGO A;  2BHV A;  4XFX A;  4U0F A;  2KOD A;  2L6E A;  3CE7 A;  1VQ9 P;  2MVU A;  3G4S P;  2K5X A;  1GXG A;  2FHS C;  3CCJ P;  3DTJ A;  2FVA A;  3G0V A;  1OR5 A;  5BS2 A;  1JJ2 O;  3CMA P;  4QNB A;  3G21 A;  2ROQ A;  1X3O A;  4XRO A;  1EIA A;  2EG5 A;  2XT1 A;  1HQB A;  3I55 P;  5HGL A;  2LIW A;  4BPF A;  1W2B O;  1A8O A;  2VLQ A;  3CME P;  3NTE A;  1NJI Q;  5I4T G;  3NY7 B;  3LRY A;  2GDY A;  2GYK A;  2N50 A;  2LOL A;  2Z46 A;  1HY8 A;  2KW2 A;  2GDW A;  2EHT A;  3H4E A;  2PEN A;  4U0D A;  2GZJ A;  2GZG A;  2LPK A;  4NEO A;  4QKO A;  2KOS A;  1MZ8 A;  1VQO P;  5F2N A;  2EHS A;  2JU2 A;  2VLN A;  2DGY A;  2N6Z A;  2K2Q A;  1DNY A;  2N98 A;  1VQM P;  3DPH A;  2QEX P;  2M5R A;  1QVG O;  1RO0 A;  4UHP B;  2MR8 A;  2PEQ A;  2L9F A;  1K9M Q;  2ERH A;  3HYB A;  2VSQ A;  3DS5 A;  3CCQ P;  3EJD A;  2KG6 A;  2LL8 A;  2M8N A;  2PEK A;  1T8K A;  2OTJ P;  1L0H A;  3CCR P;  4U0B A;  4F37 A;  1EMV A;  2KR5 A;  3LMO A;  1S72 P;  5KP6 B;  2LTE A;  2XXM A;  3CCU P;  2CWO A;  2PEI A;  1VQL P;  3RG2 A;  2K0D X;  1BXI A;  3DS0 A;  1GXH A;  2MY5 A;  4PH1 A;  2ONT A;  2AFD A;  2BUO A;  2FVE A;  2LKI A;  4PH0 A;  2GZE A;  2JU1 A;  2MVV A;  3HZQ A;  1RO2 A;  1AUM A;  5F2O A;  3MGE A;  2KG9 A;  4BPH A; 
#chains in the Genus database with same CATH homology
 1E0H A;  2K0D X;  1BXI A;  2VLO A;  1MZ8 A;  1GXH A;  2GZI A;  2K5X A;  7CEI A;  2ERH A;  1ZNV A;  2VLQ A;  1GXG A;  4F37 A;  2VLN A;  1EMV A;  1UNK A;  2NO8 A;  3GKL C;  2JAZ A;  2GYK A;  1CEI A;  2WPT A;  2GZE A;  3U43 A;  2JBG A;  2VLP A;  5EW5 E;  1IMQ A;  1IMP A;  2JB0 A;  1AYI A;  4UHP B;  3GJN A;  1FR2 A;  2GZF A;  2GZJ A;  2GZG A;  4QKO A;  1UJZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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