4F37A

Structure of the tethered n-terminus of alzheimer's disease a peptide
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
102
structure length
102
Chain Sequence
DAEFRHDSGYEVHHQKSELKNSISDYTEAEFVQLLKEIEKENVAATDDVLDVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKPGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Colicin-E7 immunity protein
publication title Structural studies of the tethered N-terminus of the Alzheimer's disease amyloid-beta peptide.
pubmed doi rcsb
source organism Mus musculus
total genus 11
structure length 102
sequence length 102
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 4f37A00
1BXIA 3GJNA 1UNKA 2JB0A 2WPTA 2K0DX 1ZNVA 7CEIA 2GZIA 1E0HA 1CEIA 1IMQA 1UJZA 2GZEA 2NO8A 3GKLC 5EW5E 4UHPB 2VLOA 2ERHA 4F37A 2VLPA 1MZ8A 2GZFA 3U43A 2VLQA 1GXGA 1EMVA 2K5XA 2JBGA 2GZGA 1IMPA 2VLNA 2GZJA 1AYIA 1FR2A 2JAZA 1GXHA 4QKOA 2GYKA
chains in the Genus database with same CATH superfamily
1BXIA 1YHQP 3CCLP 2VSQA 2K0DX 3G29A 1L0HA 2Z44A 2AF8A 2ONTA 2XV6A 2XZ1C 5KP8B 1M90Q 1YIJP 1NQ4A 4U0FA 2LOLA 2KR5A 1Q7YQ 1FR2A 2JAZA 2L4BA 1GXHA 2KGEA 2K93A 2KOPA 2N6ZA 3LMOA 1KD1Q 1CEIA 5KP6B 2FVAA 2K0XA 2MR8A 5HV8A 3G26A 1QVFO 3HZQA 3CE7A 5BS2A 1ZMBA 2CNRA 2KOSA 1M1KQ 5HGLA 4DG9A 4H2WC 1F80D 2KGAA 5F2OA 1RNIA 5I4TG 1M74A 2CG5B 2CGQA 3NTEA 3U43A 1X3OA 2FVFA 1EMVA 1HQBA 2X2BA 5HGNA 1DV5A 1NJIQ 5BS1A 2JGPA 2KODA 3CCVP 2L9FA 3CCJP 2L0QA 4GR6A 4H2YC 2GDWA 2LPKA 2N98A 2PENA 2K0YA 1IUQA 2VLQA 2M8LA 1M6NA 3P05A 2K2QA 3DS3A 2PEKA 1M6EX 4UHPB 1VQMP 2PEIA 3CD6P 3CCUP 3EJDA 1Q82Q 1VQPP 2ROQA 2M8PA 3H4EA 2N5HA 3CC4P 2LIWA 2GZFA 4BPGA 4COCA 2PNGA 3H47A 5HGOA 3G71P 3G21A 4PWVB 4NEOA 2BHVA 1QRJA 1UNKA 2KGCA 3CCSP 2XZ0D 2AFEA 5JPAA 2GDXA 2EIAA 2MVUA 3WBHA 2OTLP 2E1MA 2GDYA 2DNWA 2KORA 1YJNP 2CWOA 2N6YA 3Q20A 4HKGA 1W2BO 1K9MQ 5KP7B 3EJEA 4IZ6A 2ERHA 4XFZA 4R0MA 3CXCO 1MZ8A 3EJBA 2JYGA 2K5XA 1AUMA 2GZJA 3CMEP 2LF4A 4BPFA 1ACPA 3CMAP 1Z6MA 3OW2O 2KG8A 2QA4P 1K30A 3DS2A 2KOOA 2BUOA 3GZLA 3CCMP 1UJZA 5EW5E 2EG5A 3B5IA 2FQ0A 2VLPA 3DS4A 3GZMA 3MGEA 4U0EA 4BPHA 4H2XC 1OR5A 5DCKA 4XRQA 2VLNA 4M0IA 4CA3A 2KOQA 1S72P 2GYKA 1K73Q 3CCRP 3E2DA 2JYLA 1K8AQ 2OARA 2OTJP 5HGMA 2AVAA 3G1GA 2JU1A 2DGYA 3VRLC 1VQNP 3RG6C 2P9XA 2FVEA 2XXMA 2KW2A 1JJ2O 2LMLA 1ZNVA 3CPWO 3CC2P 4IPYA 4XFXA 4XFYA 4U0CA 2PEMA 1GXGA 2M5RA 3G28A 1KC8Q 4QKOA 3LRYA 3DS0A 2L22A 1VQOP 3DTJA 2MY5A 2LTEA 1VHNA 1YJWP 2GZEA 3GKLC 1RO2A 2K92A 1YJ9P 4F37A 3DPHA 2PEOA 1IMPA 1HY8A 1AYIA 2MVVA 2N5IA 3G0VA 2K94A 2FQ2A 5HVCA 2JO0A 1Q86Q 1IMQA 2VLOA 1AF8A 2EFJA 1KLPA 4U0DA 2JBGA 2MF4A 1VKUA 2QEXP 2KG6A 3CCQP 2LIUA 1YITP 2KWLA 1A8OA 2FADA 1EOQA 7CEIA 2LKIA 2JU2A 2PEQA 2PY8A 1GPJA 1A43A 1YI2P 3I56P 2GZGA 2JQ4A 3CC7P 4PH1A 2PEJA 1VQKP 3G1IA 1QVGO 1RO0A 2JB0A 4MRTC 2FACA 1L0IA 2GZIA 1VQ7P 1E0HA 4WYMA 2NO8A 2CQ8A 2L6EA 1KQSO 3HYBA 2MD9A 4PXHB 3RG2A 1T8KA 3G4SP 2KGDA 2EHSA 2EHTA 3I55P 1N8RQ 1VQ8P 1VQ5P 3NY7B 3G6EP 3GJNA 5F2NA 4XROA 1DNYA 3DS1A 2M8NA 2AFDA 2N50A 4PH0A 2FHSC 3CCEP 2Z45A 1VQLP 5F2KA 1E6JP 4QNBA 2Z46A 2LL8A 4COPA 5CZDB 4U0BA 2QNWA 2WPTA 3DS5A 5EJDA 2FAEA 1Q81Q 1EIAA 3M1MA 2KG9A 1VQ6P 3H0DA 2FQ1A 2XT1A 1VQ4P 4U0AA 3B4QA 1BAJA 1VQ9P 4GR2A 1D1DA 2MR7A
chains in the Genus database with same CATH topology
1BXIA 3GJNA 1UNKA 2JB0A 2WPTA 2K0DX 1ZNVA 7CEIA 2GZIA 1E0HA 1CEIA 1IMQA 1UJZA 2GZEA 2NO8A 3GKLC 5EW5E 4UHPB 2VLOA 2ERHA 4F37A 2VLPA 1MZ8A 2GZFA 3U43A 2VLQA 1GXGA 1EMVA 2K5XA 2JBGA 2GZGA 1IMPA 2VLNA 2GZJA 1AYIA 1FR2A 2JAZA 1GXHA 4QKOA 2GYKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BXI A;  3GJN A;  1UNK A;  2JB0 A;  2WPT A;  2K0D X;  1ZNV A;  7CEI A;  2GZI A;  1E0H A;  1CEI A;  1IMQ A;  1UJZ A;  2GZE A;  2NO8 A;  3GKL C;  5EW5 E;  4UHP B;  2VLO A;  2ERH A;  4F37 A;  2VLP A;  1MZ8 A;  2GZF A;  3U43 A;  2VLQ A;  1GXG A;  1EMV A;  2K5X A;  2JBG A;  2GZG A;  1IMP A;  2VLN A;  2GZJ A;  1AYI A;  1FR2 A;  2JAZ A;  1GXH A;  4QKO A;  2GYK A; 
#chains in the Genus database with same CATH topology
 1BXI A;  1YHQ P;  3CCL P;  2VSQ A;  2K0D X;  3G29 A;  1L0H A;  2Z44 A;  2AF8 A;  2ONT A;  2XV6 A;  2XZ1 C;  5KP8 B;  1M90 Q;  1YIJ P;  1NQ4 A;  4U0F A;  2LOL A;  2KR5 A;  1Q7Y Q;  1FR2 A;  2JAZ A;  2L4B A;  1GXH A;  2KGE A;  2K93 A;  2KOP A;  2N6Z A;  3LMO A;  1KD1 Q;  1CEI A;  5KP6 B;  2FVA A;  2K0X A;  2MR8 A;  5HV8 A;  3G26 A;  1QVF O;  3HZQ A;  3CE7 A;  5BS2 A;  1ZMB A;  2CNR A;  2KOS A;  1M1K Q;  5HGL A;  4DG9 A;  4H2W C;  1F80 D;  2KGA A;  5F2O A;  1RNI A;  5I4T G;  1M74 A;  2CG5 B;  2CGQ A;  3NTE A;  3U43 A;  1X3O A;  2FVF A;  1EMV A;  1HQB A;  2X2B A;  5HGN A;  1DV5 A;  1NJI Q;  5BS1 A;  2JGP A;  2KOD A;  3CCV P;  2L9F A;  3CCJ P;  2L0Q A;  4GR6 A;  4H2Y C;  2GDW A;  2LPK A;  2N98 A;  2PEN A;  2K0Y A;  1IUQ A;  2VLQ A;  2M8L A;  1M6N A;  3P05 A;  2K2Q A;  3DS3 A;  2PEK A;  1M6E X;  4UHP B;  1VQM P;  2PEI A;  3CD6 P;  3CCU P;  3EJD A;  1Q82 Q;  1VQP P;  2ROQ A;  2M8P A;  3H4E A;  2N5H A;  3CC4 P;  2LIW A;  2GZF A;  4BPG A;  4COC A;  2PNG A;  3H47 A;  5HGO A;  3G71 P;  3G21 A;  4PWV B;  4NEO A;  2BHV A;  1QRJ A;  1UNK A;  2KGC A;  3CCS P;  2XZ0 D;  2AFE A;  5JPA A;  2GDX A;  2EIA A;  2MVU A;  3WBH A;  2OTL P;  2E1M A;  2GDY A;  2DNW A;  2KOR A;  1YJN P;  2CWO A;  2N6Y A;  3Q20 A;  4HKG A;  1W2B O;  1K9M Q;  5KP7 B;  3EJE A;  4IZ6 A;  2ERH A;  4XFZ A;  4R0M A;  3CXC O;  1MZ8 A;  3EJB A;  2JYG A;  2K5X A;  1AUM A;  2GZJ A;  3CME P;  2LF4 A;  4BPF A;  1ACP A;  3CMA P;  1Z6M A;  3OW2 O;  2KG8 A;  2QA4 P;  1K30 A;  3DS2 A;  2KOO A;  2BUO A;  3GZL A;  3CCM P;  1UJZ A;  5EW5 E;  2EG5 A;  3B5I A;  2FQ0 A;  2VLP A;  3DS4 A;  3GZM A;  3MGE A;  4U0E A;  4BPH A;  4H2X C;  1OR5 A;  5DCK A;  4XRQ A;  2VLN A;  4M0I A;  4CA3 A;  2KOQ A;  1S72 P;  2GYK A;  1K73 Q;  3CCR P;  3E2D A;  2JYL A;  1K8A Q;  2OAR A;  2OTJ P;  5HGM A;  2AVA A;  3G1G A;  2JU1 A;  2DGY A;  3VRL C;  1VQN P;  3RG6 C;  2P9X A;  2FVE A;  2XXM A;  2KW2 A;  1JJ2 O;  2LML A;  1ZNV A;  3CPW O;  3CC2 P;  4IPY A;  4XFX A;  4XFY A;  4U0C A;  2PEM A;  1GXG A;  2M5R A;  3G28 A;  1KC8 Q;  4QKO A;  3LRY A;  3DS0 A;  2L22 A;  1VQO P;  3DTJ A;  2MY5 A;  2LTE A;  1VHN A;  1YJW P;  2GZE A;  3GKL C;  1RO2 A;  2K92 A;  1YJ9 P;  4F37 A;  3DPH A;  2PEO A;  1IMP A;  1HY8 A;  1AYI A;  2MVV A;  2N5I A;  3G0V A;  2K94 A;  2FQ2 A;  5HVC A;  2JO0 A;  1Q86 Q;  1IMQ A;  2VLO A;  1AF8 A;  2EFJ A;  1KLP A;  4U0D A;  2JBG A;  2MF4 A;  1VKU A;  2QEX P;  2KG6 A;  3CCQ P;  2LIU A;  1YIT P;  2KWL A;  1A8O A;  2FAD A;  1EOQ A;  7CEI A;  2LKI A;  2JU2 A;  2PEQ A;  2PY8 A;  1GPJ A;  1A43 A;  1YI2 P;  3I56 P;  2GZG A;  2JQ4 A;  3CC7 P;  4PH1 A;  2PEJ A;  1VQK P;  3G1I A;  1QVG O;  1RO0 A;  2JB0 A;  4MRT C;  2FAC A;  1L0I A;  2GZI A;  1VQ7 P;  1E0H A;  4WYM A;  2NO8 A;  2CQ8 A;  2L6E A;  1KQS O;  3HYB A;  2MD9 A;  4PXH B;  3RG2 A;  1T8K A;  3G4S P;  2KGD A;  2EHS A;  2EHT A;  3I55 P;  1N8R Q;  1VQ8 P;  1VQ5 P;  3NY7 B;  3G6E P;  3GJN A;  5F2N A;  4XRO A;  1DNY A;  3DS1 A;  2M8N A;  2AFD A;  2N50 A;  4PH0 A;  2FHS C;  3CCE P;  2Z45 A;  1VQL P;  5F2K A;  1E6J P;  4QNB A;  2Z46 A;  2LL8 A;  4COP A;  5CZD B;  4U0B A;  2QNW A;  2WPT A;  3DS5 A;  5EJD A;  2FAE A;  1Q81 Q;  1EIA A;  3M1M A;  2KG9 A;  1VQ6 P;  3H0D A;  2FQ1 A;  2XT1 A;  1VQ4 P;  4U0A A;  3B4Q A;  1BAJ A;  1VQ9 P;  4GR2 A;  1D1D A;  2MR7 A; 
#chains in the Genus database with same CATH homology
 1BXI A;  3GJN A;  1UNK A;  2JB0 A;  2WPT A;  2K0D X;  1ZNV A;  7CEI A;  2GZI A;  1E0H A;  1CEI A;  1IMQ A;  1UJZ A;  2GZE A;  2NO8 A;  3GKL C;  5EW5 E;  4UHP B;  2VLO A;  2ERH A;  4F37 A;  2VLP A;  1MZ8 A;  2GZF A;  3U43 A;  2VLQ A;  1GXG A;  1EMV A;  2K5X A;  2JBG A;  2GZG A;  1IMP A;  2VLN A;  2GZJ A;  1AYI A;  1FR2 A;  2JAZ A;  1GXH A;  4QKO A;  2GYK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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