4F37A

Structure of the tethered n-terminus of alzheimer's disease a peptide
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
102
structure length
102
Chain Sequence
DAEFRHDSGYEVHHQKSELKNSISDYTEAEFVQLLKEIEKENVAATDDVLDVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKPGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
source organism Mus musculus
publication title Structural studies of the tethered N-terminus of the Alzheimer's disease amyloid-beta peptide.
pubmed doi rcsb
molecule keywords Colicin-E7 immunity protein
total genus 11
structure length 102
sequence length 102
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 4f37A00
1UJZA 1GXGA 1UNKA 1FR2A 2GZGA 1IMPA 2GZFA 2VLNA 1EMVA 2ERHA 5EW5E 4QKOA 2K5XA 4F37A 2GZJA 2VLPA 4UHPB 1BXIA 1IMQA 2JBGA 3GJNA 7CEIA 2K0DX 1E0HA 3GKLC 1CEIA 1AYIA 2NO8A 1ZNVA 1MZ8A 2JB0A 2WPTA 1GXHA 2VLOA 2GZIA 2GZEA 2GYKA 2VLQA 3U43A 2JAZA
chains in the Genus database with same CATH superfamily
2KGEA 2K5XA 2JO0A 1YI2P 2K0DX 4IZ6A 2KOSA 1M74A 2AF8A 2MR8A 2XT1A 2XZ0D 1NJIQ 3P05A 2L9FA 1VQMP 5KP7B 3RG2A 2LTEA 3H4EA 3HYBA 4H2XC 3CD6P 2VSQA 4PXHB 4COCA 4U0FA 1W2BO 3CE7A 1QRJA 2M8NA 1K30A 3CC4P 5HVCA 2JB0A 1S72P 4XFXA 2PEIA 2KOQA 3DS5A 3U43A 5F2KA 2CNRA 3NY7B 2MVUA 3CCLP 1FR2A 3DS0A 3CC7P 3G21A 3I55P 2XV6A 3GZMA 3MGEA 2GDXA 1Q81Q 3CXCO 1CEIA 2NO8A 2KG8A 2EG5A 2M5RA 1HQBA 2PY8A 3DTJA 2FVAA 2FHSC 1DNYA 1L0HA 2K93A 1VQ8P 3H0DA 3G4SP 1UJZA 1VQOP 5HGMA 3LMOA 3CMEP 1KC8Q 4UHPB 3GZLA 2PEKA 2EIAA 1K8AQ 3OW2O 2FVEA 1K9MQ 2LMLA 3CCMP 2FAEA 2LIUA 4GR6A 1BAJA 2XZ1C 2MY5A 3EJDA 5KP8B 2E1MA 1EMVA 3CMAP 4F37A 4H2YC 2KOPA 2JYGA 1M6NA 1F80D 1YJWP 2OTJP 2QNWA 2K0YA 4M0IA 3Q20A 1VQKP 2JQ4A 3CCSP 1M1KQ 2FQ1A 1IMQA 4U0AA 2PEQA 3CC2P 2VLOA 3CCQP 2GDYA 3RG6C 2GZEA 1Q82Q 5HV8A 2M8LA 2GZFA 5BS1A 2CG5B 2K92A 2JU1A 5HGOA 2CGQA 4COPA 2EHSA 3G28A 1OR5A 2DGYA 2JAZA 2GZGA 1EIAA 4QKOA 4XFZA 5BS2A 3B5IA 3GJNA 5HGNA 1KLPA 2P9XA 3G1GA 2CQ8A 2GZIA 4U0BA 1YJNP 3DS3A 2FQ0A 3B4QA 2LPKA 4U0CA 1YITP 2OTLP 2VLNA 2ERHA 5EW5E 3DS4A 4IPYA 2LOLA 2KODA 5HGLA 5EJDA 3GKLC 2Z45A 1Q7YQ 1N8RQ 1ZMBA 4BPHA 5F2NA 2Z46A 4H2WC 4BPFA 2DNWA 1RO0A 3VRLC 2AFEA 2VLQA 4U0EA 3G29A 1IUQA 2K94A 2Z44A 3CCJP 2AFDA 2EHTA 1L0IA 4U0DA 3NTEA 1AYIA 2KWLA 2LF4A 3HZQA 2FACA 2KG9A 2WPTA 2L0QA 1HY8A 2JYLA 1AF8A 2MVVA 2FADA 2ROQA 4MRTC 3CCRP 1GXGA 4DG9A 2MD9A 2MR7A 1D1DA 3G0VA 4BPGA 3WBHA 2VLPA 2JBGA 1T8KA 2L4BA 5I4TG 1VQLP 1YIJP 2GDWA 4XFYA 2BUOA 2KG6A 1QVFO 3G26A 3DS2A 2MF4A 1Q86Q 2KW2A 2PEMA 2GZJA 1YHQP 2ONTA 2KORA 2KGDA 1K73Q 2L6EA 4R0MA 1RNIA 1KD1Q 1VQ4P 1VQ5P 1EOQA 1YJ9P 2KGCA 4WYMA 1AUMA 4NEOA 4PWVB 1A8OA 1QVGO 1IMPA 4PH0A 3LRYA 3DPHA 2FVFA 3DS1A 1M90Q 1VQ9P 1Z6MA 2L22A 2KR5A 2LKIA 1NQ4A 2GYKA 2K0XA 2KOOA 4PH1A 5CZDB 3CCVP 2CWOA 1ACPA 1VQ6P 3G1IA 1DV5A 3G6EP 7CEIA 2QA4P 2N6ZA 1E0HA 5JPAA 1M6EX 1ZNVA 2FQ2A 3EJEA 1VHNA 2PEJA 2M8PA 2X2BA 1VQ7P 2EFJA 2JU2A 2N50A 1RO2A 1VKUA 2KGAA 1BXIA 2BHVA 3I56P 3G71P 5F2OA 2QEXP 4XROA 3EJBA 1GPJA 2PEOA 1A43A 4XRQA 2LIWA 2LL8A 2N5IA 4QNBA 4HKGA 5KP6B 1JJ2O 5DCKA 3CCEP 2PNGA 1VQNP 2JGPA 1UNKA 3H47A 4GR2A 2N5HA 3CPWO 2N6YA 1X3OA 3M1MA 1VQPP 2OARA 3CCUP 1KQSO 2XXMA 4CA3A 1MZ8A 1GXHA 2PENA 2N98A 3E2DA 1E6JP 2AVAA 2K2QA
chains in the Genus database with same CATH topology
1UJZA 1GXGA 1UNKA 1FR2A 2GZGA 1IMPA 2GZFA 2VLNA 1EMVA 2ERHA 5EW5E 4QKOA 2K5XA 4F37A 2GZJA 2VLPA 4UHPB 1BXIA 1IMQA 2JBGA 3GJNA 7CEIA 2K0DX 1E0HA 3GKLC 1CEIA 1AYIA 2NO8A 1ZNVA 1MZ8A 2JB0A 2WPTA 1GXHA 2VLOA 2GZIA 2GZEA 2GYKA 2VLQA 3U43A 2JAZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UJZ A;  1GXG A;  1UNK A;  1FR2 A;  2GZG A;  1IMP A;  2GZF A;  2VLN A;  1EMV A;  2ERH A;  5EW5 E;  4QKO A;  2K5X A;  4F37 A;  2GZJ A;  2VLP A;  4UHP B;  1BXI A;  1IMQ A;  2JBG A;  3GJN A;  7CEI A;  2K0D X;  1E0H A;  3GKL C;  1CEI A;  1AYI A;  2NO8 A;  1ZNV A;  1MZ8 A;  2JB0 A;  2WPT A;  1GXH A;  2VLO A;  2GZI A;  2GZE A;  2GYK A;  2VLQ A;  3U43 A;  2JAZ A; 
#chains in the Genus database with same CATH topology
 2KGE A;  2K5X A;  2JO0 A;  1YI2 P;  2K0D X;  4IZ6 A;  2KOS A;  1M74 A;  2AF8 A;  2MR8 A;  2XT1 A;  2XZ0 D;  1NJI Q;  3P05 A;  2L9F A;  1VQM P;  5KP7 B;  3RG2 A;  2LTE A;  3H4E A;  3HYB A;  4H2X C;  3CD6 P;  2VSQ A;  4PXH B;  4COC A;  4U0F A;  1W2B O;  3CE7 A;  1QRJ A;  2M8N A;  1K30 A;  3CC4 P;  5HVC A;  2JB0 A;  1S72 P;  4XFX A;  2PEI A;  2KOQ A;  3DS5 A;  3U43 A;  5F2K A;  2CNR A;  3NY7 B;  2MVU A;  3CCL P;  1FR2 A;  3DS0 A;  3CC7 P;  3G21 A;  3I55 P;  2XV6 A;  3GZM A;  3MGE A;  2GDX A;  1Q81 Q;  3CXC O;  1CEI A;  2NO8 A;  2KG8 A;  2EG5 A;  2M5R A;  1HQB A;  2PY8 A;  3DTJ A;  2FVA A;  2FHS C;  1DNY A;  1L0H A;  2K93 A;  1VQ8 P;  3H0D A;  3G4S P;  1UJZ A;  1VQO P;  5HGM A;  3LMO A;  3CME P;  1KC8 Q;  4UHP B;  3GZL A;  2PEK A;  2EIA A;  1K8A Q;  3OW2 O;  2FVE A;  1K9M Q;  2LML A;  3CCM P;  2FAE A;  2LIU A;  4GR6 A;  1BAJ A;  2XZ1 C;  2MY5 A;  3EJD A;  5KP8 B;  2E1M A;  1EMV A;  3CMA P;  4F37 A;  4H2Y C;  2KOP A;  2JYG A;  1M6N A;  1F80 D;  1YJW P;  2OTJ P;  2QNW A;  2K0Y A;  4M0I A;  3Q20 A;  1VQK P;  2JQ4 A;  3CCS P;  1M1K Q;  2FQ1 A;  1IMQ A;  4U0A A;  2PEQ A;  3CC2 P;  2VLO A;  3CCQ P;  2GDY A;  3RG6 C;  2GZE A;  1Q82 Q;  5HV8 A;  2M8L A;  2GZF A;  5BS1 A;  2CG5 B;  2K92 A;  2JU1 A;  5HGO A;  2CGQ A;  4COP A;  2EHS A;  3G28 A;  1OR5 A;  2DGY A;  2JAZ A;  2GZG A;  1EIA A;  4QKO A;  4XFZ A;  5BS2 A;  3B5I A;  3GJN A;  5HGN A;  1KLP A;  2P9X A;  3G1G A;  2CQ8 A;  2GZI A;  4U0B A;  1YJN P;  3DS3 A;  2FQ0 A;  3B4Q A;  2LPK A;  4U0C A;  1YIT P;  2OTL P;  2VLN A;  2ERH A;  5EW5 E;  3DS4 A;  4IPY A;  2LOL A;  2KOD A;  5HGL A;  5EJD A;  3GKL C;  2Z45 A;  1Q7Y Q;  1N8R Q;  1ZMB A;  4BPH A;  5F2N A;  2Z46 A;  4H2W C;  4BPF A;  2DNW A;  1RO0 A;  3VRL C;  2AFE A;  2VLQ A;  4U0E A;  3G29 A;  1IUQ A;  2K94 A;  2Z44 A;  3CCJ P;  2AFD A;  2EHT A;  1L0I A;  4U0D A;  3NTE A;  1AYI A;  2KWL A;  2LF4 A;  3HZQ A;  2FAC A;  2KG9 A;  2WPT A;  2L0Q A;  1HY8 A;  2JYL A;  1AF8 A;  2MVV A;  2FAD A;  2ROQ A;  4MRT C;  3CCR P;  1GXG A;  4DG9 A;  2MD9 A;  2MR7 A;  1D1D A;  3G0V A;  4BPG A;  3WBH A;  2VLP A;  2JBG A;  1T8K A;  2L4B A;  5I4T G;  1VQL P;  1YIJ P;  2GDW A;  4XFY A;  2BUO A;  2KG6 A;  1QVF O;  3G26 A;  3DS2 A;  2MF4 A;  1Q86 Q;  2KW2 A;  2PEM A;  2GZJ A;  1YHQ P;  2ONT A;  2KOR A;  2KGD A;  1K73 Q;  2L6E A;  4R0M A;  1RNI A;  1KD1 Q;  1VQ4 P;  1VQ5 P;  1EOQ A;  1YJ9 P;  2KGC A;  4WYM A;  1AUM A;  4NEO A;  4PWV B;  1A8O A;  1QVG O;  1IMP A;  4PH0 A;  3LRY A;  3DPH A;  2FVF A;  3DS1 A;  1M90 Q;  1VQ9 P;  1Z6M A;  2L22 A;  2KR5 A;  2LKI A;  1NQ4 A;  2GYK A;  2K0X A;  2KOO A;  4PH1 A;  5CZD B;  3CCV P;  2CWO A;  1ACP A;  1VQ6 P;  3G1I A;  1DV5 A;  3G6E P;  7CEI A;  2QA4 P;  2N6Z A;  1E0H A;  5JPA A;  1M6E X;  1ZNV A;  2FQ2 A;  3EJE A;  1VHN A;  2PEJ A;  2M8P A;  2X2B A;  1VQ7 P;  2EFJ A;  2JU2 A;  2N50 A;  1RO2 A;  1VKU A;  2KGA A;  1BXI A;  2BHV A;  3I56 P;  3G71 P;  5F2O A;  2QEX P;  4XRO A;  3EJB A;  1GPJ A;  2PEO A;  1A43 A;  4XRQ A;  2LIW A;  2LL8 A;  2N5I A;  4QNB A;  4HKG A;  5KP6 B;  1JJ2 O;  5DCK A;  3CCE P;  2PNG A;  1VQN P;  2JGP A;  1UNK A;  3H47 A;  4GR2 A;  2N5H A;  3CPW O;  2N6Y A;  1X3O A;  3M1M A;  1VQP P;  2OAR A;  3CCU P;  1KQS O;  2XXM A;  4CA3 A;  1MZ8 A;  1GXH A;  2PEN A;  2N98 A;  3E2D A;  1E6J P;  2AVA A;  2K2Q A; 
#chains in the Genus database with same CATH homology
 1UJZ A;  1GXG A;  1UNK A;  1FR2 A;  2GZG A;  1IMP A;  2GZF A;  2VLN A;  1EMV A;  2ERH A;  5EW5 E;  4QKO A;  2K5X A;  4F37 A;  2GZJ A;  2VLP A;  4UHP B;  1BXI A;  1IMQ A;  2JBG A;  3GJN A;  7CEI A;  2K0D X;  1E0H A;  3GKL C;  1CEI A;  1AYI A;  2NO8 A;  1ZNV A;  1MZ8 A;  2JB0 A;  2WPT A;  1GXH A;  2VLO A;  2GZI A;  2GZE A;  2GYK A;  2VLQ A;  3U43 A;  2JAZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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