5EW5E

Crystal structure of colicin e9 in complex with its immunity protein im9
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
83
structure length
83
Chain Sequence
b'LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Colicin-E9
publication title Structural and biophysical analysis of nuclease protein antibiotics.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Hydrolase
total genus 25
structure length 83
sequence length 83
chains with identical sequence F, G, H
ec nomenclature
pdb deposition date 2015-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 5ew5E00
1UNKA 4F37A 3GKLC 2K0DX 2JB0A 2GZFA 1MZ8A 2GZEA 1E0HA 1ZNVA 2ERHA 1EMVA 2JAZA 4UHPB 7CEIA 3GJNA 1BXIA 2GZGA 2VLNA 2GZJA 1GXGA 1GXHA 1CEIA 1FR2A 2JBGA 3U43A 1AYIA 2VLPA 2NO8A 2VLOA 1UJZA 2GZIA 2VLQA 2K5XA 4QKOA 2WPTA 1IMPA 1IMQA 2GYKA 5EW5E
chains in the Genus database with same CATH superfamily
3GKLC 3G6EP 1MZ8A 1VQPP 1ZNVA 1M1KQ 3G1IA 3CCVP 4QNBA 2MD9A 1Q7YQ 1VQLP 2CG5B 2L0QA 1T8KA 2FVAA 1AUMA 1N8RQ 2L6EA 2FHSC 2PENA 2JO0A 2MR7A 1NQ4A 5BS1A 1E6JP 3CCEP 1VQNP 2GZEA 1S72P 2ERHA 2JAZA 3GZMA 3HYBA 3CCLP 3CE7A 1VQ6P 3LMOA 2L4BA 1Z6MA 2PEIA 3G71P 2E1MA 1GPJA 3NY7B 1FR2A 2JYGA 3CCRP 2NO8A 2FQ1A 3OW2O 2KG8A 2K0YA 3G29A 2DGYA 1F80D 1ZMBA 5I4TG 1L0IA 1E0HA 1VQKP 2PEJA 1ACPA 2KG9A 1EOQA 2XZ1C 2JQ4A 2M8PA 3G21A 2CQ8A 2KOSA 1D1DA 3Q20A 5EW5E 2JU1A 1QRJA 3I56P 2MVVA 2ONTA 2EFJA 4BPHA 2PNGA 3EJBA 1YITP 5HGNA 2N6ZA 1VHNA 5KP7B 1BXIA 2AFEA 1BAJA 2QA4P 2LL8A 1Q86Q 1AYIA 1DV5A 2QEXP 3CMEP 4U0FA 2FADA 3G4SP 2JB0A 3CXCO 2XXMA 4XFYA 2L22A 2CGQA 3M1MA 2CWOA 1YI2P 3G0VA 1GXGA 2JBGA 1A8OA 4BPGA 2K0XA 2Z46A 2BHVA 2KR5A 2EHTA 2KGAA 2N6YA 4MRTC 2Z45A 4XFXA 2BUOA 2PEKA 3DS4A 3EJDA 2CNRA 2ROQA 3DS1A 2LPKA 2KOOA 2K0DX 4H2YC 4XROA 4XFZA 2LTEA 2XZ0D 4IZ6A 3H0DA 3CPWO 5HVCA 2OTJP 4H2WC 1A43A 1Q82Q 3DS3A 1M90Q 2KODA 1CEIA 1K9MQ 2K92A 2VLOA 4HKGA 3WBHA 3DS0A 3H47A 5F2KA 2KGCA 3CMAP 3CCUP 2MY5A 1K73Q 4UHPB 1KC8Q 4U0AA 4U0DA 5HGMA 2XV6A 4COCA 1K8AQ 1YJNP 5DCKA 2GZIA 4IPYA 2OTLP 3P05A 2PY8A 1VQ7P 3HZQA 2FACA 1RO0A 2KOPA 3VRLC 2AF8A 2LKIA 1HQBA 2FQ0A 2K94A 2M8NA 1K30A 3GZLA 3DS5A 3EJEA 2KG6A 4PH0A 2VLPA 2QNWA 3DS2A 1UJZA 4U0BA 2M5RA 2GDYA 4PWVB 3RG2A 1EIAA 2EIAA 2K2QA 1IMQA 2PEMA 1M74A 4R0MA 4H2XC 2PEOA 1YIJP 1X3OA 1AF8A 4PXHB 3CC4P 2N98A 4DG9A 2MR8A 2KGDA 1VQ9P 2K5XA 2GDWA 1OR5A 1QVGO 2N5HA 5JPAA 2GZFA 3CC2P 2KORA 4GR2A 1M6NA 4COPA 1KQSO 2FVFA 2FAEA 1VKUA 4NEOA 1YJWP 3B5IA 2WPTA 2GDXA 5F2NA 5KP8B 1L0HA 5CZDB 4XRQA 3LRYA 2LF4A 4PH1A 1DNYA 2L9FA 2VSQA 1Q81Q 3CCSP 1KD1Q 1YHQP 3B4QA 1HY8A 3RG6C 2GYKA 2N50A 4F37A 2LIWA 3MGEA 5F2OA 1RNIA 2AFDA 2JGPA 2JU2A 7CEIA 3GJNA 1QVFO 3CD6P 3DTJA 1NJIQ 5BS2A 1VQ5P 3CC7P 3G1GA 2FVEA 2EHSA 1UNKA 2DNWA 5EJDA 2M8LA 2FQ2A 3CCJP 4U0EA 2X2BA 2GZGA 3G28A 2GZJA 1VQOP 2EG5A 5HGLA 1M6EX 3H4EA 2XT1A 2JYLA 1RO2A 2KW2A 4M0IA 1JJ2O 2LMLA 1KLPA 3G26A 2MF4A 1IUQA 1VQ4P 4GR6A 2VLNA 1YJ9P 3E2DA 1VQ8P 4QKOA 1IMPA 3DPHA 5HGOA 2K93A 2LOLA 2N5IA 2P9XA 1VQMP 2KGEA 3I55P 4U0CA 4CA3A 2KWLA 1EMVA 2AVAA 5KP6B 2LIUA 3CCQP 2MVUA 2PEQA 1GXHA 4WYMA 3U43A 5HV8A 4BPFA 2Z44A 1W2BO 3NTEA 2VLQA 2OARA 3CCMP 2KOQA
chains in the Genus database with same CATH topology
1UNKA 4F37A 3GKLC 2K0DX 2JB0A 2GZFA 1MZ8A 2GZEA 1E0HA 1ZNVA 2ERHA 1EMVA 2JAZA 4UHPB 7CEIA 3GJNA 1BXIA 2GZGA 2VLNA 2GZJA 1GXGA 1GXHA 1CEIA 1FR2A 2JBGA 3U43A 1AYIA 2VLPA 2NO8A 2VLOA 1UJZA 2GZIA 2VLQA 2K5XA 4QKOA 2WPTA 1IMPA 1IMQA 2GYKA 5EW5E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UNK A;  4F37 A;  3GKL C;  2K0D X;  2JB0 A;  2GZF A;  1MZ8 A;  2GZE A;  1E0H A;  1ZNV A;  2ERH A;  1EMV A;  2JAZ A;  4UHP B;  7CEI A;  3GJN A;  1BXI A;  2GZG A;  2VLN A;  2GZJ A;  1GXG A;  1GXH A;  1CEI A;  1FR2 A;  2JBG A;  3U43 A;  1AYI A;  2VLP A;  2NO8 A;  2VLO A;  1UJZ A;  2GZI A;  2VLQ A;  2K5X A;  4QKO A;  2WPT A;  1IMP A;  1IMQ A;  2GYK A;  5EW5 E; 
#chains in the Genus database with same CATH topology
 3GKL C;  3G6E P;  1MZ8 A;  1VQP P;  1ZNV A;  1M1K Q;  3G1I A;  3CCV P;  4QNB A;  2MD9 A;  1Q7Y Q;  1VQL P;  2CG5 B;  2L0Q A;  1T8K A;  2FVA A;  1AUM A;  1N8R Q;  2L6E A;  2FHS C;  2PEN A;  2JO0 A;  2MR7 A;  1NQ4 A;  5BS1 A;  1E6J P;  3CCE P;  1VQN P;  2GZE A;  1S72 P;  2ERH A;  2JAZ A;  3GZM A;  3HYB A;  3CCL P;  3CE7 A;  1VQ6 P;  3LMO A;  2L4B A;  1Z6M A;  2PEI A;  3G71 P;  2E1M A;  1GPJ A;  3NY7 B;  1FR2 A;  2JYG A;  3CCR P;  2NO8 A;  2FQ1 A;  3OW2 O;  2KG8 A;  2K0Y A;  3G29 A;  2DGY A;  1F80 D;  1ZMB A;  5I4T G;  1L0I A;  1E0H A;  1VQK P;  2PEJ A;  1ACP A;  2KG9 A;  1EOQ A;  2XZ1 C;  2JQ4 A;  2M8P A;  3G21 A;  2CQ8 A;  2KOS A;  1D1D A;  3Q20 A;  5EW5 E;  2JU1 A;  1QRJ A;  3I56 P;  2MVV A;  2ONT A;  2EFJ A;  4BPH A;  2PNG A;  3EJB A;  1YIT P;  5HGN A;  2N6Z A;  1VHN A;  5KP7 B;  1BXI A;  2AFE A;  1BAJ A;  2QA4 P;  2LL8 A;  1Q86 Q;  1AYI A;  1DV5 A;  2QEX P;  3CME P;  4U0F A;  2FAD A;  3G4S P;  2JB0 A;  3CXC O;  2XXM A;  4XFY A;  2L22 A;  2CGQ A;  3M1M A;  2CWO A;  1YI2 P;  3G0V A;  1GXG A;  2JBG A;  1A8O A;  4BPG A;  2K0X A;  2Z46 A;  2BHV A;  2KR5 A;  2EHT A;  2KGA A;  2N6Y A;  4MRT C;  2Z45 A;  4XFX A;  2BUO A;  2PEK A;  3DS4 A;  3EJD A;  2CNR A;  2ROQ A;  3DS1 A;  2LPK A;  2KOO A;  2K0D X;  4H2Y C;  4XRO A;  4XFZ A;  2LTE A;  2XZ0 D;  4IZ6 A;  3H0D A;  3CPW O;  5HVC A;  2OTJ P;  4H2W C;  1A43 A;  1Q82 Q;  3DS3 A;  1M90 Q;  2KOD A;  1CEI A;  1K9M Q;  2K92 A;  2VLO A;  4HKG A;  3WBH A;  3DS0 A;  3H47 A;  5F2K A;  2KGC A;  3CMA P;  3CCU P;  2MY5 A;  1K73 Q;  4UHP B;  1KC8 Q;  4U0A A;  4U0D A;  5HGM A;  2XV6 A;  4COC A;  1K8A Q;  1YJN P;  5DCK A;  2GZI A;  4IPY A;  2OTL P;  3P05 A;  2PY8 A;  1VQ7 P;  3HZQ A;  2FAC A;  1RO0 A;  2KOP A;  3VRL C;  2AF8 A;  2LKI A;  1HQB A;  2FQ0 A;  2K94 A;  2M8N A;  1K30 A;  3GZL A;  3DS5 A;  3EJE A;  2KG6 A;  4PH0 A;  2VLP A;  2QNW A;  3DS2 A;  1UJZ A;  4U0B A;  2M5R A;  2GDY A;  4PWV B;  3RG2 A;  1EIA A;  2EIA A;  2K2Q A;  1IMQ A;  2PEM A;  1M74 A;  4R0M A;  4H2X C;  2PEO A;  1YIJ P;  1X3O A;  1AF8 A;  4PXH B;  3CC4 P;  2N98 A;  4DG9 A;  2MR8 A;  2KGD A;  1VQ9 P;  2K5X A;  2GDW A;  1OR5 A;  1QVG O;  2N5H A;  5JPA A;  2GZF A;  3CC2 P;  2KOR A;  4GR2 A;  1M6N A;  4COP A;  1KQS O;  2FVF A;  2FAE A;  1VKU A;  4NEO A;  1YJW P;  3B5I A;  2WPT A;  2GDX A;  5F2N A;  5KP8 B;  1L0H A;  5CZD B;  4XRQ A;  3LRY A;  2LF4 A;  4PH1 A;  1DNY A;  2L9F A;  2VSQ A;  1Q81 Q;  3CCS P;  1KD1 Q;  1YHQ P;  3B4Q A;  1HY8 A;  3RG6 C;  2GYK A;  2N50 A;  4F37 A;  2LIW A;  3MGE A;  5F2O A;  1RNI A;  2AFD A;  2JGP A;  2JU2 A;  7CEI A;  3GJN A;  1QVF O;  3CD6 P;  3DTJ A;  1NJI Q;  5BS2 A;  1VQ5 P;  3CC7 P;  3G1G A;  2FVE A;  2EHS A;  1UNK A;  2DNW A;  5EJD A;  2M8L A;  2FQ2 A;  3CCJ P;  4U0E A;  2X2B A;  2GZG A;  3G28 A;  2GZJ A;  1VQO P;  2EG5 A;  5HGL A;  1M6E X;  3H4E A;  2XT1 A;  2JYL A;  1RO2 A;  2KW2 A;  4M0I A;  1JJ2 O;  2LML A;  1KLP A;  3G26 A;  2MF4 A;  1IUQ A;  1VQ4 P;  4GR6 A;  2VLN A;  1YJ9 P;  3E2D A;  1VQ8 P;  4QKO A;  1IMP A;  3DPH A;  5HGO A;  2K93 A;  2LOL A;  2N5I A;  2P9X A;  1VQM P;  2KGE A;  3I55 P;  4U0C A;  4CA3 A;  2KWL A;  1EMV A;  2AVA A;  5KP6 B;  2LIU A;  3CCQ P;  2MVU A;  2PEQ A;  1GXH A;  4WYM A;  3U43 A;  5HV8 A;  4BPF A;  2Z44 A;  1W2B O;  3NTE A;  2VLQ A;  2OAR A;  3CCM P;  2KOQ A; 
#chains in the Genus database with same CATH homology
 1UNK A;  4F37 A;  3GKL C;  2K0D X;  2JB0 A;  2GZF A;  1MZ8 A;  2GZE A;  1E0H A;  1ZNV A;  2ERH A;  1EMV A;  2JAZ A;  4UHP B;  7CEI A;  3GJN A;  1BXI A;  2GZG A;  2VLN A;  2GZJ A;  1GXG A;  1GXH A;  1CEI A;  1FR2 A;  2JBG A;  3U43 A;  1AYI A;  2VLP A;  2NO8 A;  2VLO A;  1UJZ A;  2GZI A;  2VLQ A;  2K5X A;  4QKO A;  2WPT A;  1IMP A;  1IMQ A;  2GYK A;  5EW5 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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