5EW5E

Crystal structure of colicin e9 in complex with its immunity protein im9
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
83
structure length
83
Chain Sequence
LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Colicin-E9
publication title Structural and biophysical analysis of nuclease protein antibiotics.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Hydrolase
total genus 25
structure length 83
sequence length 83
chains with identical sequence F, G, H
ec nomenclature
pdb deposition date 2015-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 5ew5E00
3GKLC 1BXIA 3GJNA 1UNKA 2GZFA 2VLQA 1E0HA 1GXGA 4QKOA 1EMVA 2GZJA 2JAZA 1IMQA 1UJZA 1ZNVA 4UHPB 4F37A 2VLNA 2GZIA 1CEIA 5EW5E 2K0DX 1MZ8A 2GZGA 2VLOA 2ERHA 2K5XA 7CEIA 1IMPA 2JBGA 2VLPA 3U43A 1AYIA 2GZEA 2JB0A 2WPTA 2NO8A 1GXHA 2GYKA 1FR2A
chains in the Genus database with same CATH superfamily
2KOOA 1ZMBA 2PEQA 2GZFA 1QVGO 3EJBA 1F80D 1QVFO 4XFYA 1S72P 3VRLC 2M8PA 2MY5A 5EW5E 2K0DX 1A43A 1MZ8A 2VLOA 1IUQA 5EJDA 3U43A 2KGDA 1RNIA 3CD6P 1DV5A 2JGPA 2PEOA 2K0YA 5HVCA 2EIAA 1YJWP 1E0HA 1NJIQ 2KOSA 3CCQP 2N6YA 2EHTA 2QEXP 3G26A 1W2BO 1VQ9P 2KORA 1T8KA 4PH1A 1VQ6P 1M6NA 5JPAA 3H47A 4F37A 3DS3A 1CEIA 2EFJA 2LL8A 7CEIA 4MRTC 1VQOP 4H2WC 3G4SP 2MVVA 2LIUA 1VQPP 2GYKA 2QA4P 1UNKA 2KGAA 3CMAP 4DG9A 3CCMP 1RO2A 2XXMA 3EJEA 2L4BA 1Q7YQ 2MD9A 3DS5A 1VQKP 3EJDA 2M5RA 4GR6A 1N8RQ 2KODA 3RG2A 1FR2A 1DNYA 4U0DA 2E1MA 2DNWA 2L22A 4XFXA 2GDYA 3CCJP 2AVAA 2N6ZA 5DCKA 2CWOA 1ZNVA 5HGLA 3LMOA 3CCLP 1KQSO 1AUMA 1L0IA 3HZQA 3NY7B 2FHSC 2PEMA 2JBGA 4H2XC 5F2OA 2FACA 2JB0A 3G6EP 1ACPA 3B5IA 2MVUA 2FVAA 3GJNA 3HYBA 2FVFA 3I56P 4BPGA 3CXCO 1YI2P 5HV8A 3G21A 4COCA 2VLNA 4COPA 1BAJA 2KOQA 3WBHA 3M1MA 2LKIA 4XFZA 1KD1Q 5HGMA 2N5IA 1YIJP 2Z45A 5KP6B 3DS2A 3CCUP 1QRJA 2KR5A 3CCEP 2Z46A 4IPYA 1EIAA 2FADA 2M8NA 1VQ7P 1M1KQ 2JU2A 1YHQP 2GDXA 2P9XA 3GZMA 2K0XA 2BHVA 2VLPA 2XZ1C 2K2QA 2KWLA 2KG9A 3G1IA 4WYMA 2CQ8A 1NQ4A 1HQBA 2OARA 2VLQA 1EMVA 2XT1A 4PXHB 1VQ8P 1X3OA 3OW2O 2K5XA 2QNWA 4QNBA 4PH0A 2N50A 4XROA 2GZEA 2PENA 2FQ0A 2NO8A 1GXHA 3CCSP 2LMLA 1OR5A 1M6EX 4M0IA 4BPFA 2CNRA 4U0FA 2LTEA 2MF4A 2VSQA 5BS1A 3LRYA 3MGEA 3CCRP 3DS1A 3GZLA 3GKLC 3G0VA 1L0HA 1VQMP 3G28A 2FVEA 2OTLP 3DS4A 1KC8Q 1UJZA 2Z44A 3RG6C 3DPHA 1K8AQ 2N5HA 2BUOA 2JQ4A 1M90Q 5CZDB 3CMEP 1HY8A 1K9MQ 4R0MA 1VQNP 1GPJA 2K93A 2GZJA 3CC4P 2FQ2A 5HGOA 2EHSA 1K30A 2JO0A 2MR7A 2N98A 2XZ0D 5HGNA 5F2KA 2LPKA 2AF8A 3CC2P 1KLPA 2LIWA 4CA3A 4UHPB 1VQ5P 2GZIA 5I4TG 2PEIA 1IMPA 2AFDA 3DS0A 2ONTA 1YITP 1BXIA 1K73Q 2LOLA 4H2YC 2EG5A 1YJNP 4XRQA 2JYLA 2PEJA 1YJ9P 5F2NA 2L6EA 2ROQA 3Q20A 4IZ6A 1AF8A 2PNGA 2OTJP 4U0CA 2GZGA 3CPWO 2WPTA 3CE7A 3I55P 3DTJA 2FQ1A 3H0DA 1Z6MA 2JYGA 2KW2A 1E6JP 2L9FA 2MR8A 2X2BA 2JAZA 2CGQA 4NEOA 1VQLP 4GR2A 1VHNA 1D1DA 3G29A 1JJ2O 3NTEA 1EOQA 1VQ4P 1Q86Q 2DGYA 2KG6A 1VKUA 4QKOA 4BPHA 2AFEA 3G1GA 4PWVB 2PEKA 2CG5B 1Q82Q 3P05A 2KG8A 2LF4A 2JU1A 4U0AA 2PY8A 5KP8B 5BS2A 2FAEA 2KOPA 1RO0A 5KP7B 2KGCA 1Q81Q 1A8OA 1GXGA 3G71P 3E2DA 4HKGA 4U0BA 1IMQA 3CC7P 2K94A 3B4QA 1M74A 2K92A 2GDWA 3H4EA 2ERHA 4U0EA 2M8LA 2L0QA 1AYIA 3CCVP 2XV6A 2KGEA
chains in the Genus database with same CATH topology
3GKLC 1BXIA 3GJNA 1UNKA 2GZFA 2VLQA 1E0HA 1GXGA 4QKOA 1EMVA 2GZJA 2JAZA 1IMQA 1UJZA 1ZNVA 4UHPB 4F37A 2VLNA 2GZIA 1CEIA 5EW5E 2K0DX 1MZ8A 2GZGA 2VLOA 2ERHA 2K5XA 7CEIA 1IMPA 2JBGA 2VLPA 3U43A 1AYIA 2GZEA 2JB0A 2WPTA 2NO8A 1GXHA 2GYKA 1FR2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GKL C;  1BXI A;  3GJN A;  1UNK A;  2GZF A;  2VLQ A;  1E0H A;  1GXG A;  4QKO A;  1EMV A;  2GZJ A;  2JAZ A;  1IMQ A;  1UJZ A;  1ZNV A;  4UHP B;  4F37 A;  2VLN A;  2GZI A;  1CEI A;  5EW5 E;  2K0D X;  1MZ8 A;  2GZG A;  2VLO A;  2ERH A;  2K5X A;  7CEI A;  1IMP A;  2JBG A;  2VLP A;  3U43 A;  1AYI A;  2GZE A;  2JB0 A;  2WPT A;  2NO8 A;  1GXH A;  2GYK A;  1FR2 A; 
#chains in the Genus database with same CATH topology
 2KOO A;  1ZMB A;  2PEQ A;  2GZF A;  1QVG O;  3EJB A;  1F80 D;  1QVF O;  4XFY A;  1S72 P;  3VRL C;  2M8P A;  2MY5 A;  5EW5 E;  2K0D X;  1A43 A;  1MZ8 A;  2VLO A;  1IUQ A;  5EJD A;  3U43 A;  2KGD A;  1RNI A;  3CD6 P;  1DV5 A;  2JGP A;  2PEO A;  2K0Y A;  5HVC A;  2EIA A;  1YJW P;  1E0H A;  1NJI Q;  2KOS A;  3CCQ P;  2N6Y A;  2EHT A;  2QEX P;  3G26 A;  1W2B O;  1VQ9 P;  2KOR A;  1T8K A;  4PH1 A;  1VQ6 P;  1M6N A;  5JPA A;  3H47 A;  4F37 A;  3DS3 A;  1CEI A;  2EFJ A;  2LL8 A;  7CEI A;  4MRT C;  1VQO P;  4H2W C;  3G4S P;  2MVV A;  2LIU A;  1VQP P;  2GYK A;  2QA4 P;  1UNK A;  2KGA A;  3CMA P;  4DG9 A;  3CCM P;  1RO2 A;  2XXM A;  3EJE A;  2L4B A;  1Q7Y Q;  2MD9 A;  3DS5 A;  1VQK P;  3EJD A;  2M5R A;  4GR6 A;  1N8R Q;  2KOD A;  3RG2 A;  1FR2 A;  1DNY A;  4U0D A;  2E1M A;  2DNW A;  2L22 A;  4XFX A;  2GDY A;  3CCJ P;  2AVA A;  2N6Z A;  5DCK A;  2CWO A;  1ZNV A;  5HGL A;  3LMO A;  3CCL P;  1KQS O;  1AUM A;  1L0I A;  3HZQ A;  3NY7 B;  2FHS C;  2PEM A;  2JBG A;  4H2X C;  5F2O A;  2FAC A;  2JB0 A;  3G6E P;  1ACP A;  3B5I A;  2MVU A;  2FVA A;  3GJN A;  3HYB A;  2FVF A;  3I56 P;  4BPG A;  3CXC O;  1YI2 P;  5HV8 A;  3G21 A;  4COC A;  2VLN A;  4COP A;  1BAJ A;  2KOQ A;  3WBH A;  3M1M A;  2LKI A;  4XFZ A;  1KD1 Q;  5HGM A;  2N5I A;  1YIJ P;  2Z45 A;  5KP6 B;  3DS2 A;  3CCU P;  1QRJ A;  2KR5 A;  3CCE P;  2Z46 A;  4IPY A;  1EIA A;  2FAD A;  2M8N A;  1VQ7 P;  1M1K Q;  2JU2 A;  1YHQ P;  2GDX A;  2P9X A;  3GZM A;  2K0X A;  2BHV A;  2VLP A;  2XZ1 C;  2K2Q A;  2KWL A;  2KG9 A;  3G1I A;  4WYM A;  2CQ8 A;  1NQ4 A;  1HQB A;  2OAR A;  2VLQ A;  1EMV A;  2XT1 A;  4PXH B;  1VQ8 P;  1X3O A;  3OW2 O;  2K5X A;  2QNW A;  4QNB A;  4PH0 A;  2N50 A;  4XRO A;  2GZE A;  2PEN A;  2FQ0 A;  2NO8 A;  1GXH A;  3CCS P;  2LML A;  1OR5 A;  1M6E X;  4M0I A;  4BPF A;  2CNR A;  4U0F A;  2LTE A;  2MF4 A;  2VSQ A;  5BS1 A;  3LRY A;  3MGE A;  3CCR P;  3DS1 A;  3GZL A;  3GKL C;  3G0V A;  1L0H A;  1VQM P;  3G28 A;  2FVE A;  2OTL P;  3DS4 A;  1KC8 Q;  1UJZ A;  2Z44 A;  3RG6 C;  3DPH A;  1K8A Q;  2N5H A;  2BUO A;  2JQ4 A;  1M90 Q;  5CZD B;  3CME P;  1HY8 A;  1K9M Q;  4R0M A;  1VQN P;  1GPJ A;  2K93 A;  2GZJ A;  3CC4 P;  2FQ2 A;  5HGO A;  2EHS A;  1K30 A;  2JO0 A;  2MR7 A;  2N98 A;  2XZ0 D;  5HGN A;  5F2K A;  2LPK A;  2AF8 A;  3CC2 P;  1KLP A;  2LIW A;  4CA3 A;  4UHP B;  1VQ5 P;  2GZI A;  5I4T G;  2PEI A;  1IMP A;  2AFD A;  3DS0 A;  2ONT A;  1YIT P;  1BXI A;  1K73 Q;  2LOL A;  4H2Y C;  2EG5 A;  1YJN P;  4XRQ A;  2JYL A;  2PEJ A;  1YJ9 P;  5F2N A;  2L6E A;  2ROQ A;  3Q20 A;  4IZ6 A;  1AF8 A;  2PNG A;  2OTJ P;  4U0C A;  2GZG A;  3CPW O;  2WPT A;  3CE7 A;  3I55 P;  3DTJ A;  2FQ1 A;  3H0D A;  1Z6M A;  2JYG A;  2KW2 A;  1E6J P;  2L9F A;  2MR8 A;  2X2B A;  2JAZ A;  2CGQ A;  4NEO A;  1VQL P;  4GR2 A;  1VHN A;  1D1D A;  3G29 A;  1JJ2 O;  3NTE A;  1EOQ A;  1VQ4 P;  1Q86 Q;  2DGY A;  2KG6 A;  1VKU A;  4QKO A;  4BPH A;  2AFE A;  3G1G A;  4PWV B;  2PEK A;  2CG5 B;  1Q82 Q;  3P05 A;  2KG8 A;  2LF4 A;  2JU1 A;  4U0A A;  2PY8 A;  5KP8 B;  5BS2 A;  2FAE A;  2KOP A;  1RO0 A;  5KP7 B;  2KGC A;  1Q81 Q;  1A8O A;  1GXG A;  3G71 P;  3E2D A;  4HKG A;  4U0B A;  1IMQ A;  3CC7 P;  2K94 A;  3B4Q A;  1M74 A;  2K92 A;  2GDW A;  3H4E A;  2ERH A;  4U0E A;  2M8L A;  2L0Q A;  1AYI A;  3CCV P;  2XV6 A;  2KGE A; 
#chains in the Genus database with same CATH homology
 3GKL C;  1BXI A;  3GJN A;  1UNK A;  2GZF A;  2VLQ A;  1E0H A;  1GXG A;  4QKO A;  1EMV A;  2GZJ A;  2JAZ A;  1IMQ A;  1UJZ A;  1ZNV A;  4UHP B;  4F37 A;  2VLN A;  2GZI A;  1CEI A;  5EW5 E;  2K0D X;  1MZ8 A;  2GZG A;  2VLO A;  2ERH A;  2K5X A;  7CEI A;  1IMP A;  2JBG A;  2VLP A;  3U43 A;  1AYI A;  2GZE A;  2JB0 A;  2WPT A;  2NO8 A;  1GXH A;  2GYK A;  1FR2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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