5EW5E

Crystal structure of colicin e9 in complex with its immunity protein im9
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
83
structure length
83
Chain Sequence
LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Colicin-E9
publication title Structural and biophysical analysis of nuclease protein antibiotics.
pubmed doi rcsb
source organism Escherichia coli
total genus 25
structure length 83
sequence length 83
chains with identical sequence F, G, H
ec nomenclature
pdb deposition date 2015-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 5ew5E00
1IMPA 2GZFA 3GJNA 2K0DX 7CEIA 1MZ8A 2NO8A 2GZIA 2GZJA 2GYKA 3GKLC 2WPTA 2JBGA 1EMVA 4UHPB 1ZNVA 1UNKA 1BXIA 1FR2A 3U43A 2JB0A 1E0HA 2VLQA 2JAZA 1AYIA 2VLPA 1GXHA 1IMQA 1UJZA 1GXGA 2K5XA 5EW5E 2VLOA 4F37A 2ERHA 1CEIA 2VLNA 2GZGA 2GZEA 4QKOA
chains in the Genus database with same CATH superfamily
2X2BA 2AVAA 1VQ9P 2VSQA 3DS3A 3MGEA 2FACA 4DG9A 3NY7B 2BHVA 2L4BA 2KGEA 2VLQA 4BPFA 1E0HA 3GZMA 3H0DA 4R0MA 2GZIA 5KP6B 1L0IA 3DPHA 2GZFA 3CCMP 3VRLC 4PWVB 3G0VA 2NO8A 2MD9A 2EIAA 2Z45A 2GZJA 3CCLP 1YJ9P 2JBGA 1EMVA 2EHTA 1M6NA 2KOQA 2MR8A 1HY8A 2OARA 2BUOA 3EJDA 2L0QA 2N5HA 3I55P 2PEIA 3B4QA 4U0DA 2GZGA 4GR2A 4UHPB 5HGMA 1M6EX 1K30A 1VQ5P 3EJBA 4XFZA 5CZDB 1DNYA 5EJDA 1YJNP 1JJ2O 2EHSA 4XFYA 3U43A 2JU1A 2MY5A 2FQ2A 4U0AA 4H2XC 2K0YA 1VKUA 5EW5E 2VLOA 3HYBA 3G21A 2M8PA 1YJWP 2K0DX 1RNIA 3GZLA 2JYGA 2AFDA 2N6YA 3CCVP 4GR6A 1IUQA 2M8LA 1RO0A 2E1MA 1EIAA 2JU2A 2Z46A 5HV8A 1GXGA 4F37A 2PY8A 3CMAP 5KP7B 2FVEA 2FVFA 1VQPP 2ROQA 2PEJA 2XZ1C 1DV5A 2GYKA 2KOOA 3NTEA 2N98A 2P9XA 2K93A 1YI2P 1ZNVA 5HVCA 5F2OA 2VLPA 2DNWA 4HKGA 2LPKA 3I56P 3LRYA 5I4TG 1YHQP 3CD6P 3EJEA 2PEMA 3B5IA 3CCUP 2LMLA 3GKLC 2WPTA 2MVUA 2CWOA 1L0HA 1IMQA 4XRQA 3CPWO 2AFEA 1D1DA 3G4SP 1CEIA 5KP8B 4MRTC 1A8OA 2XZ0D 1W2BO 1KD1Q 4NEOA 2K94A 3CCSP 2MR7A 3CMEP 3CC2P 1K9MQ 3M1MA 3G1IA 1VHNA 1N8RQ 2LIWA 1F80D 1KQSO 2VLNA 2GZEA 3Q20A 3GJNA 1ACPA 2KGCA 2QNWA 1VQLP 2LOLA 4U0FA 1VQNP 2N5IA 2M5RA 2N50A 2KOPA 2PEOA 4U0CA 2JQ4A 3CE7A 3G28A 1GXHA 1EOQA 2ONTA 2GDXA 3DS5A 1IMPA 2KOSA 1GPJA 5F2NA 1QVFO 3CCQP 2KGDA 3DS4A 1Q81Q 1RO2A 4PH0A 2Z44A 1HQBA 5HGNA 4XROA 2AF8A 2JO0A 2KGAA 2N6ZA 2KG8A 1E6JP 1Q82Q 2QA4P 1UJZA 2K0XA 2MF4A 3DS1A 2CGQA 4IPYA 2EG5A 1VQMP 2GDWA 7CEIA 5BS2A 3CC7P 4BPGA 2LTEA 2JB0A 3G71P 3G29A 3HZQA 4WYMA 1X3OA 4CA3A 1VQOP 1Q7YQ 1VQ6P 2DGYA 2PEKA 2CG5B 1Q86Q 3CCJP 1A43A 2KG9A 2QEXP 3WBHA 2L6EA 1YITP 2MVVA 1FR2A 2M8NA 1AUMA 2LIUA 1KC8Q 2KR5A 5F2KA 2K5XA 1K8AQ 1T8KA 2K92A 1K73Q 5DCKA 2FHSC 1VQ7P 1NQ4A 3RG6C 3DS0A 3DS2A 1BAJA 2FQ1A 4XFXA 2JGPA 2GDYA 4PH1A 3LMOA 1OR5A 1KLPA 1M74A 3DTJA 4U0EA 1M1KQ 4QKOA 2FVAA 4U0BA 2FAEA 5JPAA 1MZ8A 2KORA 3G6EP 2PEQA 3CXCO 1S72P 2XV6A 2CNRA 2KW2A 1UNKA 3CC4P 3RG2A 1NJIQ 4IZ6A 3OW2O 3CCEP 2L22A 3E2DA 4H2YC 1AF8A 2K2QA 2LF4A 1AYIA 3H47A 3P05A 2KODA 2OTJP 4BPHA 2LKIA 1YIJP 2FADA 2PENA 2FQ0A 1VQ4P 3CCRP 2CQ8A 4QNBA 2JAZA 1Z6MA 1ZMBA 1VQKP 2EFJA 4PXHB 2PNGA 4COCA 2XT1A 3H4EA 5HGOA 2OTLP 3G1GA 4COPA 1VQ8P 2L9FA 2XXMA 2LL8A 1BXIA 2KWLA 1QVGO 5HGLA 1QRJA 3G26A 4H2WC 5BS1A 2JYLA 2KG6A 2ERHA 1M90Q 4M0IA
chains in the Genus database with same CATH topology
1IMPA 2GZFA 3GJNA 2K0DX 7CEIA 1MZ8A 2NO8A 2GZIA 2GZJA 2GYKA 3GKLC 2WPTA 2JBGA 1EMVA 4UHPB 1ZNVA 1UNKA 1BXIA 1FR2A 3U43A 2JB0A 1E0HA 2VLQA 2JAZA 1AYIA 2VLPA 1GXHA 1IMQA 1UJZA 1GXGA 2K5XA 5EW5E 2VLOA 4F37A 2ERHA 1CEIA 2VLNA 2GZGA 2GZEA 4QKOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IMP A;  2GZF A;  3GJN A;  2K0D X;  7CEI A;  1MZ8 A;  2NO8 A;  2GZI A;  2GZJ A;  2GYK A;  3GKL C;  2WPT A;  2JBG A;  1EMV A;  4UHP B;  1ZNV A;  1UNK A;  1BXI A;  1FR2 A;  3U43 A;  2JB0 A;  1E0H A;  2VLQ A;  2JAZ A;  1AYI A;  2VLP A;  1GXH A;  1IMQ A;  1UJZ A;  1GXG A;  2K5X A;  5EW5 E;  2VLO A;  4F37 A;  2ERH A;  1CEI A;  2VLN A;  2GZG A;  2GZE A;  4QKO A; 
#chains in the Genus database with same CATH topology
 2X2B A;  2AVA A;  1VQ9 P;  2VSQ A;  3DS3 A;  3MGE A;  2FAC A;  4DG9 A;  3NY7 B;  2BHV A;  2L4B A;  2KGE A;  2VLQ A;  4BPF A;  1E0H A;  3GZM A;  3H0D A;  4R0M A;  2GZI A;  5KP6 B;  1L0I A;  3DPH A;  2GZF A;  3CCM P;  3VRL C;  4PWV B;  3G0V A;  2NO8 A;  2MD9 A;  2EIA A;  2Z45 A;  2GZJ A;  3CCL P;  1YJ9 P;  2JBG A;  1EMV A;  2EHT A;  1M6N A;  2KOQ A;  2MR8 A;  1HY8 A;  2OAR A;  2BUO A;  3EJD A;  2L0Q A;  2N5H A;  3I55 P;  2PEI A;  3B4Q A;  4U0D A;  2GZG A;  4GR2 A;  4UHP B;  5HGM A;  1M6E X;  1K30 A;  1VQ5 P;  3EJB A;  4XFZ A;  5CZD B;  1DNY A;  5EJD A;  1YJN P;  1JJ2 O;  2EHS A;  4XFY A;  3U43 A;  2JU1 A;  2MY5 A;  2FQ2 A;  4U0A A;  4H2X C;  2K0Y A;  1VKU A;  5EW5 E;  2VLO A;  3HYB A;  3G21 A;  2M8P A;  1YJW P;  2K0D X;  1RNI A;  3GZL A;  2JYG A;  2AFD A;  2N6Y A;  3CCV P;  4GR6 A;  1IUQ A;  2M8L A;  1RO0 A;  2E1M A;  1EIA A;  2JU2 A;  2Z46 A;  5HV8 A;  1GXG A;  4F37 A;  2PY8 A;  3CMA P;  5KP7 B;  2FVE A;  2FVF A;  1VQP P;  2ROQ A;  2PEJ A;  2XZ1 C;  1DV5 A;  2GYK A;  2KOO A;  3NTE A;  2N98 A;  2P9X A;  2K93 A;  1YI2 P;  1ZNV A;  5HVC A;  5F2O A;  2VLP A;  2DNW A;  4HKG A;  2LPK A;  3I56 P;  3LRY A;  5I4T G;  1YHQ P;  3CD6 P;  3EJE A;  2PEM A;  3B5I A;  3CCU P;  2LML A;  3GKL C;  2WPT A;  2MVU A;  2CWO A;  1L0H A;  1IMQ A;  4XRQ A;  3CPW O;  2AFE A;  1D1D A;  3G4S P;  1CEI A;  5KP8 B;  4MRT C;  1A8O A;  2XZ0 D;  1W2B O;  1KD1 Q;  4NEO A;  2K94 A;  3CCS P;  2MR7 A;  3CME P;  3CC2 P;  1K9M Q;  3M1M A;  3G1I A;  1VHN A;  1N8R Q;  2LIW A;  1F80 D;  1KQS O;  2VLN A;  2GZE A;  3Q20 A;  3GJN A;  1ACP A;  2KGC A;  2QNW A;  1VQL P;  2LOL A;  4U0F A;  1VQN P;  2N5I A;  2M5R A;  2N50 A;  2KOP A;  2PEO A;  4U0C A;  2JQ4 A;  3CE7 A;  3G28 A;  1GXH A;  1EOQ A;  2ONT A;  2GDX A;  3DS5 A;  1IMP A;  2KOS A;  1GPJ A;  5F2N A;  1QVF O;  3CCQ P;  2KGD A;  3DS4 A;  1Q81 Q;  1RO2 A;  4PH0 A;  2Z44 A;  1HQB A;  5HGN A;  4XRO A;  2AF8 A;  2JO0 A;  2KGA A;  2N6Z A;  2KG8 A;  1E6J P;  1Q82 Q;  2QA4 P;  1UJZ A;  2K0X A;  2MF4 A;  3DS1 A;  2CGQ A;  4IPY A;  2EG5 A;  1VQM P;  2GDW A;  7CEI A;  5BS2 A;  3CC7 P;  4BPG A;  2LTE A;  2JB0 A;  3G71 P;  3G29 A;  3HZQ A;  4WYM A;  1X3O A;  4CA3 A;  1VQO P;  1Q7Y Q;  1VQ6 P;  2DGY A;  2PEK A;  2CG5 B;  1Q86 Q;  3CCJ P;  1A43 A;  2KG9 A;  2QEX P;  3WBH A;  2L6E A;  1YIT P;  2MVV A;  1FR2 A;  2M8N A;  1AUM A;  2LIU A;  1KC8 Q;  2KR5 A;  5F2K A;  2K5X A;  1K8A Q;  1T8K A;  2K92 A;  1K73 Q;  5DCK A;  2FHS C;  1VQ7 P;  1NQ4 A;  3RG6 C;  3DS0 A;  3DS2 A;  1BAJ A;  2FQ1 A;  4XFX A;  2JGP A;  2GDY A;  4PH1 A;  3LMO A;  1OR5 A;  1KLP A;  1M74 A;  3DTJ A;  4U0E A;  1M1K Q;  4QKO A;  2FVA A;  4U0B A;  2FAE A;  5JPA A;  1MZ8 A;  2KOR A;  3G6E P;  2PEQ A;  3CXC O;  1S72 P;  2XV6 A;  2CNR A;  2KW2 A;  1UNK A;  3CC4 P;  3RG2 A;  1NJI Q;  4IZ6 A;  3OW2 O;  3CCE P;  2L22 A;  3E2D A;  4H2Y C;  1AF8 A;  2K2Q A;  2LF4 A;  1AYI A;  3H47 A;  3P05 A;  2KOD A;  2OTJ P;  4BPH A;  2LKI A;  1YIJ P;  2FAD A;  2PEN A;  2FQ0 A;  1VQ4 P;  3CCR P;  2CQ8 A;  4QNB A;  2JAZ A;  1Z6M A;  1ZMB A;  1VQK P;  2EFJ A;  4PXH B;  2PNG A;  4COC A;  2XT1 A;  3H4E A;  5HGO A;  2OTL P;  3G1G A;  4COP A;  1VQ8 P;  2L9F A;  2XXM A;  2LL8 A;  1BXI A;  2KWL A;  1QVG O;  5HGL A;  1QRJ A;  3G26 A;  4H2W C;  5BS1 A;  2JYL A;  2KG6 A;  2ERH A;  1M90 Q;  4M0I A; 
#chains in the Genus database with same CATH homology
 1IMP A;  2GZF A;  3GJN A;  2K0D X;  7CEI A;  1MZ8 A;  2NO8 A;  2GZI A;  2GZJ A;  2GYK A;  3GKL C;  2WPT A;  2JBG A;  1EMV A;  4UHP B;  1ZNV A;  1UNK A;  1BXI A;  1FR2 A;  3U43 A;  2JB0 A;  1E0H A;  2VLQ A;  2JAZ A;  1AYI A;  2VLP A;  1GXH A;  1IMQ A;  1UJZ A;  1GXG A;  2K5X A;  5EW5 E;  2VLO A;  4F37 A;  2ERH A;  1CEI A;  2VLN A;  2GZG A;  2GZE A;  4QKO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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