5EW5E

Crystal structure of colicin e9 in complex with its immunity protein im9
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
83
structure length
83
Chain Sequence
LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and biophysical analysis of nuclease protein antibiotics.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Hydrolase
molecule keywords Colicin-E9
total genus 25
structure length 83
sequence length 83
chains with identical sequence F, G, H
ec nomenclature
pdb deposition date 2015-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 5ew5E00
1AYIA 4QKOA 2GZJA 1IMQA 2GZIA 2ERHA 1MZ8A 7CEIA 2GZGA 1BXIA 2JB0A 2JBGA 1UNKA 2JAZA 2GYKA 1IMPA 2VLQA 1GXHA 1FR2A 1UJZA 1ZNVA 2VLOA 2NO8A 1EMVA 3GJNA 2K5XA 1GXGA 2WPTA 5EW5E 2VLNA 4F37A 2GZEA 1E0HA 3GKLC 1CEIA 2K0DX 3U43A 2GZFA 4UHPB 2VLPA
chains in the Genus database with same CATH superfamily
3I55P 2LOLA 1F80D 1X3OA 3G6EP 1NJIQ 3CC2P 2AFEA 2PEKA 1K30A 2M8PA 5KP6B 3CPWO 4BPFA 3CCVP 5BS1A 1E0HA 1VQNP 4M0IA 3NY7B 2XT1A 1VKUA 2PEOA 1YJ9P 2AF8A 3I56P 2MF4A 1E6JP 2JYGA 2LIWA 2QEXP 2VLOA 1NQ4A 3G21A 1EMVA 2FADA 3Q20A 2JU1A 2P9XA 1W2BO 3CMAP 2XZ0D 1A8OA 1CEIA 1YHQP 1VHNA 3G26A 2FACA 3EJBA 4H2XC 4R0MA 1M6EX 1BAJA 2KGEA 4HKGA 2JGPA 2DGYA 5HGLA 2FVFA 1YI2P 2BHVA 1ZNVA 2PEIA 2LTEA 2L9FA 3RG6C 3LMOA 2FQ0A 2XZ1C 5JPAA 1KQSO 4QKOA 2OTLP 1VQ7P 1OR5A 4PH1A 3WBHA 5BS2A 4PWVB 2K2QA 1GXHA 3CXCO 2EHSA 2FVAA 5KP8B 3CMEP 4COCA 3G29A 2CGQA 2KWLA 1IUQA 1MZ8A 2BUOA 3CCQP 1VQMP 3H0DA 2K0XA 3H47A 2KODA 2K92A 3GZMA 4F37A 3CCMP 3DPHA 3B4QA 1M6NA 4GR6A 1GPJA 2CG5B 2JBGA 2XXMA 2DNWA 2GYKA 4IPYA 5EJDA 1UJZA 1K9MQ 2JO0A 1KC8Q 2VLNA 2EG5A 2KGCA 2Z44A 2PEMA 2L4BA 2GDYA 2MY5A 4PXHB 1K73Q 1VQ6P 1D1DA 2GZGA 1VQKP 3MGEA 2LIUA 4QNBA 4U0BA 3CCSP 2KGDA 4XROA 1GXGA 2GZEA 2PENA 1DV5A 1ACPA 2K0DX 3CE7A 1L0HA 2QA4P 2M5RA 1EIAA 2CWOA 1N8RQ 2M8NA 4U0CA 4U0AA 1VQ8P 2PEQA 5HGOA 1RNIA 3G4SP 1M74A 1FR2A 2E1MA 2KOOA 2QNWA 2L22A 3G28A 3CD6P 1S72P 2K5XA 1AF8A 3CCUP 2KGAA 1M1KQ 5HV8A 2LF4A 2GDXA 3VRLC 2JQ4A 2N6YA 3E2DA 2Z46A 7CEIA 2JB0A 1UNKA 1IMPA 4XRQA 2N5IA 4XFYA 1YITP 1VQ9P 3NTEA 2EFJA 2MR8A 5EW5E 1Z6MA 3GKLC 3DTJA 1YJNP 3OW2O 2FQ2A 4H2YC 2VSQA 3DS4A 2LMLA 4MRTC 5I4TG 2JU2A 2KOPA 2AVAA 2LKIA 3G1GA 3M1MA 1KD1Q 2KG9A 4COPA 5F2OA 2JYLA 2X2BA 2GZJA 2PEJA 2FVEA 2N50A 3CCJP 3EJDA 3H4EA 4U0DA 3DS5A 4WYMA 1K8AQ 1T8KA 2VLQA 4PH0A 2EHTA 4DG9A 2NO8A 2EIAA 3B5IA 4U0EA 2N5HA 1ZMBA 1VQPP 1KLPA 3EJEA 3G1IA 2GZFA 1AUMA 2VLPA 1VQOP 2KOSA 1Q86Q 3GZLA 2KR5A 1EOQA 2PY8A 1YIJP 2GDWA 2KORA 5F2KA 3CCLP 1RO0A 4CA3A 4H2WC 2MR7A 3G71P 4XFZA 1JJ2O 1M90Q 1HY8A 2ERHA 2M8LA 2K93A 4U0FA 3P05A 2PNGA 5KP7B 4NEOA 3GJNA 2ONTA 5F2NA 2AFDA 2Z45A 2KW2A 3HYBA 5CZDB 2FQ1A 3DS1A 3DS0A 1BXIA 4GR2A 3RG2A 3G0VA 1VQ4P 2K0YA 1YJWP 1Q81Q 1VQLP 1A43A 4IZ6A 2KG8A 3CCEP 1Q82Q 2LL8A 3CC4P 1QVFO 2GZIA 2CNRA 2L0QA 1QVGO 2FAEA 2LPKA 1Q7YQ 1DNYA 1VQ5P 4BPGA 2MD9A 2MVVA 5HGMA 2OTJP 1HQBA 2N6ZA 2CQ8A 4UHPB 1AYIA 2XV6A 3HZQA 3CCRP 2OARA 1IMQA 2FHSC 2ROQA 3LRYA 2KOQA 1RO2A 1QRJA 3DS2A 3DS3A 2JAZA 4BPHA 4XFXA 2L6EA 2N98A 3CC7P 5HGNA 2MVUA 2WPTA 5DCKA 2K94A 1L0IA 2KG6A 3U43A 5HVCA
chains in the Genus database with same CATH topology
1AYIA 4QKOA 2GZJA 1IMQA 2GZIA 2ERHA 1MZ8A 7CEIA 2GZGA 1BXIA 2JB0A 2JBGA 1UNKA 2JAZA 2GYKA 1IMPA 2VLQA 1GXHA 1FR2A 1UJZA 1ZNVA 2VLOA 2NO8A 1EMVA 3GJNA 2K5XA 1GXGA 2WPTA 5EW5E 2VLNA 4F37A 2GZEA 1E0HA 3GKLC 1CEIA 2K0DX 3U43A 2GZFA 4UHPB 2VLPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AYI A;  4QKO A;  2GZJ A;  1IMQ A;  2GZI A;  2ERH A;  1MZ8 A;  7CEI A;  2GZG A;  1BXI A;  2JB0 A;  2JBG A;  1UNK A;  2JAZ A;  2GYK A;  1IMP A;  2VLQ A;  1GXH A;  1FR2 A;  1UJZ A;  1ZNV A;  2VLO A;  2NO8 A;  1EMV A;  3GJN A;  2K5X A;  1GXG A;  2WPT A;  5EW5 E;  2VLN A;  4F37 A;  2GZE A;  1E0H A;  3GKL C;  1CEI A;  2K0D X;  3U43 A;  2GZF A;  4UHP B;  2VLP A; 
#chains in the Genus database with same CATH topology
 3I55 P;  2LOL A;  1F80 D;  1X3O A;  3G6E P;  1NJI Q;  3CC2 P;  2AFE A;  2PEK A;  1K30 A;  2M8P A;  5KP6 B;  3CPW O;  4BPF A;  3CCV P;  5BS1 A;  1E0H A;  1VQN P;  4M0I A;  3NY7 B;  2XT1 A;  1VKU A;  2PEO A;  1YJ9 P;  2AF8 A;  3I56 P;  2MF4 A;  1E6J P;  2JYG A;  2LIW A;  2QEX P;  2VLO A;  1NQ4 A;  3G21 A;  1EMV A;  2FAD A;  3Q20 A;  2JU1 A;  2P9X A;  1W2B O;  3CMA P;  2XZ0 D;  1A8O A;  1CEI A;  1YHQ P;  1VHN A;  3G26 A;  2FAC A;  3EJB A;  4H2X C;  4R0M A;  1M6E X;  1BAJ A;  2KGE A;  4HKG A;  2JGP A;  2DGY A;  5HGL A;  2FVF A;  1YI2 P;  2BHV A;  1ZNV A;  2PEI A;  2LTE A;  2L9F A;  3RG6 C;  3LMO A;  2FQ0 A;  2XZ1 C;  5JPA A;  1KQS O;  4QKO A;  2OTL P;  1VQ7 P;  1OR5 A;  4PH1 A;  3WBH A;  5BS2 A;  4PWV B;  2K2Q A;  1GXH A;  3CXC O;  2EHS A;  2FVA A;  5KP8 B;  3CME P;  4COC A;  3G29 A;  2CGQ A;  2KWL A;  1IUQ A;  1MZ8 A;  2BUO A;  3CCQ P;  1VQM P;  3H0D A;  2K0X A;  3H47 A;  2KOD A;  2K92 A;  3GZM A;  4F37 A;  3CCM P;  3DPH A;  3B4Q A;  1M6N A;  4GR6 A;  1GPJ A;  2CG5 B;  2JBG A;  2XXM A;  2DNW A;  2GYK A;  4IPY A;  5EJD A;  1UJZ A;  1K9M Q;  2JO0 A;  1KC8 Q;  2VLN A;  2EG5 A;  2KGC A;  2Z44 A;  2PEM A;  2L4B A;  2GDY A;  2MY5 A;  4PXH B;  1K73 Q;  1VQ6 P;  1D1D A;  2GZG A;  1VQK P;  3MGE A;  2LIU A;  4QNB A;  4U0B A;  3CCS P;  2KGD A;  4XRO A;  1GXG A;  2GZE A;  2PEN A;  1DV5 A;  1ACP A;  2K0D X;  3CE7 A;  1L0H A;  2QA4 P;  2M5R A;  1EIA A;  2CWO A;  1N8R Q;  2M8N A;  4U0C A;  4U0A A;  1VQ8 P;  2PEQ A;  5HGO A;  1RNI A;  3G4S P;  1M74 A;  1FR2 A;  2E1M A;  2KOO A;  2QNW A;  2L22 A;  3G28 A;  3CD6 P;  1S72 P;  2K5X A;  1AF8 A;  3CCU P;  2KGA A;  1M1K Q;  5HV8 A;  2LF4 A;  2GDX A;  3VRL C;  2JQ4 A;  2N6Y A;  3E2D A;  2Z46 A;  7CEI A;  2JB0 A;  1UNK A;  1IMP A;  4XRQ A;  2N5I A;  4XFY A;  1YIT P;  1VQ9 P;  3NTE A;  2EFJ A;  2MR8 A;  5EW5 E;  1Z6M A;  3GKL C;  3DTJ A;  1YJN P;  3OW2 O;  2FQ2 A;  4H2Y C;  2VSQ A;  3DS4 A;  2LML A;  4MRT C;  5I4T G;  2JU2 A;  2KOP A;  2AVA A;  2LKI A;  3G1G A;  3M1M A;  1KD1 Q;  2KG9 A;  4COP A;  5F2O A;  2JYL A;  2X2B A;  2GZJ A;  2PEJ A;  2FVE A;  2N50 A;  3CCJ P;  3EJD A;  3H4E A;  4U0D A;  3DS5 A;  4WYM A;  1K8A Q;  1T8K A;  2VLQ A;  4PH0 A;  2EHT A;  4DG9 A;  2NO8 A;  2EIA A;  3B5I A;  4U0E A;  2N5H A;  1ZMB A;  1VQP P;  1KLP A;  3EJE A;  3G1I A;  2GZF A;  1AUM A;  2VLP A;  1VQO P;  2KOS A;  1Q86 Q;  3GZL A;  2KR5 A;  1EOQ A;  2PY8 A;  1YIJ P;  2GDW A;  2KOR A;  5F2K A;  3CCL P;  1RO0 A;  4CA3 A;  4H2W C;  2MR7 A;  3G71 P;  4XFZ A;  1JJ2 O;  1M90 Q;  1HY8 A;  2ERH A;  2M8L A;  2K93 A;  4U0F A;  3P05 A;  2PNG A;  5KP7 B;  4NEO A;  3GJN A;  2ONT A;  5F2N A;  2AFD A;  2Z45 A;  2KW2 A;  3HYB A;  5CZD B;  2FQ1 A;  3DS1 A;  3DS0 A;  1BXI A;  4GR2 A;  3RG2 A;  3G0V A;  1VQ4 P;  2K0Y A;  1YJW P;  1Q81 Q;  1VQL P;  1A43 A;  4IZ6 A;  2KG8 A;  3CCE P;  1Q82 Q;  2LL8 A;  3CC4 P;  1QVF O;  2GZI A;  2CNR A;  2L0Q A;  1QVG O;  2FAE A;  2LPK A;  1Q7Y Q;  1DNY A;  1VQ5 P;  4BPG A;  2MD9 A;  2MVV A;  5HGM A;  2OTJ P;  1HQB A;  2N6Z A;  2CQ8 A;  4UHP B;  1AYI A;  2XV6 A;  3HZQ A;  3CCR P;  2OAR A;  1IMQ A;  2FHS C;  2ROQ A;  3LRY A;  2KOQ A;  1RO2 A;  1QRJ A;  3DS2 A;  3DS3 A;  2JAZ A;  4BPH A;  4XFX A;  2L6E A;  2N98 A;  3CC7 P;  5HGN A;  2MVU A;  2WPT A;  5DCK A;  2K94 A;  1L0I A;  2KG6 A;  3U43 A;  5HVC A; 
#chains in the Genus database with same CATH homology
 1AYI A;  4QKO A;  2GZJ A;  1IMQ A;  2GZI A;  2ERH A;  1MZ8 A;  7CEI A;  2GZG A;  1BXI A;  2JB0 A;  2JBG A;  1UNK A;  2JAZ A;  2GYK A;  1IMP A;  2VLQ A;  1GXH A;  1FR2 A;  1UJZ A;  1ZNV A;  2VLO A;  2NO8 A;  1EMV A;  3GJN A;  2K5X A;  1GXG A;  2WPT A;  5EW5 E;  2VLN A;  4F37 A;  2GZE A;  1E0H A;  3GKL C;  1CEI A;  2K0D X;  3U43 A;  2GZF A;  4UHP B;  2VLP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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