5EW5E

Crystal structure of colicin e9 in complex with its immunity protein im9
Total Genus 25
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
83
structure length
83
Chain Sequence
LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Colicin-E9
publication title Structural and biophysical analysis of nuclease protein antibiotics.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Hydrolase
total genus 25
structure length 83
sequence length 83
chains with identical sequence F, G, H
ec nomenclature
pdb deposition date 2015-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 5ew5E00
2GZEA 2GZIA 2VLNA 3U43A 2VLOA 4F37A 2VLPA 4QKOA 1EMVA 3GKLC 1ZNVA 2JBGA 5EW5E 1IMQA 1FR2A 1MZ8A 2NO8A 2GZGA 2WPTA 4UHPB 7CEIA 1GXHA 1UNKA 2VLQA 1IMPA 1UJZA 2ERHA 2K0DX 1CEIA 1AYIA 2GYKA 2GZFA 1GXGA 3GJNA 2JAZA 1E0HA 2JB0A 1BXIA 2GZJA 2K5XA
chains in the Genus database with same CATH superfamily
3I56P 1VQ5P 3P05A 2N50A 1Q81Q 2VLPA 2CGQA 2FVFA 2GZGA 2PNGA 2FHSC 1E6JP 3DS5A 3NTEA 1M74A 2DGYA 3GZLA 2VSQA 1QRJA 2MY5A 1RO2A 2Z45A 2KOQA 4XROA 2PEKA 2XV6A 3DS3A 3CMEP 5HGNA 2CWOA 1HY8A 3OW2O 1VQ6P 4R0MA 2GZFA 4DG9A 3GJNA 3G29A 3RG6C 5HGMA 2LOLA 2GDWA 2LKIA 1EMVA 1X3OA 1YIJP 1FR2A 7CEIA 2KOSA 4XFZA 4U0FA 2FQ0A 1GXGA 3G21A 4PWVB 1VQMP 2XZ1C 1VQ7P 4CA3A 2KGDA 2K94A 2ROQA 1L0IA 3DS4A 5BS2A 2QA4P 3MGEA 4QKOA 2KG9A 1VQLP 1D1DA 3G1IA 1IMQA 1VQ4P 1ACPA 2Z44A 1Q82Q 2MR7A 3G4SP 2KG6A 3CCSP 2L4BA 4XFXA 1VQOP 4IPYA 2JYGA 1ZNVA 2K5XA 2CNRA 2CQ8A 3B5IA 1M1KQ 2FQ2A 3CCLP 2AVAA 2KORA 2DNWA 2PEIA 3CCRP 3CC7P 1GXHA 1KQSO 2GDYA 2EG5A 1K8AQ 3DPHA 3VRLC 1Z6MA 2M8LA 5I4TG 1VHNA 2GZEA 2FQ1A 2LMLA 2AFEA 2EHTA 2L9FA 2BHVA 1IUQA 2OTJP 2N5HA 4BPHA 1Q86Q 3E2DA 3H47A 1IMPA 2ERHA 2KODA 2LIWA 4PXHB 2GDXA 3HYBA 2VLOA 4BPFA 2CG5B 3CD6P 1HQBA 2JBGA 4GR6A 2NO8A 2PEQA 2WPTA 2FADA 3LRYA 1UNKA 2VLQA 3G0VA 1AYIA 2PENA 2PEJA 1RNIA 3DS0A 3CXCO 2JU1A 1A43A 2L0QA 2LPKA 5HGLA 3DTJA 1AF8A 1Q7YQ 3RG2A 4COPA 1BAJA 3CCJP 4H2YC 4PH1A 1T8KA 3WBHA 2LIUA 2KW2A 4XFYA 1VQNP 1E0HA 1M90Q 1A8OA 2OTLP 3G1GA 3DS1A 2KGEA 1EIAA 2MVVA 4U0DA 1CEIA 1RO0A 2XT1A 1KD1Q 1OR5A 3CMAP 1EOQA 2L6EA 1YJ9P 3G6EP 1VQ8P 2EIAA 2K93A 2KG8A 2XXMA 2FVAA 2JQ4A 4NEOA 4WYMA 3CC4P 1KC8Q 5F2NA 2GYKA 5CZDB 2JU2A 2KOOA 4U0AA 1NQ4A 5KP8B 3G71P 2MD9A 1QVGO 5EW5E 2AF8A 2N6ZA 2KR5A 2FAEA 3CC2P 3NY7B 4HKGA 4H2XC 2JAZA 2XZ0D 1VQPP 2PEOA 5HVCA 2MF4A 1N8RQ 2X2BA 4IZ6A 2N5IA 1M6EX 2L22A 2KOPA 5HGOA 3Q20A 3H0DA 2MVUA 2K92A 2PEMA 2M8NA 5HV8A 3H4EA 2KWLA 2MR8A 5F2KA 2JGPA 2EHSA 2K0XA 5KP7B 1YITP 2LTEA 3CCVP 3HZQA 5EJDA 3CCUP 1DV5A 2FVEA 4U0EA 1BXIA 2ONTA 4BPGA 2N6YA 1W2BO 4GR2A 1L0HA 2N98A 3CPWO 2JO0A 3DS2A 1S72P 1VQKP 1YHQP 1UJZA 2KGAA 2FACA 4U0CA 2JB0A 1VQ9P 1DNYA 1YJNP 2GZIA 4U0BA 3G26A 5F2OA 2LL8A 4M0IA 2BUOA 4F37A 3EJBA 3M1MA 1AUMA 3EJEA 3GKLC 5BS1A 2M8PA 3CE7A 2K2QA 1VKUA 2PY8A 2QEXP 3LMOA 3G28A 3I55P 3B4QA 2K0YA 1QVFO 2QNWA 1GPJA 2LF4A 1K9MQ 1YI2P 2OARA 1F80D 4QNBA 1MZ8A 2KGCA 4COCA 3EJDA 1JJ2O 4MRTC 4XRQA 3CCMP 2JYLA 3CCEP 2E1MA 5DCKA 2GZJA 3U43A 2VLNA 4H2WC 4PH0A 3GZMA 2Z46A 2EFJA 5JPAA 1K73Q 4UHPB 1KLPA 1ZMBA 2M5RA 2P9XA 5KP6B 2AFDA 1M6NA 2K0DX 3CCQP 1YJWP 1NJIQ 1K30A
chains in the Genus database with same CATH topology
2GZEA 2GZIA 2VLNA 3U43A 2VLOA 4F37A 2VLPA 4QKOA 1EMVA 3GKLC 1ZNVA 2JBGA 5EW5E 1IMQA 1FR2A 1MZ8A 2NO8A 2GZGA 2WPTA 4UHPB 7CEIA 1GXHA 1UNKA 2VLQA 1IMPA 1UJZA 2ERHA 2K0DX 1CEIA 1AYIA 2GYKA 2GZFA 1GXGA 3GJNA 2JAZA 1E0HA 2JB0A 1BXIA 2GZJA 2K5XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GZE A;  2GZI A;  2VLN A;  3U43 A;  2VLO A;  4F37 A;  2VLP A;  4QKO A;  1EMV A;  3GKL C;  1ZNV A;  2JBG A;  5EW5 E;  1IMQ A;  1FR2 A;  1MZ8 A;  2NO8 A;  2GZG A;  2WPT A;  4UHP B;  7CEI A;  1GXH A;  1UNK A;  2VLQ A;  1IMP A;  1UJZ A;  2ERH A;  2K0D X;  1CEI A;  1AYI A;  2GYK A;  2GZF A;  1GXG A;  3GJN A;  2JAZ A;  1E0H A;  2JB0 A;  1BXI A;  2GZJ A;  2K5X A; 
#chains in the Genus database with same CATH topology
 3I56 P;  1VQ5 P;  3P05 A;  2N50 A;  1Q81 Q;  2VLP A;  2CGQ A;  2FVF A;  2GZG A;  2PNG A;  2FHS C;  1E6J P;  3DS5 A;  3NTE A;  1M74 A;  2DGY A;  3GZL A;  2VSQ A;  1QRJ A;  2MY5 A;  1RO2 A;  2Z45 A;  2KOQ A;  4XRO A;  2PEK A;  2XV6 A;  3DS3 A;  3CME P;  5HGN A;  2CWO A;  1HY8 A;  3OW2 O;  1VQ6 P;  4R0M A;  2GZF A;  4DG9 A;  3GJN A;  3G29 A;  3RG6 C;  5HGM A;  2LOL A;  2GDW A;  2LKI A;  1EMV A;  1X3O A;  1YIJ P;  1FR2 A;  7CEI A;  2KOS A;  4XFZ A;  4U0F A;  2FQ0 A;  1GXG A;  3G21 A;  4PWV B;  1VQM P;  2XZ1 C;  1VQ7 P;  4CA3 A;  2KGD A;  2K94 A;  2ROQ A;  1L0I A;  3DS4 A;  5BS2 A;  2QA4 P;  3MGE A;  4QKO A;  2KG9 A;  1VQL P;  1D1D A;  3G1I A;  1IMQ A;  1VQ4 P;  1ACP A;  2Z44 A;  1Q82 Q;  2MR7 A;  3G4S P;  2KG6 A;  3CCS P;  2L4B A;  4XFX A;  1VQO P;  4IPY A;  2JYG A;  1ZNV A;  2K5X A;  2CNR A;  2CQ8 A;  3B5I A;  1M1K Q;  2FQ2 A;  3CCL P;  2AVA A;  2KOR A;  2DNW A;  2PEI A;  3CCR P;  3CC7 P;  1GXH A;  1KQS O;  2GDY A;  2EG5 A;  1K8A Q;  3DPH A;  3VRL C;  1Z6M A;  2M8L A;  5I4T G;  1VHN A;  2GZE A;  2FQ1 A;  2LML A;  2AFE A;  2EHT A;  2L9F A;  2BHV A;  1IUQ A;  2OTJ P;  2N5H A;  4BPH A;  1Q86 Q;  3E2D A;  3H47 A;  1IMP A;  2ERH A;  2KOD A;  2LIW A;  4PXH B;  2GDX A;  3HYB A;  2VLO A;  4BPF A;  2CG5 B;  3CD6 P;  1HQB A;  2JBG A;  4GR6 A;  2NO8 A;  2PEQ A;  2WPT A;  2FAD A;  3LRY A;  1UNK A;  2VLQ A;  3G0V A;  1AYI A;  2PEN A;  2PEJ A;  1RNI A;  3DS0 A;  3CXC O;  2JU1 A;  1A43 A;  2L0Q A;  2LPK A;  5HGL A;  3DTJ A;  1AF8 A;  1Q7Y Q;  3RG2 A;  4COP A;  1BAJ A;  3CCJ P;  4H2Y C;  4PH1 A;  1T8K A;  3WBH A;  2LIU A;  2KW2 A;  4XFY A;  1VQN P;  1E0H A;  1M90 Q;  1A8O A;  2OTL P;  3G1G A;  3DS1 A;  2KGE A;  1EIA A;  2MVV A;  4U0D A;  1CEI A;  1RO0 A;  2XT1 A;  1KD1 Q;  1OR5 A;  3CMA P;  1EOQ A;  2L6E A;  1YJ9 P;  3G6E P;  1VQ8 P;  2EIA A;  2K93 A;  2KG8 A;  2XXM A;  2FVA A;  2JQ4 A;  4NEO A;  4WYM A;  3CC4 P;  1KC8 Q;  5F2N A;  2GYK A;  5CZD B;  2JU2 A;  2KOO A;  4U0A A;  1NQ4 A;  5KP8 B;  3G71 P;  2MD9 A;  1QVG O;  5EW5 E;  2AF8 A;  2N6Z A;  2KR5 A;  2FAE A;  3CC2 P;  3NY7 B;  4HKG A;  4H2X C;  2JAZ A;  2XZ0 D;  1VQP P;  2PEO A;  5HVC A;  2MF4 A;  1N8R Q;  2X2B A;  4IZ6 A;  2N5I A;  1M6E X;  2L22 A;  2KOP A;  5HGO A;  3Q20 A;  3H0D A;  2MVU A;  2K92 A;  2PEM A;  2M8N A;  5HV8 A;  3H4E A;  2KWL A;  2MR8 A;  5F2K A;  2JGP A;  2EHS A;  2K0X A;  5KP7 B;  1YIT P;  2LTE A;  3CCV P;  3HZQ A;  5EJD A;  3CCU P;  1DV5 A;  2FVE A;  4U0E A;  1BXI A;  2ONT A;  4BPG A;  2N6Y A;  1W2B O;  4GR2 A;  1L0H A;  2N98 A;  3CPW O;  2JO0 A;  3DS2 A;  1S72 P;  1VQK P;  1YHQ P;  1UJZ A;  2KGA A;  2FAC A;  4U0C A;  2JB0 A;  1VQ9 P;  1DNY A;  1YJN P;  2GZI A;  4U0B A;  3G26 A;  5F2O A;  2LL8 A;  4M0I A;  2BUO A;  4F37 A;  3EJB A;  3M1M A;  1AUM A;  3EJE A;  3GKL C;  5BS1 A;  2M8P A;  3CE7 A;  2K2Q A;  1VKU A;  2PY8 A;  2QEX P;  3LMO A;  3G28 A;  3I55 P;  3B4Q A;  2K0Y A;  1QVF O;  2QNW A;  1GPJ A;  2LF4 A;  1K9M Q;  1YI2 P;  2OAR A;  1F80 D;  4QNB A;  1MZ8 A;  2KGC A;  4COC A;  3EJD A;  1JJ2 O;  4MRT C;  4XRQ A;  3CCM P;  2JYL A;  3CCE P;  2E1M A;  5DCK A;  2GZJ A;  3U43 A;  2VLN A;  4H2W C;  4PH0 A;  3GZM A;  2Z46 A;  2EFJ A;  5JPA A;  1K73 Q;  4UHP B;  1KLP A;  1ZMB A;  2M5R A;  2P9X A;  5KP6 B;  2AFD A;  1M6N A;  2K0D X;  3CCQ P;  1YJW P;  1NJI Q;  1K30 A; 
#chains in the Genus database with same CATH homology
 2GZE A;  2GZI A;  2VLN A;  3U43 A;  2VLO A;  4F37 A;  2VLP A;  4QKO A;  1EMV A;  3GKL C;  1ZNV A;  2JBG A;  5EW5 E;  1IMQ A;  1FR2 A;  1MZ8 A;  2NO8 A;  2GZG A;  2WPT A;  4UHP B;  7CEI A;  1GXH A;  1UNK A;  2VLQ A;  1IMP A;  1UJZ A;  2ERH A;  2K0D X;  1CEI A;  1AYI A;  2GYK A;  2GZF A;  1GXG A;  3GJN A;  2JAZ A;  1E0H A;  2JB0 A;  1BXI A;  2GZJ A;  2K5X A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...