5EW5E

Crystal structure of colicin e9 in complex with its immunity protein im9
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
83
structure length
83
Chain Sequence
LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Colicin-E9
publication title Structural and biophysical analysis of nuclease protein antibiotics.
pubmed doi rcsb
source organism Escherichia coli
total genus 25
structure length 83
sequence length 83
chains with identical sequence F, G, H
ec nomenclature
pdb deposition date 2015-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 5ew5E00
4QKOA 3GJNA 3U43A 2GZIA 1E0HA 2GZFA 2WPTA 1AYIA 2K0DX 2GYKA 1ZNVA 7CEIA 1MZ8A 2JB0A 2GZEA 1FR2A 4UHPB 2VLNA 2JBGA 1EMVA 1GXGA 2ERHA 2VLOA 2GZGA 3GKLC 1UNKA 2VLPA 1GXHA 2GZJA 1IMQA 4F37A 1CEIA 2JAZA 1BXIA 1IMPA 1UJZA 2K5XA 5EW5E 2VLQA 2NO8A
chains in the Genus database with same CATH superfamily
2XXMA 2FQ0A 2CNRA 2GZFA 3G29A 1AYIA 1BAJA 2XZ1C 1YJNP 1F80D 2N5HA 3DS3A 1IUQA 2GZEA 3DS5A 3M1MA 2PEIA 1Q81Q 3CCUP 2N5IA 2KR5A 1M6EX 1A43A 3G4SP 2MF4A 1IMPA 3H4EA 2JO0A 2ONTA 4U0EA 1Q86Q 3HYBA 2FQ2A 1E6JP 2LL8A 2N6YA 1FR2A 2LIUA 2M8NA 1A8OA 2L0QA 1DV5A 4XROA 3CC4P 5KP8B 3G28A 1OR5A 2M8PA 1NQ4A 2PEMA 2JYLA 3B5IA 3CXCO 2KODA 2K92A 7CEIA 1MZ8A 2MR7A 2KGDA 2VLNA 2X2BA 1M74A 5BS2A 5KP6B 1YJWP 1VQPP 1NJIQ 2K5XA 2L4BA 4PH0A 2KOPA 5DCKA 2MR8A 4R0MA 2WPTA 3GZMA 3EJEA 2LTEA 3CCEP 1Z6MA 1K30A 1RNIA 4U0FA 2KGCA 1M6NA 4F37A 2CG5B 4U0AA 4QKOA 3MGEA 1X3OA 3CCRP 5HGLA 1YITP 2GDXA 2K0YA 2XT1A 2LIWA 1Q7YQ 2Z44A 1K73Q 2EG5A 2EHSA 1KC8Q 1L0HA 1VQOP 1YI2P 2OTJP 1GXHA 3DPHA 2LPKA 2VLQA 1VKUA 2JU2A 1YIJP 3DS1A 2PEJA 3RG6C 2OTLP 5HGMA 3CCLP 1UNKA 2EIAA 2GZJA 2MY5A 1JJ2O 4PXHB 1CEIA 3Q20A 1W2BO 3CE7A 3G1GA 3G0VA 3G21A 2FHSC 4HKGA 5HVCA 3G71P 1VQMP 2JGPA 4XRQA 2PEKA 1VQNP 2JQ4A 3CCSP 2VLPA 3CMEP 3CC2P 2PNGA 4CA3A 3GJNA 2GZIA 2LOLA 5CZDB 2KOSA 3DTJA 4XFYA 5BS1A 1D1DA 2K0XA 2L22A 1GPJA 5I4TG 1QVGO 5HGOA 1VQ6P 3B4QA 1IMQA 1BXIA 4U0DA 5F2KA 2K93A 4NEOA 1ZMBA 1ACPA 2JYGA 2JBGA 3LRYA 1RO2A 1VQ4P 2XZ0D 1VQKP 2DGYA 2LF4A 4PH1A 2M8LA 2FVFA 4H2WC 3OW2O 4MRTC 2NO8A 3EJDA 2FACA 2FAEA 2KG6A 1T8KA 1VQ9P 3NTEA 1QVFO 3H0DA 2MVVA 3CCJP 3CD6P 2N6ZA 2AF8A 2L6EA 5JPAA 1S72P 3WBHA 5KP7B 1VQ5P 2VSQA 2BUOA 1HY8A 2Z45A 4BPFA 4GR2A 2CQ8A 3EJBA 2LKIA 1L0IA 3CMAP 2K0DX 2EFJA 4IZ6A 1EIAA 1ZNVA 2GDWA 1Q82Q 1KQSO 3CC7P 2QA4P 3DS2A 1AF8A 1KD1Q 5F2NA 3P05A 3I56P 2QEXP 2KOOA 3GZLA 1EOQA 2KWLA 4H2YC 2DNWA 2KGAA 1K8AQ 4DG9A 1VQ7P 1VQLP 2ERHA 1RO0A 2PEQA 3G26A 1AUMA 2PENA 2CWOA 3RG2A 1DNYA 4GR6A 3VRLC 2FVEA 5HGNA 4WYMA 3DS4A 4COCA 2KOQA 3DS0A 2QNWA 2K2QA 5F2OA 4PWVB 2FADA 1N8RQ 2GDYA 4UHPB 4QNBA 2EHTA 2MVUA 3NY7B 3E2DA 2GZGA 2XV6A 3GKLC 2JU1A 2BHVA 3CPWO 3CCQP 2OARA 2JAZA 1YJ9P 3CCMP 2N50A 2FVAA 2KG9A 2N98A 1VQ8P 3U43A 3LMOA 2K94A 2KG8A 2P9XA 4COPA 2Z46A 3CCVP 4IPYA 2PY8A 2E1MA 1KLPA 1HQBA 3G1IA 2CGQA 2AVAA 1YHQP 4H2XC 2LMLA 1E0HA 2PEOA 2FQ1A 3I55P 2GYKA 3H47A 2M5RA 4U0CA 2L9FA 4XFXA 1EMVA 1GXGA 2ROQA 2KW2A 3G6EP 5EJDA 1UJZA 2AFEA 1M1KQ 2KORA 4XFZA 4BPGA 2MD9A 4M0IA 1M90Q 1K9MQ 2JB0A 1QRJA 2VLOA 3HZQA 4BPHA 2AFDA 4U0BA 1VHNA 5EW5E 5HV8A 2KGEA
chains in the Genus database with same CATH topology
4QKOA 3GJNA 3U43A 2GZIA 1E0HA 2GZFA 2WPTA 1AYIA 2K0DX 2GYKA 1ZNVA 7CEIA 1MZ8A 2JB0A 2GZEA 1FR2A 4UHPB 2VLNA 2JBGA 1EMVA 1GXGA 2ERHA 2VLOA 2GZGA 3GKLC 1UNKA 2VLPA 1GXHA 2GZJA 1IMQA 4F37A 1CEIA 2JAZA 1BXIA 1IMPA 1UJZA 2K5XA 5EW5E 2VLQA 2NO8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QKO A;  3GJN A;  3U43 A;  2GZI A;  1E0H A;  2GZF A;  2WPT A;  1AYI A;  2K0D X;  2GYK A;  1ZNV A;  7CEI A;  1MZ8 A;  2JB0 A;  2GZE A;  1FR2 A;  4UHP B;  2VLN A;  2JBG A;  1EMV A;  1GXG A;  2ERH A;  2VLO A;  2GZG A;  3GKL C;  1UNK A;  2VLP A;  1GXH A;  2GZJ A;  1IMQ A;  4F37 A;  1CEI A;  2JAZ A;  1BXI A;  1IMP A;  1UJZ A;  2K5X A;  5EW5 E;  2VLQ A;  2NO8 A; 
#chains in the Genus database with same CATH topology
 2XXM A;  2FQ0 A;  2CNR A;  2GZF A;  3G29 A;  1AYI A;  1BAJ A;  2XZ1 C;  1YJN P;  1F80 D;  2N5H A;  3DS3 A;  1IUQ A;  2GZE A;  3DS5 A;  3M1M A;  2PEI A;  1Q81 Q;  3CCU P;  2N5I A;  2KR5 A;  1M6E X;  1A43 A;  3G4S P;  2MF4 A;  1IMP A;  3H4E A;  2JO0 A;  2ONT A;  4U0E A;  1Q86 Q;  3HYB A;  2FQ2 A;  1E6J P;  2LL8 A;  2N6Y A;  1FR2 A;  2LIU A;  2M8N A;  1A8O A;  2L0Q A;  1DV5 A;  4XRO A;  3CC4 P;  5KP8 B;  3G28 A;  1OR5 A;  2M8P A;  1NQ4 A;  2PEM A;  2JYL A;  3B5I A;  3CXC O;  2KOD A;  2K92 A;  7CEI A;  1MZ8 A;  2MR7 A;  2KGD A;  2VLN A;  2X2B A;  1M74 A;  5BS2 A;  5KP6 B;  1YJW P;  1VQP P;  1NJI Q;  2K5X A;  2L4B A;  4PH0 A;  2KOP A;  5DCK A;  2MR8 A;  4R0M A;  2WPT A;  3GZM A;  3EJE A;  2LTE A;  3CCE P;  1Z6M A;  1K30 A;  1RNI A;  4U0F A;  2KGC A;  1M6N A;  4F37 A;  2CG5 B;  4U0A A;  4QKO A;  3MGE A;  1X3O A;  3CCR P;  5HGL A;  1YIT P;  2GDX A;  2K0Y A;  2XT1 A;  2LIW A;  1Q7Y Q;  2Z44 A;  1K73 Q;  2EG5 A;  2EHS A;  1KC8 Q;  1L0H A;  1VQO P;  1YI2 P;  2OTJ P;  1GXH A;  3DPH A;  2LPK A;  2VLQ A;  1VKU A;  2JU2 A;  1YIJ P;  3DS1 A;  2PEJ A;  3RG6 C;  2OTL P;  5HGM A;  3CCL P;  1UNK A;  2EIA A;  2GZJ A;  2MY5 A;  1JJ2 O;  4PXH B;  1CEI A;  3Q20 A;  1W2B O;  3CE7 A;  3G1G A;  3G0V A;  3G21 A;  2FHS C;  4HKG A;  5HVC A;  3G71 P;  1VQM P;  2JGP A;  4XRQ A;  2PEK A;  1VQN P;  2JQ4 A;  3CCS P;  2VLP A;  3CME P;  3CC2 P;  2PNG A;  4CA3 A;  3GJN A;  2GZI A;  2LOL A;  5CZD B;  2KOS A;  3DTJ A;  4XFY A;  5BS1 A;  1D1D A;  2K0X A;  2L22 A;  1GPJ A;  5I4T G;  1QVG O;  5HGO A;  1VQ6 P;  3B4Q A;  1IMQ A;  1BXI A;  4U0D A;  5F2K A;  2K93 A;  4NEO A;  1ZMB A;  1ACP A;  2JYG A;  2JBG A;  3LRY A;  1RO2 A;  1VQ4 P;  2XZ0 D;  1VQK P;  2DGY A;  2LF4 A;  4PH1 A;  2M8L A;  2FVF A;  4H2W C;  3OW2 O;  4MRT C;  2NO8 A;  3EJD A;  2FAC A;  2FAE A;  2KG6 A;  1T8K A;  1VQ9 P;  3NTE A;  1QVF O;  3H0D A;  2MVV A;  3CCJ P;  3CD6 P;  2N6Z A;  2AF8 A;  2L6E A;  5JPA A;  1S72 P;  3WBH A;  5KP7 B;  1VQ5 P;  2VSQ A;  2BUO A;  1HY8 A;  2Z45 A;  4BPF A;  4GR2 A;  2CQ8 A;  3EJB A;  2LKI A;  1L0I A;  3CMA P;  2K0D X;  2EFJ A;  4IZ6 A;  1EIA A;  1ZNV A;  2GDW A;  1Q82 Q;  1KQS O;  3CC7 P;  2QA4 P;  3DS2 A;  1AF8 A;  1KD1 Q;  5F2N A;  3P05 A;  3I56 P;  2QEX P;  2KOO A;  3GZL A;  1EOQ A;  2KWL A;  4H2Y C;  2DNW A;  2KGA A;  1K8A Q;  4DG9 A;  1VQ7 P;  1VQL P;  2ERH A;  1RO0 A;  2PEQ A;  3G26 A;  1AUM A;  2PEN A;  2CWO A;  3RG2 A;  1DNY A;  4GR6 A;  3VRL C;  2FVE A;  5HGN A;  4WYM A;  3DS4 A;  4COC A;  2KOQ A;  3DS0 A;  2QNW A;  2K2Q A;  5F2O A;  4PWV B;  2FAD A;  1N8R Q;  2GDY A;  4UHP B;  4QNB A;  2EHT A;  2MVU A;  3NY7 B;  3E2D A;  2GZG A;  2XV6 A;  3GKL C;  2JU1 A;  2BHV A;  3CPW O;  3CCQ P;  2OAR A;  2JAZ A;  1YJ9 P;  3CCM P;  2N50 A;  2FVA A;  2KG9 A;  2N98 A;  1VQ8 P;  3U43 A;  3LMO A;  2K94 A;  2KG8 A;  2P9X A;  4COP A;  2Z46 A;  3CCV P;  4IPY A;  2PY8 A;  2E1M A;  1KLP A;  1HQB A;  3G1I A;  2CGQ A;  2AVA A;  1YHQ P;  4H2X C;  2LML A;  1E0H A;  2PEO A;  2FQ1 A;  3I55 P;  2GYK A;  3H47 A;  2M5R A;  4U0C A;  2L9F A;  4XFX A;  1EMV A;  1GXG A;  2ROQ A;  2KW2 A;  3G6E P;  5EJD A;  1UJZ A;  2AFE A;  1M1K Q;  2KOR A;  4XFZ A;  4BPG A;  2MD9 A;  4M0I A;  1M90 Q;  1K9M Q;  2JB0 A;  1QRJ A;  2VLO A;  3HZQ A;  4BPH A;  2AFD A;  4U0B A;  1VHN A;  5EW5 E;  5HV8 A;  2KGE A; 
#chains in the Genus database with same CATH homology
 4QKO A;  3GJN A;  3U43 A;  2GZI A;  1E0H A;  2GZF A;  2WPT A;  1AYI A;  2K0D X;  2GYK A;  1ZNV A;  7CEI A;  1MZ8 A;  2JB0 A;  2GZE A;  1FR2 A;  4UHP B;  2VLN A;  2JBG A;  1EMV A;  1GXG A;  2ERH A;  2VLO A;  2GZG A;  3GKL C;  1UNK A;  2VLP A;  1GXH A;  2GZJ A;  1IMQ A;  4F37 A;  1CEI A;  2JAZ A;  1BXI A;  1IMP A;  1UJZ A;  2K5X A;  5EW5 E;  2VLQ A;  2NO8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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