2PEQA

Crystal structure of rbcx, crystal form ii
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
109
structure length
109
Chain Sequence
MEFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and Function of RbcX, an Assembly Chaperone for Hexadecameric Rubisco.
pubmed doi rcsb
molecule tags Chaperone
source organism Synechococcus sp.
molecule keywords ORF134
total genus 49
structure length 109
sequence length 109
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02341 RcbX RbcX protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2peqA00
4GR6A 2Z44A 2PY8A 2Z46A 3Q20A 2PEIA 2PENA 3RG6C 2PEMA 5BS1A 2PEOA 5BS2A 2Z45A 3HYBA 2PEQA 2PEKA 4GR2A 2PEJA
chains in the Genus database with same CATH superfamily
1UJZA 1VQMP 1YJ9P 1VQ5P 1RO2A 2XZ1C 2JU1A 2PEKA 3EJEA 5F2KA 1Q82Q 4PH0A 3RG2A 4BPGA 5CZDB 2FQ1A 1E0HA 2KWLA 2LPKA 2VSQA 1YI2P 1ACPA 1A8OA 2MR7A 2NO8A 4NEOA 1VQOP 3WBHA 5HGLA 5F2OA 3DS0A 2CGQA 2JBGA 2OARA 2FAEA 3G29A 1HQBA 2N98A 5BS2A 4U0CA 2JQ4A 2N50A 2OTJP 4H2WC 2KORA 1GPJA 5I4TG 3CC2P 1JJ2O 2GZFA 2MVVA 4H2YC 1NQ4A 5KP6B 3CCEP 2GYKA 1VQNP 2DGYA 2MY5A 2LTEA 4MRTC 1X3OA 3B5IA 1QVGO 7CEIA 3DS4A 3G28A 3CD6P 3CCVP 2FVFA 2XV6A 2QEXP 3HYBA 1VHNA 2EHTA 2FVEA 2VLPA 1IMQA 1VQ9P 1VKUA 1K8AQ 1M1KQ 1W2BO 2N6ZA 3CCQP 1YJWP 2EHSA 2PNGA 2N5IA 3NY7B 2BHVA 1KD1Q 1HY8A 3DS3A 3LRYA 1VQ7P 3CMEP 3CC7P 2LKIA 5HGNA 2LMLA 3EJBA 2LOLA 1RNIA 2ONTA 1BAJA 3GZMA 4DG9A 1NJIQ 2GZEA 2LIUA 1F80D 3DS2A 2M5RA 1L0IA 3H0DA 4WYMA 1RO0A 4XFZA 3CCJP 2QA4P 3RG6C 2JO0A 1VQ6P 1MZ8A 2VLNA 1IUQA 2WPTA 3HZQA 2CWOA 2KGCA 3MGEA 3G0VA 1M74A 2VLOA 4R0MA 1N8RQ 1Q81Q 5BS1A 2PEQA 1S72P 1EIAA 2N6YA 4GR2A 2K5XA 1VQKP 1GXHA 5EW5E 2JAZA 2GDXA 2K2QA 2L22A 2Z44A 2AVAA 2K92A 1AF8A 4XROA 3DTJA 4COPA 2PY8A 1VQ4P 2XZ0D 2GZJA 4XFXA 3GKLC 5HVCA 1CEIA 3CXCO 2K0DX 4BPHA 3G1GA 2KOQA 3CCMP 2JGPA 2JU2A 1K73Q 4UHPB 4PWVB 4PH1A 4QNBA 2AF8A 5DCKA 1BXIA 2K0YA 4U0AA 5HGMA 2EG5A 2L9FA 3B4QA 1GXGA 2MF4A 5F2NA 2KG6A 2M8LA 2AFEA 3CCRP 2KODA 2PEIA 2KOOA 5HV8A 2FQ0A 3G71P 3CMAP 2JYGA 5JPAA 2GZGA 3NTEA 2L6EA 4CA3A 1A43A 4XRQA 2E1MA 2KG9A 3G26A 3CCSP 3DS5A 2LF4A 4IPYA 2FVAA 1QRJA 2LL8A 4H2XC 2KG8A 1VQ8P 2CQ8A 2MR8A 3I56P 2FHSC 2L4BA 2CG5B 4M0IA 3CCLP 1VQPP 2OTLP 4COCA 2FADA 1ZNVA 4U0BA 2Z46A 1E6JP 2JYLA 5KP7B 3I55P 4GR6A 2PEJA 1FR2A 2P9XA 1KC8Q 2KOSA 4HKGA 3G4SP 1AUMA 2XT1A 1YJNP 1DV5A 4QKOA 5KP8B 1UNKA 1M6EX 2VLQA 3LMOA 2QNWA 3DS1A 2Z45A 3H47A 2K0XA 3DPHA 3G21A 1QVFO 3M1MA 2L0QA 1D1DA 3G1IA 1M90Q 2ROQA 2FQ2A 2ERHA 2N5HA 3GJNA 2KGAA 2KW2A 3U43A 1EMVA 2AFDA 3E2DA 2MVUA 4U0FA 2JB0A 3EJDA 3VRLC 3CE7A 2LIWA 1EOQA 2KGEA 2XXMA 1T8KA 2GZIA 3CC4P 1IMPA 1Q7YQ 1OR5A 1K9MQ 2MD9A 5HGOA 2KOPA 1VQLP 3Q20A 1KLPA 2PENA 3H4EA 2KGDA 2EIAA 3G6EP 4U0DA 5EJDA 3P05A 1YIJP 2K94A 2M8NA 2GDWA 2K93A 4XFYA 1K30A 1L0HA 1AYIA 4BPFA 1Q86Q 1DNYA 2X2BA 4U0EA 2PEMA 2BUOA 1ZMBA 2FACA 3CPWO 2GDYA 2M8PA 1YHQP 1Z6MA 4F37A 2PEOA 4PXHB 3CCUP 2EFJA 4IZ6A 3OW2O 1YITP 2DNWA 1KQSO 1M6NA 2KR5A 3GZLA 2CNRA
chains in the Genus database with same CATH topology
1W2BO 1K73Q 3CCQP 3DS1A 2Z45A 1YJWP 3H47A 4PH1A 4QNBA 2BHVA 3DPHA 1VQMP 1YJ9P 3G21A 1KD1Q 3DS3A 1VQ5P 3LRYA 1VQ7P 1QVFO 1RO2A 5DCKA 2PEKA 3M1MA 3CMEP 1D1DA 3CC7P 3G1IA 5HGNA 1M90Q 5F2KA 1Q82Q 4PH0A 4U0AA 5HGMA 1RNIA 2EG5A 2ONTA 3E2DA 5F2NA 2M8LA 4U0FA 3CCRP 3VRLC 1BAJA 2KODA 2PEIA 1EOQA 2XXMA 1NJIQ 1YI2P 1A8OA 3DS2A 3CC4P 1Q7YQ 3H0DA 1VQOP 3WBHA 5HGLA 3G71P 3CMAP 4WYMA 1RO0A 1K9MQ 2JYGA 5F2OA 3DS0A 4XFZA 3CCJP 2OARA 2QA4P 3RG6C 5HGOA 2JO0A 3G29A 5JPAA 1VQ6P 1VQLP 3NTEA 2L6EA 1A43A 3Q20A 1IUQA 2E1MA 2PENA 3H4EA 4XRQA 3HZQA 5BS2A 3G26A 2CWOA 2EIAA 3DS5A 2LF4A 4U0CA 3G6EP 3CCSP 3MGEA 4U0DA 3G0VA 1M74A 4IPYA 2OTJP 1N8RQ 3P05A 5I4TG 1QRJA 1YIJP 3CC2P 1Q81Q 2M8NA 1JJ2O 4XFYA 1K30A 1VQ8P 5BS1A 3I56P 2PEQA 1Q86Q 1S72P 1EIAA 4GR2A 4U0EA 1VQKP 2PEMA 4M0IA 3CCLP 3CCEP 2BUOA 1VQPP 1VQNP 2OTLP 2Z44A 2DGYA 1ZMBA 3CPWO 4COCA 4U0BA 3DTJA 4XROA 2M8PA 2PY8A 4COPA 1YHQP 2Z46A 1VQ4P 1E6JP 2JYLA 2PEOA 3B5IA 1QVGO 3I55P 4GR6A 3CCUP 4XFXA 2PEJA 3DS4A 3G28A 3CD6P 3CCVP 2XV6A 3CXCO 2P9XA 2QEXP 1KC8Q 2EFJA 3OW2O 1YITP 3HYBA 3G4SP 1AUMA 2XT1A 1YJNP 1KQSO 1VQ9P 3G1GA 1M6NA 3CCMP 1M6EX 1K8AQ 1M1KQ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GR6 A;  2Z44 A;  2PY8 A;  2Z46 A;  3Q20 A;  2PEI A;  2PEN A;  3RG6 C;  2PEM A;  5BS1 A;  2PEO A;  5BS2 A;  2Z45 A;  3HYB A;  2PEQ A;  2PEK A;  4GR2 A;  2PEJ A; 
#chains in the Genus database with same CATH topology
 1UJZ A;  1VQM P;  1YJ9 P;  1VQ5 P;  1RO2 A;  2XZ1 C;  2JU1 A;  2PEK A;  3EJE A;  5F2K A;  1Q82 Q;  4PH0 A;  3RG2 A;  4BPG A;  5CZD B;  2FQ1 A;  1E0H A;  2KWL A;  2LPK A;  2VSQ A;  1YI2 P;  1ACP A;  1A8O A;  2MR7 A;  2NO8 A;  4NEO A;  1VQO P;  3WBH A;  5HGL A;  5F2O A;  3DS0 A;  2CGQ A;  2JBG A;  2OAR A;  2FAE A;  3G29 A;  1HQB A;  2N98 A;  5BS2 A;  4U0C A;  2JQ4 A;  2N50 A;  2OTJ P;  4H2W C;  2KOR A;  1GPJ A;  5I4T G;  3CC2 P;  1JJ2 O;  2GZF A;  2MVV A;  4H2Y C;  1NQ4 A;  5KP6 B;  3CCE P;  2GYK A;  1VQN P;  2DGY A;  2MY5 A;  2LTE A;  4MRT C;  1X3O A;  3B5I A;  1QVG O;  7CEI A;  3DS4 A;  3G28 A;  3CD6 P;  3CCV P;  2FVF A;  2XV6 A;  2QEX P;  3HYB A;  1VHN A;  2EHT A;  2FVE A;  2VLP A;  1IMQ A;  1VQ9 P;  1VKU A;  1K8A Q;  1M1K Q;  1W2B O;  2N6Z A;  3CCQ P;  1YJW P;  2EHS A;  2PNG A;  2N5I A;  3NY7 B;  2BHV A;  1KD1 Q;  1HY8 A;  3DS3 A;  3LRY A;  1VQ7 P;  3CME P;  3CC7 P;  2LKI A;  5HGN A;  2LML A;  3EJB A;  2LOL A;  1RNI A;  2ONT A;  1BAJ A;  3GZM A;  4DG9 A;  1NJI Q;  2GZE A;  2LIU A;  1F80 D;  3DS2 A;  2M5R A;  1L0I A;  3H0D A;  4WYM A;  1RO0 A;  4XFZ A;  3CCJ P;  2QA4 P;  3RG6 C;  2JO0 A;  1VQ6 P;  1MZ8 A;  2VLN A;  1IUQ A;  2WPT A;  3HZQ A;  2CWO A;  2KGC A;  3MGE A;  3G0V A;  1M74 A;  2VLO A;  4R0M A;  1N8R Q;  1Q81 Q;  5BS1 A;  2PEQ A;  1S72 P;  1EIA A;  2N6Y A;  4GR2 A;  2K5X A;  1VQK P;  1GXH A;  5EW5 E;  2JAZ A;  2GDX A;  2K2Q A;  2L22 A;  2Z44 A;  2AVA A;  2K92 A;  1AF8 A;  4XRO A;  3DTJ A;  4COP A;  2PY8 A;  1VQ4 P;  2XZ0 D;  2GZJ A;  4XFX A;  3GKL C;  5HVC A;  1CEI A;  3CXC O;  2K0D X;  4BPH A;  3G1G A;  2KOQ A;  3CCM P;  2JGP A;  2JU2 A;  1K73 Q;  4UHP B;  4PWV B;  4PH1 A;  4QNB A;  2AF8 A;  5DCK A;  1BXI A;  2K0Y A;  4U0A A;  5HGM A;  2EG5 A;  2L9F A;  3B4Q A;  1GXG A;  2MF4 A;  5F2N A;  2KG6 A;  2M8L A;  2AFE A;  3CCR P;  2KOD A;  2PEI A;  2KOO A;  5HV8 A;  2FQ0 A;  3G71 P;  3CMA P;  2JYG A;  5JPA A;  2GZG A;  3NTE A;  2L6E A;  4CA3 A;  1A43 A;  4XRQ A;  2E1M A;  2KG9 A;  3G26 A;  3CCS P;  3DS5 A;  2LF4 A;  4IPY A;  2FVA A;  1QRJ A;  2LL8 A;  4H2X C;  2KG8 A;  1VQ8 P;  2CQ8 A;  2MR8 A;  3I56 P;  2FHS C;  2L4B A;  2CG5 B;  4M0I A;  3CCL P;  1VQP P;  2OTL P;  4COC A;  2FAD A;  1ZNV A;  4U0B A;  2Z46 A;  1E6J P;  2JYL A;  5KP7 B;  3I55 P;  4GR6 A;  2PEJ A;  1FR2 A;  2P9X A;  1KC8 Q;  2KOS A;  4HKG A;  3G4S P;  1AUM A;  2XT1 A;  1YJN P;  1DV5 A;  4QKO A;  5KP8 B;  1UNK A;  1M6E X;  2VLQ A;  3LMO A;  2QNW A;  3DS1 A;  2Z45 A;  3H47 A;  2K0X A;  3DPH A;  3G21 A;  1QVF O;  3M1M A;  2L0Q A;  1D1D A;  3G1I A;  1M90 Q;  2ROQ A;  2FQ2 A;  2ERH A;  2N5H A;  3GJN A;  2KGA A;  2KW2 A;  3U43 A;  1EMV A;  2AFD A;  3E2D A;  2MVU A;  4U0F A;  2JB0 A;  3EJD A;  3VRL C;  3CE7 A;  2LIW A;  1EOQ A;  2KGE A;  2XXM A;  1T8K A;  2GZI A;  3CC4 P;  1IMP A;  1Q7Y Q;  1OR5 A;  1K9M Q;  2MD9 A;  5HGO A;  2KOP A;  1VQL P;  3Q20 A;  1KLP A;  2PEN A;  3H4E A;  2KGD A;  2EIA A;  3G6E P;  4U0D A;  5EJD A;  3P05 A;  1YIJ P;  2K94 A;  2M8N A;  2GDW A;  2K93 A;  4XFY A;  1K30 A;  1L0H A;  1AYI A;  4BPF A;  1Q86 Q;  1DNY A;  2X2B A;  4U0E A;  2PEM A;  2BUO A;  1ZMB A;  2FAC A;  3CPW O;  2GDY A;  2M8P A;  1YHQ P;  1Z6M A;  4F37 A;  2PEO A;  4PXH B;  3CCU P;  2EFJ A;  4IZ6 A;  3OW2 O;  1YIT P;  2DNW A;  1KQS O;  1M6N A;  2KR5 A;  3GZL A;  2CNR A; 
#chains in the Genus database with same CATH homology
 1W2B O;  1K73 Q;  3CCQ P;  3DS1 A;  2Z45 A;  1YJW P;  3H47 A;  4PH1 A;  4QNB A;  2BHV A;  3DPH A;  1VQM P;  1YJ9 P;  3G21 A;  1KD1 Q;  3DS3 A;  1VQ5 P;  3LRY A;  1VQ7 P;  1QVF O;  1RO2 A;  5DCK A;  2PEK A;  3M1M A;  3CME P;  1D1D A;  3CC7 P;  3G1I A;  5HGN A;  1M90 Q;  5F2K A;  1Q82 Q;  4PH0 A;  4U0A A;  5HGM A;  1RNI A;  2EG5 A;  2ONT A;  3E2D A;  5F2N A;  2M8L A;  4U0F A;  3CCR P;  3VRL C;  1BAJ A;  2KOD A;  2PEI A;  1EOQ A;  2XXM A;  1NJI Q;  1YI2 P;  1A8O A;  3DS2 A;  3CC4 P;  1Q7Y Q;  3H0D A;  1VQO P;  3WBH A;  5HGL A;  3G71 P;  3CMA P;  4WYM A;  1RO0 A;  1K9M Q;  2JYG A;  5F2O A;  3DS0 A;  4XFZ A;  3CCJ P;  2OAR A;  2QA4 P;  3RG6 C;  5HGO A;  2JO0 A;  3G29 A;  5JPA A;  1VQ6 P;  1VQL P;  3NTE A;  2L6E A;  1A43 A;  3Q20 A;  1IUQ A;  2E1M A;  2PEN A;  3H4E A;  4XRQ A;  3HZQ A;  5BS2 A;  3G26 A;  2CWO A;  2EIA A;  3DS5 A;  2LF4 A;  4U0C A;  3G6E P;  3CCS P;  3MGE A;  4U0D A;  3G0V A;  1M74 A;  4IPY A;  2OTJ P;  1N8R Q;  3P05 A;  5I4T G;  1QRJ A;  1YIJ P;  3CC2 P;  1Q81 Q;  2M8N A;  1JJ2 O;  4XFY A;  1K30 A;  1VQ8 P;  5BS1 A;  3I56 P;  2PEQ A;  1Q86 Q;  1S72 P;  1EIA A;  4GR2 A;  4U0E A;  1VQK P;  2PEM A;  4M0I A;  3CCL P;  3CCE P;  2BUO A;  1VQP P;  1VQN P;  2OTL P;  2Z44 A;  2DGY A;  1ZMB A;  3CPW O;  4COC A;  4U0B A;  3DTJ A;  4XRO A;  2M8P A;  2PY8 A;  4COP A;  1YHQ P;  2Z46 A;  1VQ4 P;  1E6J P;  2JYL A;  2PEO A;  3B5I A;  1QVG O;  3I55 P;  4GR6 A;  3CCU P;  4XFX A;  2PEJ A;  3DS4 A;  3G28 A;  3CD6 P;  3CCV P;  2XV6 A;  3CXC O;  2P9X A;  2QEX P;  1KC8 Q;  2EFJ A;  3OW2 O;  1YIT P;  3HYB A;  3G4S P;  1AUM A;  2XT1 A;  1YJN P;  1KQS O;  1VQ9 P;  3G1G A;  1M6N A;  3CCM P;  1M6E X;  1K8A Q;  1M1K Q; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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