1BAJA

Hiv-1 capsid protein c-terminal fragment plus gag p2 domain
Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
71
structure length
71
Chain Sequence
TSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTAC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Human immunodeficiency virus 1
publication title Structures of the HIV-1 capsid protein dimerization domain at 2.6 A resolution.
pubmed doi rcsb
molecule keywords GAG POLYPROTEIN
total genus 23
structure length 71
sequence length 71
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 1998-04-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 1bajA00
3DS0A 3G1GA 3DS2A 3DPHA 3DS4A 1A8OA 1EIAA 3NTEA 2XT1A 4U0FA 4XROA 2M8LA 3G21A 3G28A 4XFZA 3H4EA 1QRJA 4U0AA 4U0BA 4WYMA 3MGEA 3P05A 2JYLA 5HGNA 2EIAA 4PH1A 2XV6A 5DCKA 5HGLA 4XFYA 1EOQA 5I4TG 1AUMA 3G29A 3G1IA 3H47A 3DS3A 3G0VA 4QNBA 3VRLC 4XRQA 1A43A 2ONTA 5JPAA 5HGOA 1D1DA 2M8PA 2KODA 2XXMA 4IPYA 2L6EA 3DTJA 5HGMA 4U0CA 3G26A 1E6JP 4M0IA 4U0EA 3DS1A 2LF4A 2M8NA 4COPA 3DS5A 1BAJA 3LRYA 4COCA 4PH0A 2BUOA 4XFXA 2JO0A 4U0DA 2JYGA
chains in the Genus database with same CATH superfamily
2JU2A 3G4SP 4U0FA 1K73Q 2KWLA 2MF4A 3P05A 2ERHA 1BXIA 2KOOA 4H2WC 4XFYA 1KLPA 2FADA 1YHQP 2GZEA 3GKLC 3RG2A 1GXHA 1M74A 2PEMA 3CCUP 2L6EA 3DTJA 3CMAP 4U0EA 3Q20A 4M0IA 5F2NA 1W2BO 2XZ1C 2ROQA 2K2QA 3GJNA 2MVUA 2KW2A 2JYGA 3G29A 2DNWA 1K8AQ 2GZIA 5BS2A 2N5HA 1GPJA 2KGCA 2KG9A 1F80D 1CEIA 1D1DA 2K5XA 1EMVA 1X3OA 1Z6MA 2M8NA 1NJIQ 2VLQA 3CD6P 2L0QA 1YJ9P 2JYLA 2BHVA 1AUMA 3DS3A 3NY7B 2QNWA 5JPAA 2CNRA 4F37A 2WPTA 2KOPA 2LPKA 4PH0A 2GDYA 3GZMA 3CXCO 1T8KA 4XROA 2GZJA 1VQ5P 3G28A 1M90Q 5HGNA 4CA3A 3OW2O 2XV6A 1VKUA 2VLOA 3CPWO 2M5RA 1UNKA 1VQ4P 4H2YC 1Q7YQ 2PY8A 1L0HA 4QKOA 4UHPB 2AFDA 4XFXA 2L9FA 2CWOA 2K0DX 1A8OA 1QVFO 4XFZA 4U0BA 2JAZA 3HYBA 1YI2P 1RO0A 2XZ0D 4NEOA 1S72P 2N98A 2ONTA 1VQPP 2LIUA 2PNGA 2LF4A 3M1MA 3RG6C 4R0MA 3DS0A 5CZDB 2CG5B 3LMOA 1KC8Q 3CCEP 2PEOA 2GZFA 2JU1A 2CGQA 1IMPA 1KQSO 4PWVB 3CCSP 4COPA 1QVGO 1HQBA 2KG8A 4GR2A 3CCQP 1YITP 2N5IA 2FVEA 3G21A 4U0AA 4WYMA 3EJEA 2GDXA 1E0HA 3VRLC 3U43A 4U0CA 1GXGA 2FQ0A 4COCA 2QA4P 2JO0A 4U0DA 2GZGA 1HY8A 1UJZA 3EJBA 2X2BA 2XT1A 2K93A 4BPHA 2KORA 1VHNA 2EIAA 1AYIA 4MRTC 3H47A 3G71P 1VQ6P 2AF8A 2CQ8A 2EFJA 3E2DA 2K0YA 5KP7B 3CCLP 2GDWA 2EG5A 1VQOP 3G6EP 2FAEA 4IZ6A 1K9MQ 1EOQA 2FVAA 3I55P 5I4TG 1IMQA 2MVVA 2P9XA 2K0XA 1AF8A 2PEIA 2XXMA 2AVAA 2E1MA 1RNIA 3DS5A 4DG9A 1IUQA 3CCJP 3DPHA 1KD1Q 3CC4P 4PXHB 2M8LA 3CCVP 2DGYA 2Z44A 2L22A 3G1IA 3G0VA 2KGDA 1VQMP 1VQ7P 1L0IA 1NQ4A 1DV5A 3EJDA 7CEIA 1Q81Q 3B4QA 1VQKP 3NTEA 3DS2A 1OR5A 2AFEA 2JBGA 2QEXP 2FACA 2KOSA 4HKGA 2KG6A 1RO2A 2FVFA 1M6EX 3I56P 3CC7P 4QNBA 5F2KA 2PEKA 4BPFA 2LMLA 2K94A 3G26A 5HV8A 2JGPA 3LRYA 4H2XC 1YIJP 1ZMBA 2BUOA 2K92A 2N50A 3G1GA 2VLNA 1Q82Q 2VLPA 5KP6B 2VSQA 1N8RQ 5EW5E 2MD9A 1VQLP 5F2OA 2KGAA 5KP8B 2LTEA 1BAJA 2MY5A 1EIAA 2LL8A 2JQ4A 5EJDA 3H0DA 2KGEA 5DCKA 3GZLA 2L4BA 1JJ2O 2LOLA 5HVCA 1A43A 4BPGA 1E6JP 3WBHA 1FR2A 2FQ1A 3DS4A 1ACPA 2N6YA 3CCRP 1QRJA 2MR8A 1VQ9P 1MZ8A 2FHSC 2KOQA 2OTLP 2OTJP 1K30A 2EHSA 5HGOA 2LIWA 2KODA 4IPYA 2Z46A 3DS1A 3CMEP 2LKIA 2OARA 1YJNP 1ZNVA 1Q86Q 1M1KQ 3HZQA 3CC2P 2N6ZA 2KR5A 3H4EA 1VQ8P 5HGLA 2GYKA 4XRQA 2M8PA 2Z45A 2JB0A 1M6NA 3B5IA 2NO8A 1DNYA 5BS1A 2PENA 3MGEA 2PEJA 4PH1A 4GR6A 2EHTA 2FQ2A 3CE7A 2MR7A 5HGMA 1YJWP 1VQNP 3CCMP 2PEQA
chains in the Genus database with same CATH topology
1A8OA 3G4SP 2EG5A 1EIAA 1QVFO 4U0FA 1VQOP 4XFZA 3G6EP 1K73Q 4U0BA 3P05A 3H0DA 5DCKA 1K9MQ 4XFYA 1EOQA 4XFXA 5I4TG 3I55P 1JJ2O 3HYBA 1YI2P 2P9XA 1YHQP 1RO0A 1S72P 1A43A 2ONTA 1M74A 1VQPP 2PEIA 2XXMA 2PEMA 3CCUP 2L6EA 3DTJA 3CMAP 1E6JP 3Q20A 4M0IA 4U0EA 3WBHA 5F2NA 2E1MA 1W2BO 2LF4A 1RNIA 3DS5A 3M1MA 1IUQA 3RG6C 3G29A 2JYGA 3DS0A 3CCJP 3DPHA 3DS4A 1KD1Q 3CC4P 2M8LA 3CCRP 1QRJA 3CCVP 1K8AQ 1VQ9P 2DGYA 2Z44A 5BS2A 1KC8Q 3CCEP 2PEOA 3G1IA 2OTLP 2OTJP 3G0VA 1K30A 1VQMP 1VQ7P 1D1DA 5HGOA 2KODA 1KQSO 4IPYA 2Z46A 3CCSP 3DS1A 3CMEP 2M8NA 1Q81Q 4COPA 1QVGO 1VQKP 1NJIQ 3CD6P 2OARA 3NTEA 4GR2A 1YJNP 3CCQP 3DS2A 2QEXP 1Q86Q 1M1KQ 1YITP 3HZQA 1YJ9P 3G21A 3CC2P 1RO2A 3H4EA 4U0AA 4WYMA 2JYLA 1VQ8P 2BHVA 5HGLA 1M6EX 1AUMA 3I56P 3CC7P 3DS3A 4QNBA 5F2KA 4XRQA 3VRLC 2PEKA 5JPAA 2M8PA 2Z45A 1M6NA 4U0CA 3G26A 3B5IA 4PH0A 4COCA 3LRYA 1YIJP 1ZMBA 2QA4P 2BUOA 2JO0A 4U0DA 3CXCO 3G1GA 4XROA 5BS1A 2XT1A 1VQ5P 3G28A 1Q82Q 1M90Q 2PENA 5HGNA 3MGEA 2PEJA 2EIAA 3OW2O 4PH1A 2XV6A 1N8RQ 3H47A 3G71P 1VQLP 3CPWO 1VQ6P 4GR6A 5F2OA 2EFJA 3E2DA 5HGMA 1VQ4P 3CCLP 1Q7YQ 2PY8A 1YJWP 1VQNP 1BAJA 3CCMP 2PEQA 2CWOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DS0 A;  3G1G A;  3DS2 A;  3DPH A;  3DS4 A;  1A8O A;  1EIA A;  3NTE A;  2XT1 A;  4U0F A;  4XRO A;  2M8L A;  3G21 A;  3G28 A;  4XFZ A;  3H4E A;  1QRJ A;  4U0A A;  4U0B A;  4WYM A;  3MGE A;  3P05 A;  2JYL A;  5HGN A;  2EIA A;  4PH1 A;  2XV6 A;  5DCK A;  5HGL A;  4XFY A;  1EOQ A;  5I4T G;  1AUM A;  3G29 A;  3G1I A;  3H47 A;  3DS3 A;  3G0V A;  4QNB A;  3VRL C;  4XRQ A;  1A43 A;  2ONT A;  5JPA A;  5HGO A;  1D1D A;  2M8P A;  2KOD A;  2XXM A;  4IPY A;  2L6E A;  3DTJ A;  5HGM A;  4U0C A;  3G26 A;  1E6J P;  4M0I A;  4U0E A;  3DS1 A;  2LF4 A;  2M8N A;  4COP A;  3DS5 A;  1BAJ A;  3LRY A;  4COC A;  4PH0 A;  2BUO A;  4XFX A;  2JO0 A;  4U0D A;  2JYG A; 
#chains in the Genus database with same CATH topology
 2JU2 A;  3G4S P;  4U0F A;  1K73 Q;  2KWL A;  2MF4 A;  3P05 A;  2ERH A;  1BXI A;  2KOO A;  4H2W C;  4XFY A;  1KLP A;  2FAD A;  1YHQ P;  2GZE A;  3GKL C;  3RG2 A;  1GXH A;  1M74 A;  2PEM A;  3CCU P;  2L6E A;  3DTJ A;  3CMA P;  4U0E A;  3Q20 A;  4M0I A;  5F2N A;  1W2B O;  2XZ1 C;  2ROQ A;  2K2Q A;  3GJN A;  2MVU A;  2KW2 A;  2JYG A;  3G29 A;  2DNW A;  1K8A Q;  2GZI A;  5BS2 A;  2N5H A;  1GPJ A;  2KGC A;  2KG9 A;  1F80 D;  1CEI A;  1D1D A;  2K5X A;  1EMV A;  1X3O A;  1Z6M A;  2M8N A;  1NJI Q;  2VLQ A;  3CD6 P;  2L0Q A;  1YJ9 P;  2JYL A;  2BHV A;  1AUM A;  3DS3 A;  3NY7 B;  2QNW A;  5JPA A;  2CNR A;  4F37 A;  2WPT A;  2KOP A;  2LPK A;  4PH0 A;  2GDY A;  3GZM A;  3CXC O;  1T8K A;  4XRO A;  2GZJ A;  1VQ5 P;  3G28 A;  1M90 Q;  5HGN A;  4CA3 A;  3OW2 O;  2XV6 A;  1VKU A;  2VLO A;  3CPW O;  2M5R A;  1UNK A;  1VQ4 P;  4H2Y C;  1Q7Y Q;  2PY8 A;  1L0H A;  4QKO A;  4UHP B;  2AFD A;  4XFX A;  2L9F A;  2CWO A;  2K0D X;  1A8O A;  1QVF O;  4XFZ A;  4U0B A;  2JAZ A;  3HYB A;  1YI2 P;  1RO0 A;  2XZ0 D;  4NEO A;  1S72 P;  2N98 A;  2ONT A;  1VQP P;  2LIU A;  2PNG A;  2LF4 A;  3M1M A;  3RG6 C;  4R0M A;  3DS0 A;  5CZD B;  2CG5 B;  3LMO A;  1KC8 Q;  3CCE P;  2PEO A;  2GZF A;  2JU1 A;  2CGQ A;  1IMP A;  1KQS O;  4PWV B;  3CCS P;  4COP A;  1QVG O;  1HQB A;  2KG8 A;  4GR2 A;  3CCQ P;  1YIT P;  2N5I A;  2FVE A;  3G21 A;  4U0A A;  4WYM A;  3EJE A;  2GDX A;  1E0H A;  3VRL C;  3U43 A;  4U0C A;  1GXG A;  2FQ0 A;  4COC A;  2QA4 P;  2JO0 A;  4U0D A;  2GZG A;  1HY8 A;  1UJZ A;  3EJB A;  2X2B A;  2XT1 A;  2K93 A;  4BPH A;  2KOR A;  1VHN A;  2EIA A;  1AYI A;  4MRT C;  3H47 A;  3G71 P;  1VQ6 P;  2AF8 A;  2CQ8 A;  2EFJ A;  3E2D A;  2K0Y A;  5KP7 B;  3CCL P;  2GDW A;  2EG5 A;  1VQO P;  3G6E P;  2FAE A;  4IZ6 A;  1K9M Q;  1EOQ A;  2FVA A;  3I55 P;  5I4T G;  1IMQ A;  2MVV A;  2P9X A;  2K0X A;  1AF8 A;  2PEI A;  2XXM A;  2AVA A;  2E1M A;  1RNI A;  3DS5 A;  4DG9 A;  1IUQ A;  3CCJ P;  3DPH A;  1KD1 Q;  3CC4 P;  4PXH B;  2M8L A;  3CCV P;  2DGY A;  2Z44 A;  2L22 A;  3G1I A;  3G0V A;  2KGD A;  1VQM P;  1VQ7 P;  1L0I A;  1NQ4 A;  1DV5 A;  3EJD A;  7CEI A;  1Q81 Q;  3B4Q A;  1VQK P;  3NTE A;  3DS2 A;  1OR5 A;  2AFE A;  2JBG A;  2QEX P;  2FAC A;  2KOS A;  4HKG A;  2KG6 A;  1RO2 A;  2FVF A;  1M6E X;  3I56 P;  3CC7 P;  4QNB A;  5F2K A;  2PEK A;  4BPF A;  2LML A;  2K94 A;  3G26 A;  5HV8 A;  2JGP A;  3LRY A;  4H2X C;  1YIJ P;  1ZMB A;  2BUO A;  2K92 A;  2N50 A;  3G1G A;  2VLN A;  1Q82 Q;  2VLP A;  5KP6 B;  2VSQ A;  1N8R Q;  5EW5 E;  2MD9 A;  1VQL P;  5F2O A;  2KGA A;  5KP8 B;  2LTE A;  1BAJ A;  2MY5 A;  1EIA A;  2LL8 A;  2JQ4 A;  5EJD A;  3H0D A;  2KGE A;  5DCK A;  3GZL A;  2L4B A;  1JJ2 O;  2LOL A;  5HVC A;  1A43 A;  4BPG A;  1E6J P;  3WBH A;  1FR2 A;  2FQ1 A;  3DS4 A;  1ACP A;  2N6Y A;  3CCR P;  1QRJ A;  2MR8 A;  1VQ9 P;  1MZ8 A;  2FHS C;  2KOQ A;  2OTL P;  2OTJ P;  1K30 A;  2EHS A;  5HGO A;  2LIW A;  2KOD A;  4IPY A;  2Z46 A;  3DS1 A;  3CME P;  2LKI A;  2OAR A;  1YJN P;  1ZNV A;  1Q86 Q;  1M1K Q;  3HZQ A;  3CC2 P;  2N6Z A;  2KR5 A;  3H4E A;  1VQ8 P;  5HGL A;  2GYK A;  4XRQ A;  2M8P A;  2Z45 A;  2JB0 A;  1M6N A;  3B5I A;  2NO8 A;  1DNY A;  5BS1 A;  2PEN A;  3MGE A;  2PEJ A;  4PH1 A;  4GR6 A;  2EHT A;  2FQ2 A;  3CE7 A;  2MR7 A;  5HGM A;  1YJW P;  1VQN P;  3CCM P;  2PEQ A; 
#chains in the Genus database with same CATH homology
 1A8O A;  3G4S P;  2EG5 A;  1EIA A;  1QVF O;  4U0F A;  1VQO P;  4XFZ A;  3G6E P;  1K73 Q;  4U0B A;  3P05 A;  3H0D A;  5DCK A;  1K9M Q;  4XFY A;  1EOQ A;  4XFX A;  5I4T G;  3I55 P;  1JJ2 O;  3HYB A;  1YI2 P;  2P9X A;  1YHQ P;  1RO0 A;  1S72 P;  1A43 A;  2ONT A;  1M74 A;  1VQP P;  2PEI A;  2XXM A;  2PEM A;  3CCU P;  2L6E A;  3DTJ A;  3CMA P;  1E6J P;  3Q20 A;  4M0I A;  4U0E A;  3WBH A;  5F2N A;  2E1M A;  1W2B O;  2LF4 A;  1RNI A;  3DS5 A;  3M1M A;  1IUQ A;  3RG6 C;  3G29 A;  2JYG A;  3DS0 A;  3CCJ P;  3DPH A;  3DS4 A;  1KD1 Q;  3CC4 P;  2M8L A;  3CCR P;  1QRJ A;  3CCV P;  1K8A Q;  1VQ9 P;  2DGY A;  2Z44 A;  5BS2 A;  1KC8 Q;  3CCE P;  2PEO A;  3G1I A;  2OTL P;  2OTJ P;  3G0V A;  1K30 A;  1VQM P;  1VQ7 P;  1D1D A;  5HGO A;  2KOD A;  1KQS O;  4IPY A;  2Z46 A;  3CCS P;  3DS1 A;  3CME P;  2M8N A;  1Q81 Q;  4COP A;  1QVG O;  1VQK P;  1NJI Q;  3CD6 P;  2OAR A;  3NTE A;  4GR2 A;  1YJN P;  3CCQ P;  3DS2 A;  2QEX P;  1Q86 Q;  1M1K Q;  1YIT P;  3HZQ A;  1YJ9 P;  3G21 A;  3CC2 P;  1RO2 A;  3H4E A;  4U0A A;  4WYM A;  2JYL A;  1VQ8 P;  2BHV A;  5HGL A;  1M6E X;  1AUM A;  3I56 P;  3CC7 P;  3DS3 A;  4QNB A;  5F2K A;  4XRQ A;  3VRL C;  2PEK A;  5JPA A;  2M8P A;  2Z45 A;  1M6N A;  4U0C A;  3G26 A;  3B5I A;  4PH0 A;  4COC A;  3LRY A;  1YIJ P;  1ZMB A;  2QA4 P;  2BUO A;  2JO0 A;  4U0D A;  3CXC O;  3G1G A;  4XRO A;  5BS1 A;  2XT1 A;  1VQ5 P;  3G28 A;  1Q82 Q;  1M90 Q;  2PEN A;  5HGN A;  3MGE A;  2PEJ A;  2EIA A;  3OW2 O;  4PH1 A;  2XV6 A;  1N8R Q;  3H47 A;  3G71 P;  1VQL P;  3CPW O;  1VQ6 P;  4GR6 A;  5F2O A;  2EFJ A;  3E2D A;  5HGM A;  1VQ4 P;  3CCL P;  1Q7Y Q;  2PY8 A;  1YJW P;  1VQN P;  1BAJ A;  3CCM P;  2PEQ A;  2CWO A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.