1BXIA

Crystal structure of the escherichia coli colicin e9 dnase domain with its cognate immunity protein im9
Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
83
structure length
83
Chain Sequence
LKASISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVQQWRAANGKSGFKQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (12-24)O1 (25-27)EMPTYAH2 (30-44)TI1 (46-49)3H1 (7-9)AH4 (64-78)TII1 (57-60)AH3 (50-54)Updating...
connected with : NaN
molecule tags Immune system
source organism Escherichia coli
publication title Crystal Structure of the E.Coli Colicin E9 DNase Domain With its Cognate Immunity Protein Im9
pubmed rcsb
molecule keywords PROTEIN (COLICIN E9 IMMUNITY PROTEIN)
total genus 28
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 1998-10-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1bxiA00
2GZGA 1IMQA 1MZ8A 2VLPA 1BXIA 2WPTA 1E0HA 1FR2A 2JAZA 2GZFA 4F37A 3U43A 7CEIA 1IMPA 2VLOA 2JBGA 2VLQA 4QKOA 2JB0A 2GZIA 2NO8A 1ZNVA 3GJNA 2K5XA 2GZJA 2GYKA 3GKLC 1EMVA 2GZEA 1GXGA 1UJZA 2VLNA 1GXHA 4UHPB 5EW5E 1CEIA 1UNKA 2ERHA 2K0DX 1AYIA
chains in the Genus database with same CATH superfamily
2GZGA 1VQ6P 3CMEP 2OTLP 4F37A 2OARA 1DNYA 4PWVB 1Z6MA 4IPYA 2JB0A 3GZMA 3E2DA 4PXHB 2EHSA 2L4BA 2X2BA 2E1MA 2MF4A 3G1GA 5F2NA 2Z45A 2VLNA 3CCJP 3CCVP 5F2OA 5HGNA 2JYLA 3CCUP 2CGQA 3CMAP 2FQ2A 2FQ0A 4DG9A 2PEIA 3CCSP 2JYGA 3EJDA 4GR6A 5BS2A 3OW2O 2FVFA 2K5XA 2LL8A 2KOPA 4XFZA 1Q82Q 1M6EX 2EIAA 2K0YA 1M6NA 2VSQA 2ERHA 1VQ5P 2CWOA 2GDYA 1YIJP 3CC4P 3GJNA 1VQMP 3G0VA 1YJNP 1VQNP 1KQSO 1N8RQ 2N5HA 3CC2P 3M1MA 3H47A 3EJBA 1Q81Q 1VQLP 2KGEA 3U43A 1T8KA 2FHSC 2VLQA 1W2BO 3I55P 1DV5A 2Z44A 3CCRP 2AVAA 2MVVA 2KORA 2MVUA 4PH0A 3HZQA 3P05A 1BAJA 2L22A 2L6EA 2K2QA 3G6EP 3G71P 2KW2A 3H0DA 3CE7A 1YJWP 4XRQA 5HGMA 2KOSA 1ZMBA 2LIWA 2XXMA 3DS2A 5KP7B 1VQ8P 2ONTA 3CCQP 3B5IA 4IZ6A 2PY8A 3DS5A 3GKLC 3G21A 1EIAA 2KOQA 5EJDA 2EG5A 1M74A 1UJZA 3DTJA 4H2WC 5HGLA 4COCA 3MGEA 2PEQA 2XT1A 5F2KA 2MR7A 1X3OA 3DPHA 1BXIA 3CCLP 1AF8A 1NQ4A 3G29A 2VLOA 5HVCA 1VQ4P 1ZNVA 2AFDA 3DS4A 3CD6P 1EMVA 1HQBA 2GZEA 4U0DA 2FACA 2LTEA 4BPHA 4XROA 2N98A 5EW5E 3RG2A 3WBHA 2FVEA 2PEKA 2XZ0D 1FR2A 7CEIA 4XFYA 2M8NA 4U0AA 2AF8A 2GYKA 2N5IA 4U0EA 2JU2A 4H2XC 2CG5B 2P9XA 4WYMA 4QNBA 3NY7B 1VQPP 3G28A 1KC8Q 1OR5A 3RG6C 1K9MQ 2PEOA 2CQ8A 2LOLA 2QEXP 1AUMA 1D1DA 3G1IA 2MR8A 1GXHA 1QVFO 4GR2A 1MZ8A 3DS1A 1YITP 2KG8A 1IUQA 2N50A 3CC7P 1IMPA 2NO8A 2QA4P 2FAEA 2KGAA 2GZJA 2FVAA 4BPGA 1Q7YQ 1A43A 1RO2A 4BPFA 2XZ1C 4HKGA 1YHQP 2PEJA 2L9FA 5HV8A 1L0HA 2DNWA 5HGOA 2K0XA 2GDXA 4PH1A 3H4EA 5DCKA 3CXCO 1VQ7P 1K30A 1M90Q 2JGPA 2M8PA 2LF4A 1VQ9P 1CEIA 2KGCA 2LKIA 1VQOP 2LMLA 1VHNA 5CZDB 2FADA 3I56P 2Z46A 4M0IA 1QVGO 2KWLA 3HYBA 4U0FA 1F80D 1E6JP 2K92A 2WPTA 4COPA 1HY8A 2KODA 3LMOA 3DS3A 2DGYA 4CA3A 2EHTA 5BS1A 3EJEA 2N6ZA 2M5RA 2N6YA 2GDWA 2PEMA 3CCMP 1E0HA 4R0MA 1IMQA 3NTEA 2JAZA 1K8AQ 1EOQA 2KGDA 2LPKA 4QKOA 1NJIQ 1VQKP 1S72P 1ACPA 1RO0A 3CPWO 2PENA 2K93A 3VRLC 2KG9A 3G26A 2KR5A 5KP8B 3LRYA 3Q20A 2VLPA 1KLPA 1K73Q 3GZLA 4MRTC 1JJ2O 3CCEP 1A8OA 3DS0A 2MY5A 1Q86Q 5KP6B 2PNGA 1GXGA 4H2YC 2KG6A 2QNWA 2BUOA 2CNRA 1AYIA 4NEOA 2JU1A 1VKUA 2JQ4A 1RNIA 2GZFA 2JO0A 1KD1Q 1L0IA 2ROQA 4XFXA 2OTJP 2AFEA 2BHVA 3G4SP 2L0QA 2K0DX 1YJ9P 2M8LA 4U0BA 4U0CA 2MD9A 5I4TG 2FQ1A 1M1KQ 2JBGA 2GZIA 5JPAA 1YI2P 1QRJA 2LIUA 2EFJA 3B4QA 1GPJA 2XV6A 1UNKA 2K94A 4UHPB 2KOOA
chains in the Genus database with same CATH topology
2GZGA 1IMQA 1MZ8A 2VLPA 1BXIA 2WPTA 1E0HA 1FR2A 2JAZA 2GZFA 4F37A 3U43A 7CEIA 1IMPA 2VLOA 2JBGA 2VLQA 4QKOA 2JB0A 2GZIA 2NO8A 1ZNVA 3GJNA 2K5XA 2GZJA 2GYKA 3GKLC 1EMVA 2GZEA 1GXGA 1UJZA 2VLNA 1GXHA 4UHPB 5EW5E 1CEIA 1UNKA 2ERHA 2K0DX 1AYIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GZG A;  1IMQ A;  1MZ8 A;  2VLP A;  1BXI A;  2WPT A;  1E0H A;  1FR2 A;  2JAZ A;  2GZF A;  4F37 A;  3U43 A;  7CEI A;  1IMP A;  2VLO A;  2JBG A;  2VLQ A;  4QKO A;  2JB0 A;  2GZI A;  2NO8 A;  1ZNV A;  3GJN A;  2K5X A;  2GZJ A;  2GYK A;  3GKL C;  1EMV A;  2GZE A;  1GXG A;  1UJZ A;  2VLN A;  1GXH A;  4UHP B;  5EW5 E;  1CEI A;  1UNK A;  2ERH A;  2K0D X;  1AYI A; 
#chains in the Genus database with same CATH topology
 2GZG A;  1VQ6 P;  3CME P;  2OTL P;  4F37 A;  2OAR A;  1DNY A;  4PWV B;  1Z6M A;  4IPY A;  2JB0 A;  3GZM A;  3E2D A;  4PXH B;  2EHS A;  2L4B A;  2X2B A;  2E1M A;  2MF4 A;  3G1G A;  5F2N A;  2Z45 A;  2VLN A;  3CCJ P;  3CCV P;  5F2O A;  5HGN A;  2JYL A;  3CCU P;  2CGQ A;  3CMA P;  2FQ2 A;  2FQ0 A;  4DG9 A;  2PEI A;  3CCS P;  2JYG A;  3EJD A;  4GR6 A;  5BS2 A;  3OW2 O;  2FVF A;  2K5X A;  2LL8 A;  2KOP A;  4XFZ A;  1Q82 Q;  1M6E X;  2EIA A;  2K0Y A;  1M6N A;  2VSQ A;  2ERH A;  1VQ5 P;  2CWO A;  2GDY A;  1YIJ P;  3CC4 P;  3GJN A;  1VQM P;  3G0V A;  1YJN P;  1VQN P;  1KQS O;  1N8R Q;  2N5H A;  3CC2 P;  3M1M A;  3H47 A;  3EJB A;  1Q81 Q;  1VQL P;  2KGE A;  3U43 A;  1T8K A;  2FHS C;  2VLQ A;  1W2B O;  3I55 P;  1DV5 A;  2Z44 A;  3CCR P;  2AVA A;  2MVV A;  2KOR A;  2MVU A;  4PH0 A;  3HZQ A;  3P05 A;  1BAJ A;  2L22 A;  2L6E A;  2K2Q A;  3G6E P;  3G71 P;  2KW2 A;  3H0D A;  3CE7 A;  1YJW P;  4XRQ A;  5HGM A;  2KOS A;  1ZMB A;  2LIW A;  2XXM A;  3DS2 A;  5KP7 B;  1VQ8 P;  2ONT A;  3CCQ P;  3B5I A;  4IZ6 A;  2PY8 A;  3DS5 A;  3GKL C;  3G21 A;  1EIA A;  2KOQ A;  5EJD A;  2EG5 A;  1M74 A;  1UJZ A;  3DTJ A;  4H2W C;  5HGL A;  4COC A;  3MGE A;  2PEQ A;  2XT1 A;  5F2K A;  2MR7 A;  1X3O A;  3DPH A;  1BXI A;  3CCL P;  1AF8 A;  1NQ4 A;  3G29 A;  2VLO A;  5HVC A;  1VQ4 P;  1ZNV A;  2AFD A;  3DS4 A;  3CD6 P;  1EMV A;  1HQB A;  2GZE A;  4U0D A;  2FAC A;  2LTE A;  4BPH A;  4XRO A;  2N98 A;  5EW5 E;  3RG2 A;  3WBH A;  2FVE A;  2PEK A;  2XZ0 D;  1FR2 A;  7CEI A;  4XFY A;  2M8N A;  4U0A A;  2AF8 A;  2GYK A;  2N5I A;  4U0E A;  2JU2 A;  4H2X C;  2CG5 B;  2P9X A;  4WYM A;  4QNB A;  3NY7 B;  1VQP P;  3G28 A;  1KC8 Q;  1OR5 A;  3RG6 C;  1K9M Q;  2PEO A;  2CQ8 A;  2LOL A;  2QEX P;  1AUM A;  1D1D A;  3G1I A;  2MR8 A;  1GXH A;  1QVF O;  4GR2 A;  1MZ8 A;  3DS1 A;  1YIT P;  2KG8 A;  1IUQ A;  2N50 A;  3CC7 P;  1IMP A;  2NO8 A;  2QA4 P;  2FAE A;  2KGA A;  2GZJ A;  2FVA A;  4BPG A;  1Q7Y Q;  1A43 A;  1RO2 A;  4BPF A;  2XZ1 C;  4HKG A;  1YHQ P;  2PEJ A;  2L9F A;  5HV8 A;  1L0H A;  2DNW A;  5HGO A;  2K0X A;  2GDX A;  4PH1 A;  3H4E A;  5DCK A;  3CXC O;  1VQ7 P;  1K30 A;  1M90 Q;  2JGP A;  2M8P A;  2LF4 A;  1VQ9 P;  1CEI A;  2KGC A;  2LKI A;  1VQO P;  2LML A;  1VHN A;  5CZD B;  2FAD A;  3I56 P;  2Z46 A;  4M0I A;  1QVG O;  2KWL A;  3HYB A;  4U0F A;  1F80 D;  1E6J P;  2K92 A;  2WPT A;  4COP A;  1HY8 A;  2KOD A;  3LMO A;  3DS3 A;  2DGY A;  4CA3 A;  2EHT A;  5BS1 A;  3EJE A;  2N6Z A;  2M5R A;  2N6Y A;  2GDW A;  2PEM A;  3CCM P;  1E0H A;  4R0M A;  1IMQ A;  3NTE A;  2JAZ A;  1K8A Q;  1EOQ A;  2KGD A;  2LPK A;  4QKO A;  1NJI Q;  1VQK P;  1S72 P;  1ACP A;  1RO0 A;  3CPW O;  2PEN A;  2K93 A;  3VRL C;  2KG9 A;  3G26 A;  2KR5 A;  5KP8 B;  3LRY A;  3Q20 A;  2VLP A;  1KLP A;  1K73 Q;  3GZL A;  4MRT C;  1JJ2 O;  3CCE P;  1A8O A;  3DS0 A;  2MY5 A;  1Q86 Q;  5KP6 B;  2PNG A;  1GXG A;  4H2Y C;  2KG6 A;  2QNW A;  2BUO A;  2CNR A;  1AYI A;  4NEO A;  2JU1 A;  1VKU A;  2JQ4 A;  1RNI A;  2GZF A;  2JO0 A;  1KD1 Q;  1L0I A;  2ROQ A;  4XFX A;  2OTJ P;  2AFE A;  2BHV A;  3G4S P;  2L0Q A;  2K0D X;  1YJ9 P;  2M8L A;  4U0B A;  4U0C A;  2MD9 A;  5I4T G;  2FQ1 A;  1M1K Q;  2JBG A;  2GZI A;  5JPA A;  1YI2 P;  1QRJ A;  2LIU A;  2EFJ A;  3B4Q A;  1GPJ A;  2XV6 A;  1UNK A;  2K94 A;  4UHP B;  2KOO A; 
#chains in the Genus database with same CATH homology
 2GZG A;  1IMQ A;  1MZ8 A;  2VLP A;  1BXI A;  2WPT A;  1E0H A;  1FR2 A;  2JAZ A;  2GZF A;  4F37 A;  3U43 A;  7CEI A;  1IMP A;  2VLO A;  2JBG A;  2VLQ A;  4QKO A;  2JB0 A;  2GZI A;  2NO8 A;  1ZNV A;  3GJN A;  2K5X A;  2GZJ A;  2GYK A;  3GKL C;  1EMV A;  2GZE A;  1GXG A;  1UJZ A;  2VLN A;  1GXH A;  4UHP B;  5EW5 E;  1CEI A;  1UNK A;  2ERH A;  2K0D X;  1AYI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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