1DV5A

Tertiary structure of apo-d-alanyl carrier protein
Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
80
structure length
80
Chain Sequence
ADEAIKNGVLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQAQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV1 (21-24)TI1 (22-25)AH3 (70-79)TIV2 (23-26)TIV4 (30-33)TIV6 (35-38)3H1 (64-67)TIV5 (31-34)AH2 (40-49)EMPTYTIV7 (49-52)TI3 (51-54)TIV9 (59-62)AH1 (4-18)Updating...
connected with : NaN
molecule tags Transport protein
source organism Lactobacillus casei
publication title Biosynthesis of D-alanyl-lipoteichoic acid: the tertiary structure of apo-D-alanyl carrier protein.
pubmed doi rcsb
molecule keywords APO-D-ALANYL CARRIER PROTEIN
total genus 17
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2000-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 1dv5A00
2FVAA 1ACPA 2JU1A 2QNWA 3CE7A 3RG2A 2LMLA 2FHSC 2JU2A 2XZ0D 2CNRA 2LKIA 2AFEA 1HY8A 2K92A 2GDYA 2CGQA 2KWLA 2N5HA 2AVAA 2MY5A 2X2BA 2FQ1A 4CA3A 1HQBA 1NQ4A 2L0QA 1VKUA 2MR7A 2FADA 3NY7B 2N50A 2KOQA 1X3OA 5EJDA 4DG9A 2KG9A 2L22A 2KGDA 2KOSA 2JGPA 2N6ZA 2MF4A 2FACA 2KOOA 2DNWA 2EHSA 2LOLA 4H2YC 4BPGA 2K0YA 1F80D 1OR5A 2KOPA 2LIUA 3GZLA 2GDWA 2N6YA 2MD9A 2KGAA 2PNGA 4PWVB 4H2XC 2FAEA 4HKGA 5KP6B 2N5IA 2KR5A 2N98A 5KP7B 2KORA 2ROQA 2MVUA 5HVCA 2L9FA 1KLPA 5KP8B 1T8KA 4MRTC 4BPFA 2EHTA 3EJDA 2KGEA 2KW2A 2K94A 2FVEA 3GZMA 1DNYA 1DV5A 2GDXA 2M5RA 2FVFA 4NEOA 4H2WC 5HV8A 4IZ6A 2K0XA 2AF8A 2KG8A 1AF8A 2L4BA 2LL8A 2JQ4A 2CG5B 2KG6A 2K2QA 2LTEA 4BPHA 2K93A 2LIWA 2AFDA 3EJBA 2XZ1C 3LMOA 4R0MA 2FQ0A 1L0IA 5CZDB 2VSQA 4PXHB 2KGCA 2CQ8A 1L0HA 2MVVA 2FQ2A 3EJEA 2LPKA 2MR8A
chains in the Genus database with same CATH superfamily
3RG6C 3U43A 2QNWA 1K30A 2JU2A 5F2KA 2K92A 2GDYA 3Q20A 2E1MA 2JAZA 4U0DA 1BAJA 2EG5A 1M74A 4U0AA 2DGYA 1GXGA 2PEIA 1NQ4A 3CCUP 4PH1A 2K0DX 1IMQA 4WYMA 4M0IA 2L22A 1A8OA 2JYGA 2MF4A 2DNWA 1E0HA 1KQSO 3CC2P 3G6EP 3GJNA 1S72P 1QVFO 1RO0A 1QVGO 4H2XC 2FAEA 1VQ6P 2K5XA 3G21A 3P05A 5KP6B 3HYBA 2KR5A 1NJIQ 2ROQA 3MGEA 2L9FA 1Z6MA 5KP8B 2P9XA 4U0EA 3E2DA 4BPFA 2KGEA 5HGLA 2XT1A 3GZMA 1VQ9P 5BS1A 3NTEA 2LL8A 2JQ4A 1E6JP 1VQMP 1M6NA 2LIWA 3CCMP 2AFDA 3EJBA 3LMOA 2FQ0A 2BHVA 2VSQA 1W2BO 2CWOA 3OW2O 2QEXP 3CE7A 3M1MA 3DS2A 2CNRA 3G4SP 4U0CA 1HY8A 2JO0A 2CGQA 2JBGA 2N5HA 3DS5A 2AVAA 1KD1Q 2PY8A 4XFXA 3HZQA 1HQBA 5EW5E 3CCJP 1VHNA 1VQKP 2FADA 3G26A 1Q7YQ 1K8AQ 2XXMA 3CMAP 2PEJA 2KOQA 4DG9A 2KG9A 1UJZA 1YITP 4XFZA 1VQLP 2FACA 5BS2A 4XRQA 4BPGA 4H2YC 3G0VA 2K0YA 3CCQP 3GZLA 2KGAA 4IPYA 3CCSP 5F2OA 1ZMBA 1UNKA 4GR2A 3DS0A 1KLPA 4MRTC 1Q86Q 5F2NA 2K94A 2FVEA 2PEOA 1DNYA 3H4EA 1VQ8P 4NEOA 5HV8A 3WBHA 2EFJA 2K0XA 3B4QA 4BPHA 1IUQA 1JJ2O 2XZ1C 3G1IA 4PXHB 2KGCA 2CQ8A 5I4TG 1VQPP 2BUOA 2FVAA 1ACPA 2JYLA 3RG2A 2VLNA 2LMLA 4UHPB 3LRYA 5JPAA 2AFEA 2WPTA 2MY5A 3CC7P 3GKLC 4GR6A 2GYKA 3H0DA 5HGOA 7CEIA 2NO8A 3NY7B 1VQ5P 3DPHA 1X3OA 2ONTA 4U0BA 1KC8Q 4XROA 2N6ZA 2XV6A 2KOOA 2LOLA 4QKOA 1M6EX 1F80D 1OR5A 2KOPA 2LIUA 3B5IA 2GDWA 2N6YA 2MD9A 1EIAA 3DS1A 2PNGA 2GZEA 1VQOP 4U0FA 1VQ4P 3H47A 2N5IA 1YI2P 5KP7B 2KORA 2MVUA 1M1KQ 2KODA 1T8KA 2PEQA 4F37A 1EOQA 1GPJA 3CCRP 2KW2A 3CCLP 4XFYA 2GZGA 2VLPA 3G28A 3CCVP 1YIJP 1DV5A 3CC4P 1VQ7P 3DTJA 1MZ8A 1AF8A 2GZJA 2L4BA 3G1GA 2KG6A 2K2QA 1N8RQ 3G71P 2L6EA 2M8LA 5CZDB 2M8PA 3DS4A 4PH0A 3EJEA 2MVVA 4QNBA 2LPKA 1K73Q 2MR8A 2JU1A 2FHSC 2XZ0D 2Z44A 3CXCO 2LKIA 2KWLA 1D1DA 2VLQA 3I55P 1Q82Q 2X2BA 2FQ1A 4CA3A 1EMVA 2OARA 2PEKA 1ZNVA 2L0QA 3CD6P 3I56P 1VKUA 3G29A 2MR7A 1Q81Q 2N50A 5HGMA 5EJDA 2VLOA 1A43A 2ERHA 2JB0A 2KGDA 2KOSA 1CEIA 2JGPA 2OTJP 4COPA 1QRJA 3CMEP 2EHSA 1VQNP 2PEMA 2EIAA 5DCKA 4PWVB 1FR2A 1AUMA 4HKGA 1IMPA 2Z46A 1YHQP 2N98A 5HVCA 3VRLC 3CCEP 4COCA 1YJWP 2EHTA 3EJDA 2QA4P 2GZIA 1AYIA 2GDXA 2M5RA 2M8NA 2FVFA 1M90Q 4H2WC 4IZ6A 1RNIA 2PENA 1RO2A 3DS3A 2LF4A 2AF8A 2KG8A 1K9MQ 2Z45A 2CG5B 2LTEA 2K93A 1YJ9P 4R0MA 3CPWO 2GZFA 1GXHA 1L0IA 1YJNP 1BXIA 2OTLP 5HGNA 1L0HA 2FQ2A
chains in the Genus database with same CATH topology
2FVAA 1ACPA 2JU1A 2QNWA 3CE7A 3RG2A 2LMLA 2FHSC 2JU2A 2XZ0D 2CNRA 2LKIA 2AFEA 1HY8A 2K92A 2GDYA 2CGQA 2KWLA 2N5HA 2AVAA 2MY5A 2X2BA 2FQ1A 4CA3A 1HQBA 1NQ4A 2L0QA 1VKUA 2MR7A 2FADA 3NY7B 2N50A 2KOQA 1X3OA 5EJDA 4DG9A 2KG9A 2L22A 2KGDA 2KOSA 2JGPA 2N6ZA 2MF4A 2FACA 2KOOA 2DNWA 2EHSA 2LOLA 4H2YC 4BPGA 2K0YA 1F80D 1OR5A 2KOPA 2LIUA 3GZLA 2GDWA 2N6YA 2MD9A 2KGAA 2PNGA 4PWVB 4H2XC 2FAEA 4HKGA 5KP6B 2N5IA 2KR5A 2N98A 5KP7B 2KORA 2ROQA 2MVUA 5HVCA 2L9FA 1KLPA 5KP8B 1T8KA 4MRTC 4BPFA 2EHTA 3EJDA 2KGEA 2KW2A 2K94A 2FVEA 3GZMA 1DNYA 1DV5A 2GDXA 2M5RA 2FVFA 4NEOA 4H2WC 5HV8A 4IZ6A 2K0XA 2AF8A 2KG8A 1AF8A 2L4BA 2LL8A 2JQ4A 2CG5B 2KG6A 2K2QA 2LTEA 4BPHA 2K93A 2LIWA 2AFDA 3EJBA 2XZ1C 3LMOA 4R0MA 2FQ0A 1L0IA 5CZDB 2VSQA 4PXHB 2KGCA 2CQ8A 1L0HA 2MVVA 2FQ2A 3EJEA 2LPKA 2MR8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FVA A;  1ACP A;  2JU1 A;  2QNW A;  3CE7 A;  3RG2 A;  2LML A;  2FHS C;  2JU2 A;  2XZ0 D;  2CNR A;  2LKI A;  2AFE A;  1HY8 A;  2K92 A;  2GDY A;  2CGQ A;  2KWL A;  2N5H A;  2AVA A;  2MY5 A;  2X2B A;  2FQ1 A;  4CA3 A;  1HQB A;  1NQ4 A;  2L0Q A;  1VKU A;  2MR7 A;  2FAD A;  3NY7 B;  2N50 A;  2KOQ A;  1X3O A;  5EJD A;  4DG9 A;  2KG9 A;  2L22 A;  2KGD A;  2KOS A;  2JGP A;  2N6Z A;  2MF4 A;  2FAC A;  2KOO A;  2DNW A;  2EHS A;  2LOL A;  4H2Y C;  4BPG A;  2K0Y A;  1F80 D;  1OR5 A;  2KOP A;  2LIU A;  3GZL A;  2GDW A;  2N6Y A;  2MD9 A;  2KGA A;  2PNG A;  4PWV B;  4H2X C;  2FAE A;  4HKG A;  5KP6 B;  2N5I A;  2KR5 A;  2N98 A;  5KP7 B;  2KOR A;  2ROQ A;  2MVU A;  5HVC A;  2L9F A;  1KLP A;  5KP8 B;  1T8K A;  4MRT C;  4BPF A;  2EHT A;  3EJD A;  2KGE A;  2KW2 A;  2K94 A;  2FVE A;  3GZM A;  1DNY A;  1DV5 A;  2GDX A;  2M5R A;  2FVF A;  4NEO A;  4H2W C;  5HV8 A;  4IZ6 A;  2K0X A;  2AF8 A;  2KG8 A;  1AF8 A;  2L4B A;  2LL8 A;  2JQ4 A;  2CG5 B;  2KG6 A;  2K2Q A;  2LTE A;  4BPH A;  2K93 A;  2LIW A;  2AFD A;  3EJB A;  2XZ1 C;  3LMO A;  4R0M A;  2FQ0 A;  1L0I A;  5CZD B;  2VSQ A;  4PXH B;  2KGC A;  2CQ8 A;  1L0H A;  2MVV A;  2FQ2 A;  3EJE A;  2LPK A;  2MR8 A; 
#chains in the Genus database with same CATH topology
 3RG6 C;  3U43 A;  2QNW A;  1K30 A;  2JU2 A;  5F2K A;  2K92 A;  2GDY A;  3Q20 A;  2E1M A;  2JAZ A;  4U0D A;  1BAJ A;  2EG5 A;  1M74 A;  4U0A A;  2DGY A;  1GXG A;  2PEI A;  1NQ4 A;  3CCU P;  4PH1 A;  2K0D X;  1IMQ A;  4WYM A;  4M0I A;  2L22 A;  1A8O A;  2JYG A;  2MF4 A;  2DNW A;  1E0H A;  1KQS O;  3CC2 P;  3G6E P;  3GJN A;  1S72 P;  1QVF O;  1RO0 A;  1QVG O;  4H2X C;  2FAE A;  1VQ6 P;  2K5X A;  3G21 A;  3P05 A;  5KP6 B;  3HYB A;  2KR5 A;  1NJI Q;  2ROQ A;  3MGE A;  2L9F A;  1Z6M A;  5KP8 B;  2P9X A;  4U0E A;  3E2D A;  4BPF A;  2KGE A;  5HGL A;  2XT1 A;  3GZM A;  1VQ9 P;  5BS1 A;  3NTE A;  2LL8 A;  2JQ4 A;  1E6J P;  1VQM P;  1M6N A;  2LIW A;  3CCM P;  2AFD A;  3EJB A;  3LMO A;  2FQ0 A;  2BHV A;  2VSQ A;  1W2B O;  2CWO A;  3OW2 O;  2QEX P;  3CE7 A;  3M1M A;  3DS2 A;  2CNR A;  3G4S P;  4U0C A;  1HY8 A;  2JO0 A;  2CGQ A;  2JBG A;  2N5H A;  3DS5 A;  2AVA A;  1KD1 Q;  2PY8 A;  4XFX A;  3HZQ A;  1HQB A;  5EW5 E;  3CCJ P;  1VHN A;  1VQK P;  2FAD A;  3G26 A;  1Q7Y Q;  1K8A Q;  2XXM A;  3CMA P;  2PEJ A;  2KOQ A;  4DG9 A;  2KG9 A;  1UJZ A;  1YIT P;  4XFZ A;  1VQL P;  2FAC A;  5BS2 A;  4XRQ A;  4BPG A;  4H2Y C;  3G0V A;  2K0Y A;  3CCQ P;  3GZL A;  2KGA A;  4IPY A;  3CCS P;  5F2O A;  1ZMB A;  1UNK A;  4GR2 A;  3DS0 A;  1KLP A;  4MRT C;  1Q86 Q;  5F2N A;  2K94 A;  2FVE A;  2PEO A;  1DNY A;  3H4E A;  1VQ8 P;  4NEO A;  5HV8 A;  3WBH A;  2EFJ A;  2K0X A;  3B4Q A;  4BPH A;  1IUQ A;  1JJ2 O;  2XZ1 C;  3G1I A;  4PXH B;  2KGC A;  2CQ8 A;  5I4T G;  1VQP P;  2BUO A;  2FVA A;  1ACP A;  2JYL A;  3RG2 A;  2VLN A;  2LML A;  4UHP B;  3LRY A;  5JPA A;  2AFE A;  2WPT A;  2MY5 A;  3CC7 P;  3GKL C;  4GR6 A;  2GYK A;  3H0D A;  5HGO A;  7CEI A;  2NO8 A;  3NY7 B;  1VQ5 P;  3DPH A;  1X3O A;  2ONT A;  4U0B A;  1KC8 Q;  4XRO A;  2N6Z A;  2XV6 A;  2KOO A;  2LOL A;  4QKO A;  1M6E X;  1F80 D;  1OR5 A;  2KOP A;  2LIU A;  3B5I A;  2GDW A;  2N6Y A;  2MD9 A;  1EIA A;  3DS1 A;  2PNG A;  2GZE A;  1VQO P;  4U0F A;  1VQ4 P;  3H47 A;  2N5I A;  1YI2 P;  5KP7 B;  2KOR A;  2MVU A;  1M1K Q;  2KOD A;  1T8K A;  2PEQ A;  4F37 A;  1EOQ A;  1GPJ A;  3CCR P;  2KW2 A;  3CCL P;  4XFY A;  2GZG A;  2VLP A;  3G28 A;  3CCV P;  1YIJ P;  1DV5 A;  3CC4 P;  1VQ7 P;  3DTJ A;  1MZ8 A;  1AF8 A;  2GZJ A;  2L4B A;  3G1G A;  2KG6 A;  2K2Q A;  1N8R Q;  3G71 P;  2L6E A;  2M8L A;  5CZD B;  2M8P A;  3DS4 A;  4PH0 A;  3EJE A;  2MVV A;  4QNB A;  2LPK A;  1K73 Q;  2MR8 A;  2JU1 A;  2FHS C;  2XZ0 D;  2Z44 A;  3CXC O;  2LKI A;  2KWL A;  1D1D A;  2VLQ A;  3I55 P;  1Q82 Q;  2X2B A;  2FQ1 A;  4CA3 A;  1EMV A;  2OAR A;  2PEK A;  1ZNV A;  2L0Q A;  3CD6 P;  3I56 P;  1VKU A;  3G29 A;  2MR7 A;  1Q81 Q;  2N50 A;  5HGM A;  5EJD A;  2VLO A;  1A43 A;  2ERH A;  2JB0 A;  2KGD A;  2KOS A;  1CEI A;  2JGP A;  2OTJ P;  4COP A;  1QRJ A;  3CME P;  2EHS A;  1VQN P;  2PEM A;  2EIA A;  5DCK A;  4PWV B;  1FR2 A;  1AUM A;  4HKG A;  1IMP A;  2Z46 A;  1YHQ P;  2N98 A;  5HVC A;  3VRL C;  3CCE P;  4COC A;  1YJW P;  2EHT A;  3EJD A;  2QA4 P;  2GZI A;  1AYI A;  2GDX A;  2M5R A;  2M8N A;  2FVF A;  1M90 Q;  4H2W C;  4IZ6 A;  1RNI A;  2PEN A;  1RO2 A;  3DS3 A;  2LF4 A;  2AF8 A;  2KG8 A;  1K9M Q;  2Z45 A;  2CG5 B;  2LTE A;  2K93 A;  1YJ9 P;  4R0M A;  3CPW O;  2GZF A;  1GXH A;  1L0I A;  1YJN P;  1BXI A;  2OTL P;  5HGN A;  1L0H A;  2FQ2 A; 
#chains in the Genus database with same CATH homology
 2FVA A;  1ACP A;  2JU1 A;  2QNW A;  3CE7 A;  3RG2 A;  2LML A;  2FHS C;  2JU2 A;  2XZ0 D;  2CNR A;  2LKI A;  2AFE A;  1HY8 A;  2K92 A;  2GDY A;  2CGQ A;  2KWL A;  2N5H A;  2AVA A;  2MY5 A;  2X2B A;  2FQ1 A;  4CA3 A;  1HQB A;  1NQ4 A;  2L0Q A;  1VKU A;  2MR7 A;  2FAD A;  3NY7 B;  2N50 A;  2KOQ A;  1X3O A;  5EJD A;  4DG9 A;  2KG9 A;  2L22 A;  2KGD A;  2KOS A;  2JGP A;  2N6Z A;  2MF4 A;  2FAC A;  2KOO A;  2DNW A;  2EHS A;  2LOL A;  4H2Y C;  4BPG A;  2K0Y A;  1F80 D;  1OR5 A;  2KOP A;  2LIU A;  3GZL A;  2GDW A;  2N6Y A;  2MD9 A;  2KGA A;  2PNG A;  4PWV B;  4H2X C;  2FAE A;  4HKG A;  5KP6 B;  2N5I A;  2KR5 A;  2N98 A;  5KP7 B;  2KOR A;  2ROQ A;  2MVU A;  5HVC A;  2L9F A;  1KLP A;  5KP8 B;  1T8K A;  4MRT C;  4BPF A;  2EHT A;  3EJD A;  2KGE A;  2KW2 A;  2K94 A;  2FVE A;  3GZM A;  1DNY A;  1DV5 A;  2GDX A;  2M5R A;  2FVF A;  4NEO A;  4H2W C;  5HV8 A;  4IZ6 A;  2K0X A;  2AF8 A;  2KG8 A;  1AF8 A;  2L4B A;  2LL8 A;  2JQ4 A;  2CG5 B;  2KG6 A;  2K2Q A;  2LTE A;  4BPH A;  2K93 A;  2LIW A;  2AFD A;  3EJB A;  2XZ1 C;  3LMO A;  4R0M A;  2FQ0 A;  1L0I A;  5CZD B;  2VSQ A;  4PXH B;  2KGC A;  2CQ8 A;  1L0H A;  2MVV A;  2FQ2 A;  3EJE A;  2LPK A;  2MR8 A; 
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