1EOQ | Genus

Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	19
sequence length	77
structure length	77
Chain Sequence	MDIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTAP

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Viral protein
source organism	Rous sarcoma virus - prague c
publication title	Structure and self-association of the Rous sarcoma virus capsid protein. pubmed doi rcsb
molecule keywords	GAG POLYPROTEIN CAPSID PROTEIN P27
total genus	19
structure length	77
sequence length	77
ec nomenclature
pdb deposition date	2000-03-23

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1200.30	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A	1eoqA00

4IPYA 4XFZA 4XFYA 4U0BA 5HGLA 2JYGA 2XT1A 2JYLA 3H4EA 4U0FA 2KODA 5HGOA 3NTEA 3G28A 5HGNA 3G1IA 4COPA 3DS3A 4WYMA 4XRQA 3LRYA 2EIAA 3G26A 5DCKA 2L6EA 2XXMA 3DS2A 2M8LA 1EIAA 1D1DA 4XFXA 5HGMA 1A43A 3VRLC 5I4TG 3DTJA 3MGEA 4U0EA 4XROA 1A8OA 3P05A 2M8NA 4PH1A 2BUOA 1AUMA 1QRJA 5JPAA 2ONTA 4M0IA 3DS0A 4U0CA 3DS4A 3G1GA 3G0VA 4U0AA 4COCA 2XV6A 1EOQA 3G29A 4PH0A 3DS1A 1BAJA 3DS5A 2M8PA 3G21A 1E6JP 4QNBA 2JO0A 4U0DA 2LF4A 3H47A 3DPHA
chains in the Genus database with same CATH superfamily

4NEOA 1YJNP 2GDXA 1YJWP 2PEQA 2L0QA 1VQKP 1YITP 1RO0A 1D1DA 5HV8A 4H2WC 2LL8A 3E2DA 4MRTC 2BHVA 3CPWO 2K92A 2EFJA 2KODA 3NTEA 2FAEA 3EJDA 1VQ7P 2JU2A 2K0YA 1VQ9P 3MGEA 2GDYA 2KG8A 4PH1A 3G6EP 5CZDB 3Q20A 1DNYA 2NO8A 2MR8A 5KP6B 4U0AA 1GXHA 2KG9A 1VQMP 4XFYA 2MVUA 2XT1A 1VQ5P 2X2BA 3U43A 2K2QA 1BXIA 1X3OA 1IMQA 1T8KA 2KGCA 3G71P 3CD6P 3G29A 2PEIA 1BAJA 1M1KQ 2LF4A 2GZGA 4IZ6A 2KG6A 1YI2P 4CA3A 2KW2A 2QEXP 2ERHA 1A43A 3G4SP 1VQNP 1RO2A 1K8AQ 1UNKA 4M0IA 2PEOA 3G1GA 2GZFA 5F2NA 2VLOA 3H47A 2AF8A 1Q7YQ 1K9MQ 3CMEP 3NY7B 3DS3A 4WYMA 1N8RQ 3CCSP 1QVFO 2LIWA 2K93A 2KOOA 4GR2A 1AYIA 2GZIA 5BS1A 2OTJP 2JYLA 1KQSO 2K94A 2FVAA 3G1IA 3G26A 3B5IA 3LMOA 3GJNA 2K0XA 2MF4A 5KP8B 2M8NA 1M6NA 2LTEA 1QRJA 2FQ1A 2JBGA 3I56P 5F2OA 3WBHA 4PH0A 2KR5A 2EHSA 2KGDA 1VQLP 4XRQA 1F80D 1YHQP 3VRLC 2KGAA 1K30A 4BPGA 1JJ2O 1AUMA 2Z46A 1KD1Q 2L4BA 2PNGA 2JO0A 2Z44A 2DNWA 3CCLP 4U0BA 4U0FA 3CC7P 2CWOA 2KGEA 2AVAA 1YIJP 1ZMBA 1M74A 2FHSC 2OTLP 1Z6MA 5DCKA 2L6EA 2Z45A 3P05A 2VSQA 3DS1A 3DS5A 2M8PA 4QKOA 3GZLA 2CQ8A 2VLQA 2L22A 3CXCO 5EW5E 5KP7B 1Q81Q 3B4QA 2EIAA 1YJ9P 1NJIQ 1ACPA 3CCMP 5JPAA 2K5XA 2OARA 2N5HA 1EOQA 5HVCA 2XZ0D 5EJDA 3GZMA 2KORA 1W2BO 2JB0A 3HZQA 4R0MA 3LRYA 2KOPA 3DTJA 2EHTA 4UHPB 2AFEA 1IMPA 2BUOA 3DS4A 3CCRP 5F2KA 1OR5A 2XV6A 3HYBA 2CG5B 1E6JP 1VHNA 3H0DA 2VLNA 3CCJP 2LKIA 2GDWA 3M1MA 3RG6C 1KC8Q 4PXHB 2JGPA 3EJEA 1KLPA 2LMLA 3CE7A 3CCQP 2LPKA 2WPTA 2N98A 1L0IA 4DG9A 1VKUA 2N5IA 3G21A 4QNBA 1RNIA 4IPYA 2GZJA 2KWLA 4H2YC 2M8LA 2AFDA 1EIAA 2GYKA 2PEJA 4XROA 2DGYA 1E0HA 1IUQA 2JU1A 1NQ4A 2P9XA 3I55P 3EJBA 3RG2A 1AF8A 1DV5A 1L0HA 5HGLA 5HGOA 2FVFA 1HY8A 2N6ZA 5HGMA 3GKLC 4BPFA 3CCVP 5BS2A 2L9FA 2N50A 1M90Q 1UJZA 3CC2P 3G0VA 2GZEA 2QNWA 3CCUP 1K73Q 2CNRA 2PENA 4HKGA 4GR6A 4H2XC 2PEMA 2JAZA 5HGNA 2M5RA 2XXMA 1QVGO 1GPJA 4XFXA 5I4TG 4U0EA 2PY8A 1VQ6P 2VLPA 2ONTA 1Q86Q 3DS0A 2KOQA 2FADA 2MY5A 4U0DA 2FQ0A 1EMVA 2PEKA 1VQ8P 3DS2A 1GXGA 1Q82Q 2KOSA 3H4EA 2MR7A 2JQ4A 3G28A 2ROQA 1VQPP 4COPA 3CMAP 1ZNVA 2QA4P 4PWVB 2MD9A 1A8OA 2LOLA 3OW2O 2FACA 2EG5A 2XZ1C 4U0CA 2MVVA 4BPHA 7CEIA 4XFZA 2K0DX 2JYGA 2CGQA 2LIUA 1S72P 1VQOP 4F37A 1FR2A 2E1MA 1VQ4P 2FQ2A 2FVEA 1M6EX 1HQBA 1MZ8A 4COCA 2N6YA 3CCEP 3CC4P 1CEIA 3DPHA
chains in the Genus database with same CATH topology

5HGLA 1YJNP 5HGOA 1Q7YQ 1K9MQ 3CXCO 2PEQA 1YJWP 1VQKP 3CMEP 3DS3A 4WYMA 1Q81Q 2EIAA 1YJ9P 1YITP 1NJIQ 1RO0A 1D1DA 1N8RQ 3CCSP 5HGMA 1QVFO 3CCVP 3CCMP 5BS2A 5JPAA 3E2DA 1M90Q 3CC2P 2OARA 3G0VA 4GR2A 2BHVA 1EOQA 5BS1A 3CPWO 3CCUP 2EFJA 1K73Q 2PENA 2OTJP 4GR6A 2JYLA 2KODA 1KQSO 3NTEA 2PEMA 5HGNA 3G1IA 1W2BO 1VQ7P 3HZQA 3LRYA 3G26A 2XXMA 3B5IA 1QVGO 4XFXA 1VQ9P 5I4TG 3DTJA 3MGEA 4U0EA 2M8NA 2PY8A 1M6NA 4PH1A 3G6EP 1VQ6P 2BUOA 1QRJA 3Q20A 2ONTA 1Q86Q 3DS0A 3DS4A 3I56P 5F2KA 3CCRP 4U0AA 2XV6A 3HYBA 5F2OA 3WBHA 4PH0A 4U0DA 1E6JP 1VQMP 3H0DA 2PEKA 1VQ8P 3DS2A 3CCJP 1Q82Q 1VQLP 4XFYA 3H4EA 2XT1A 3M1MA 1VQ5P 3G28A 3RG6C 1KC8Q 1VQPP 4COPA 4XRQA 3CMAP 2QA4P 1YHQP 3VRLC 3CCQP 1A8OA 3OW2O 1K30A 2EG5A 1JJ2O 1AUMA 4U0CA 3G71P 3CD6P 2Z46A 3G29A 1KD1Q 2PEIA 1BAJA 1M1KQ 3G21A 4QNBA 2JO0A 2Z44A 2LF4A 1RNIA 3CCLP 4IPYA 4XFZA 4U0BA 2JYGA 4U0FA 3CC7P 2CWOA 1S72P 1YIJP 1YI2P 1ZMBA 1M74A 1VQOP 2OTLP 5DCKA 2M8LA 2L6EA 1EIAA 2Z45A 2QEXP 1A43A 2E1MA 2PEJA 3G4SP 1VQ4P 4XROA 3P05A 1M6EX 1VQNP 2DGYA 1IUQA 1RO2A 1K8AQ 4M0IA 2PEOA 3G1GA 4COCA 2P9XA 3I55P 3DS1A 3DS5A 5F2NA 3CCEP 2M8PA 3CC4P 3H47A 3DPHA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4IPY A;  4XFZ A;  4XFY A;  4U0B A;  5HGL A;  2JYG A;  2XT1 A;  2JYL A;  3H4E A;  4U0F A;  2KOD A;  5HGO A;  3NTE A;  3G28 A;  5HGN A;  3G1I A;  4COP A;  3DS3 A;  4WYM A;  4XRQ A;  3LRY A;  2EIA A;  3G26 A;  5DCK A;  2L6E A;  2XXM A;  3DS2 A;  2M8L A;  1EIA A;  1D1D A;  4XFX A;  5HGM A;  1A43 A;  3VRL C;  5I4T G;  3DTJ A;  3MGE A;  4U0E A;  4XRO A;  1A8O A;  3P05 A;  2M8N A;  4PH1 A;  2BUO A;  1AUM A;  1QRJ A;  5JPA A;  2ONT A;  4M0I A;  3DS0 A;  4U0C A;  3DS4 A;  3G1G A;  3G0V A;  4U0A A;  4COC A;  2XV6 A;  1EOQ A;  3G29 A;  4PH0 A;  3DS1 A;  1BAJ A;  3DS5 A;  2M8P A;  3G21 A;  1E6J P;  4QNB A;  2JO0 A;  4U0D A;  2LF4 A;  3H47 A;  3DPH A; 
#chains in the Genus database with same CATH topology
 4NEO A;  1YJN P;  2GDX A;  1YJW P;  2PEQ A;  2L0Q A;  1VQK P;  1YIT P;  1RO0 A;  1D1D A;  5HV8 A;  4H2W C;  2LL8 A;  3E2D A;  4MRT C;  2BHV A;  3CPW O;  2K92 A;  2EFJ A;  2KOD A;  3NTE A;  2FAE A;  3EJD A;  1VQ7 P;  2JU2 A;  2K0Y A;  1VQ9 P;  3MGE A;  2GDY A;  2KG8 A;  4PH1 A;  3G6E P;  5CZD B;  3Q20 A;  1DNY A;  2NO8 A;  2MR8 A;  5KP6 B;  4U0A A;  1GXH A;  2KG9 A;  1VQM P;  4XFY A;  2MVU A;  2XT1 A;  1VQ5 P;  2X2B A;  3U43 A;  2K2Q A;  1BXI A;  1X3O A;  1IMQ A;  1T8K A;  2KGC A;  3G71 P;  3CD6 P;  3G29 A;  2PEI A;  1BAJ A;  1M1K Q;  2LF4 A;  2GZG A;  4IZ6 A;  2KG6 A;  1YI2 P;  4CA3 A;  2KW2 A;  2QEX P;  2ERH A;  1A43 A;  3G4S P;  1VQN P;  1RO2 A;  1K8A Q;  1UNK A;  4M0I A;  2PEO A;  3G1G A;  2GZF A;  5F2N A;  2VLO A;  3H47 A;  2AF8 A;  1Q7Y Q;  1K9M Q;  3CME P;  3NY7 B;  3DS3 A;  4WYM A;  1N8R Q;  3CCS P;  1QVF O;  2LIW A;  2K93 A;  2KOO A;  4GR2 A;  1AYI A;  2GZI A;  5BS1 A;  2OTJ P;  2JYL A;  1KQS O;  2K94 A;  2FVA A;  3G1I A;  3G26 A;  3B5I A;  3LMO A;  3GJN A;  2K0X A;  2MF4 A;  5KP8 B;  2M8N A;  1M6N A;  2LTE A;  1QRJ A;  2FQ1 A;  2JBG A;  3I56 P;  5F2O A;  3WBH A;  4PH0 A;  2KR5 A;  2EHS A;  2KGD A;  1VQL P;  4XRQ A;  1F80 D;  1YHQ P;  3VRL C;  2KGA A;  1K30 A;  4BPG A;  1JJ2 O;  1AUM A;  2Z46 A;  1KD1 Q;  2L4B A;  2PNG A;  2JO0 A;  2Z44 A;  2DNW A;  3CCL P;  4U0B A;  4U0F A;  3CC7 P;  2CWO A;  2KGE A;  2AVA A;  1YIJ P;  1ZMB A;  1M74 A;  2FHS C;  2OTL P;  1Z6M A;  5DCK A;  2L6E A;  2Z45 A;  3P05 A;  2VSQ A;  3DS1 A;  3DS5 A;  2M8P A;  4QKO A;  3GZL A;  2CQ8 A;  2VLQ A;  2L22 A;  3CXC O;  5EW5 E;  5KP7 B;  1Q81 Q;  3B4Q A;  2EIA A;  1YJ9 P;  1NJI Q;  1ACP A;  3CCM P;  5JPA A;  2K5X A;  2OAR A;  2N5H A;  1EOQ A;  5HVC A;  2XZ0 D;  5EJD A;  3GZM A;  2KOR A;  1W2B O;  2JB0 A;  3HZQ A;  4R0M A;  3LRY A;  2KOP A;  3DTJ A;  2EHT A;  4UHP B;  2AFE A;  1IMP A;  2BUO A;  3DS4 A;  3CCR P;  5F2K A;  1OR5 A;  2XV6 A;  3HYB A;  2CG5 B;  1E6J P;  1VHN A;  3H0D A;  2VLN A;  3CCJ P;  2LKI A;  2GDW A;  3M1M A;  3RG6 C;  1KC8 Q;  4PXH B;  2JGP A;  3EJE A;  1KLP A;  2LML A;  3CE7 A;  3CCQ P;  2LPK A;  2WPT A;  2N98 A;  1L0I A;  4DG9 A;  1VKU A;  2N5I A;  3G21 A;  4QNB A;  1RNI A;  4IPY A;  2GZJ A;  2KWL A;  4H2Y C;  2M8L A;  2AFD A;  1EIA A;  2GYK A;  2PEJ A;  4XRO A;  2DGY A;  1E0H A;  1IUQ A;  2JU1 A;  1NQ4 A;  2P9X A;  3I55 P;  3EJB A;  3RG2 A;  1AF8 A;  1DV5 A;  1L0H A;  5HGL A;  5HGO A;  2FVF A;  1HY8 A;  2N6Z A;  5HGM A;  3GKL C;  4BPF A;  3CCV P;  5BS2 A;  2L9F A;  2N50 A;  1M90 Q;  1UJZ A;  3CC2 P;  3G0V A;  2GZE A;  2QNW A;  3CCU P;  1K73 Q;  2CNR A;  2PEN A;  4HKG A;  4GR6 A;  4H2X C;  2PEM A;  2JAZ A;  5HGN A;  2M5R A;  2XXM A;  1QVG O;  1GPJ A;  4XFX A;  5I4T G;  4U0E A;  2PY8 A;  1VQ6 P;  2VLP A;  2ONT A;  1Q86 Q;  3DS0 A;  2KOQ A;  2FAD A;  2MY5 A;  4U0D A;  2FQ0 A;  1EMV A;  2PEK A;  1VQ8 P;  3DS2 A;  1GXG A;  1Q82 Q;  2KOS A;  3H4E A;  2MR7 A;  2JQ4 A;  3G28 A;  2ROQ A;  1VQP P;  4COP A;  3CMA P;  1ZNV A;  2QA4 P;  4PWV B;  2MD9 A;  1A8O A;  2LOL A;  3OW2 O;  2FAC A;  2EG5 A;  2XZ1 C;  4U0C A;  2MVV A;  4BPH A;  7CEI A;  4XFZ A;  2K0D X;  2JYG A;  2CGQ A;  2LIU A;  1S72 P;  1VQO P;  4F37 A;  1FR2 A;  2E1M A;  1VQ4 P;  2FQ2 A;  2FVE A;  1M6E X;  1HQB A;  1MZ8 A;  4COC A;  2N6Y A;  3CCE P;  3CC4 P;  1CEI A;  3DPH A; 
#chains in the Genus database with same CATH homology
 5HGL A;  1YJN P;  5HGO A;  1Q7Y Q;  1K9M Q;  3CXC O;  2PEQ A;  1YJW P;  1VQK P;  3CME P;  3DS3 A;  4WYM A;  1Q81 Q;  2EIA A;  1YJ9 P;  1YIT P;  1NJI Q;  1RO0 A;  1D1D A;  1N8R Q;  3CCS P;  5HGM A;  1QVF O;  3CCV P;  3CCM P;  5BS2 A;  5JPA A;  3E2D A;  1M90 Q;  3CC2 P;  2OAR A;  3G0V A;  4GR2 A;  2BHV A;  1EOQ A;  5BS1 A;  3CPW O;  3CCU P;  2EFJ A;  1K73 Q;  2PEN A;  2OTJ P;  4GR6 A;  2JYL A;  2KOD A;  1KQS O;  3NTE A;  2PEM A;  5HGN A;  3G1I A;  1W2B O;  1VQ7 P;  3HZQ A;  3LRY A;  3G26 A;  2XXM A;  3B5I A;  1QVG O;  4XFX A;  1VQ9 P;  5I4T G;  3DTJ A;  3MGE A;  4U0E A;  2M8N A;  2PY8 A;  1M6N A;  4PH1 A;  3G6E P;  1VQ6 P;  2BUO A;  1QRJ A;  3Q20 A;  2ONT A;  1Q86 Q;  3DS0 A;  3DS4 A;  3I56 P;  5F2K A;  3CCR P;  4U0A A;  2XV6 A;  3HYB A;  5F2O A;  3WBH A;  4PH0 A;  4U0D A;  1E6J P;  1VQM P;  3H0D A;  2PEK A;  1VQ8 P;  3DS2 A;  3CCJ P;  1Q82 Q;  1VQL P;  4XFY A;  3H4E A;  2XT1 A;  3M1M A;  1VQ5 P;  3G28 A;  3RG6 C;  1KC8 Q;  1VQP P;  4COP A;  4XRQ A;  3CMA P;  2QA4 P;  1YHQ P;  3VRL C;  3CCQ P;  1A8O A;  3OW2 O;  1K30 A;  2EG5 A;  1JJ2 O;  1AUM A;  4U0C A;  3G71 P;  3CD6 P;  2Z46 A;  3G29 A;  1KD1 Q;  2PEI A;  1BAJ A;  1M1K Q;  3G21 A;  4QNB A;  2JO0 A;  2Z44 A;  2LF4 A;  1RNI A;  3CCL P;  4IPY A;  4XFZ A;  4U0B A;  2JYG A;  4U0F A;  3CC7 P;  2CWO A;  1S72 P;  1YIJ P;  1YI2 P;  1ZMB A;  1M74 A;  1VQO P;  2OTL P;  5DCK A;  2M8L A;  2L6E A;  1EIA A;  2Z45 A;  2QEX P;  1A43 A;  2E1M A;  2PEJ A;  3G4S P;  1VQ4 P;  4XRO A;  3P05 A;  1M6E X;  1VQN P;  2DGY A;  1IUQ A;  1RO2 A;  1K8A Q;  4M0I A;  2PEO A;  3G1G A;  4COC A;  2P9X A;  3I55 P;  3DS1 A;  3DS5 A;  5F2N A;  3CCE P;  2M8P A;  3CC4 P;  3H47 A;  3DPH A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1EOQA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization