2DNW | Genus

Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	18
sequence length	99
structure length	99
Chain Sequence	GSSGSSGMPPLTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYESGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
source organism	Homo sapiens
publication title	Solution structure of RSGI RUH-059, an ACP domain of acyl carrier protein, mitochondrial [Precursor] from human cDNA rcsb
molecule keywords	Acyl carrier protein
total genus	18
structure length	99
sequence length	99
ec nomenclature
pdb deposition date	2006-04-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00550	PP-binding	Phosphopantetheine attachment site

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1200.10	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A	ACP-like	2dnwA00

1HQBA 2KG6A 4IZ6A 1NQ4A 2JU2A 2FQ0A 3CE7A 3EJDA 2LTEA 3EJEA 1OR5A 2N50A 1AF8A 2KGDA 2MY5A 2XZ1C 2N6YA 2CG5B 1L0IA 2LL8A 4R0MA 4CA3A 2FADA 2N6ZA 4HKGA 2CGQA 2K2QA 2LIWA 2FVAA 2LPKA 1F80D 3NY7B 1L0HA 2VSQA 2MR7A 2K94A 2PNGA 1DNYA 2L22A 4H2XC 4DG9A 3EJBA 2AVAA 4BPGA 2KGAA 2DNWA 2ROQA 1ACPA 2N98A 2AF8A 4H2WC 2K0YA 2K93A 4NEOA 5HV8A 4BPHA 2KG8A 2MVVA 2LOLA 2L4BA 2LMLA 1X3OA 2GDYA 4MRTC 2FVFA 3LMOA 5CZDB 2K0XA 2KW2A 2L9FA 4BPFA 3GZLA 2CQ8A 2FHSC 5KP6B 2JGPA 3GZMA 2FAEA 2KWLA 2KORA 2CNRA 2M5RA 2KOSA 2MF4A 1VKUA 2N5HA 2MD9A 2QNWA 5KP8B 3RG2A 2K92A 2KR5A 2AFEA 2KGCA 2KOPA 2EHSA 2KG9A 4H2YC 2KOOA 2KOQA 1KLPA 2AFDA 2JQ4A 2GDWA 2JU1A 5HVCA 2FACA 2LKIA 1T8KA 2KGEA 2EHTA 2GDXA 4PXHB 2L0QA 2FVEA 2XZ0D 4PWVB 2MR8A 2MVUA 2LIUA 1DV5A 2X2BA 2N5IA 5KP7B 2FQ1A 5EJDA 1HY8A 2FQ2A
chains in the Genus database with same CATH superfamily

1VQOP 4IZ6A 3CE7A 2M8PA 3EJDA 3G0VA 1M6NA 1KQSO 2FADA 2LF4A 1YIJP 1KC8Q 2K2QA 2PEIA 1D1DA 2FVAA 1F80D 3G29A 3WBHA 1L0HA 2VSQA 3CC4P 4U0BA 1GXHA 1W2BO 1VQ8P 2M8LA 3CCUP 3EJBA 2DNWA 2ROQA 2XXMA 4H2WC 2KG8A 5I4TG 2LOLA 1X3OA 7CEIA 2CQ8A 2L6EA 2KOSA 1VKUA 2ONTA 1M90Q 1E0HA 1VQKP 4QNBA 2EHSA 2VLNA 1KLPA 2AFDA 1A43A 3P05A 1BXIA 2JU1A 5HVCA 1MZ8A 2KODA 2GDXA 1M74A 2EFJA 3H4EA 2GZIA 2LIUA 1Q86Q 3M1MA 2ERHA 2FQ1A 2CWOA 2PEMA 2KG6A 1EOQA 1VQLP 2FQ0A 4XFZA 2N50A 3G26A 1AF8A 1CEIA 2KGDA 2XZ1C 2GZGA 3GJNA 3OW2O 2JBGA 2N6YA 3CPWO 2GYKA 3CMEP 2LIWA 1NJIQ 2PEQA 1YHQP 2OTLP 3B5IA 4UHPB 3G1IA 2K94A 1N8RQ 1VQ7P 1DNYA 1JJ2O 4WYMA 3DS4A 4H2XC 4DG9A 4BPGA 2K5XA 3U43A 4XRQA 2N98A 3I56P 3G71P 1VQPP 2K0DX 2MVVA 2LMLA 2NO8A 4U0DA 5HGMA 2FVFA 5CZDB 2K0XA 1VQNP 3LRYA 3H0DA 1KD1Q 4QKOA 2GZJA 2JYGA 2M5RA 2Z46A 1A8OA 3I55P 2N5HA 3RG2A 1YJWP 2GZFA 3G6EP 2JAZA 2KOQA 1VQ9P 2JQ4A 2EIAA 1AUMA 2GDWA 2FACA 1S72P 2L0QA 2E1MA 3CCSP 2MVUA 5EJDA 3CCEP 1RO2A 1HY8A 3B4QA 5F2OA 4XROA 1GPJA 1NQ4A 4U0FA 3DS3A 3DS2A 2LTEA 5BS1A 3EJEA 3G28A 3CMAP 5F2KA 1UNKA 4U0EA 2M8NA 1L0IA 2LL8A 4R0MA 1EIAA 1YJNP 3DS5A 2N6ZA 2CGQA 1ZNVA 2LPKA 3E2DA 1UJZA 3CCMP 1VQ4P 2JB0A 2MR7A 2EG5A 2L22A 2AVAA 2WPTA 2KGAA 2PEJA 1ACPA 2AF8A 4NEOA 3DTJA 4BPHA 4COCA 3Q20A 3DS0A 2VLOA 1M6EX 2GDYA 4MRTC 3LMOA 4PH1A 4BPFA 4IPYA 2JGPA 1Q81Q 3CCVP 2KWLA 3VRLC 2MF4A 1RNIA 2MD9A 2VLQA 3G4SP 3CCLP 3HZQA 3DPHA 2KOPA 2GZEA 1M1KQ 2QA4P 5JPAA 1QVGO 1T8KA 2KGEA 1Q7YQ 5F2NA 2BHVA 2XZ0D 2MR8A 4M0IA 5BS2A 2X2BA 3HYBA 4U0CA 2N5IA 5KP7B 3CD6P 5EW5E 1HQBA 3G1GA 2JU2A 2VLPA 1OR5A 2DGYA 2MY5A 4U0AA 1RO0A 2PEOA 2CG5B 1K8AQ 1QRJA 4CA3A 4HKGA 2JYLA 4PH0A 1GXGA 1ZMBA 5DCKA 3CCRP 3NY7B 1YJ9P 3CC2P 4XFYA 1K30A 1IMPA 2BUOA 2JO0A 4F37A 2PNGA 3CCJP 5HGNA 1YI2P 1K9MQ 4COPA 4GR2A 3CXCO 1FR2A 2OARA 5HGOA 3MGEA 2K0YA 2K93A 1IMQA 2XV6A 1IUQA 5HV8A 1VQMP 1AYIA 3DS1A 2L4BA 1Z6MA 2PENA 1EMVA 2Z44A 2KW2A 2L9FA 3GZLA 2FHSC 5KP6B 3GZMA 2OTJP 2FAEA 3G21A 2QEXP 1QVFO 2XT1A 2KORA 2CNRA 2Z45A 2PY8A 2PEKA 1VQ6P 1E6JP 2QNWA 5KP8B 1VQ5P 2K92A 1VHNA 3RG6C 3CCQP 3NTEA 2KR5A 2AFEA 2KGCA 3CC7P 2KG9A 4H2YC 2KOOA 5HGLA 3GKLC 1YITP 2LKIA 1K73Q 2EHTA 2P9XA 4PXHB 2FVEA 4PWVB 4XFXA 1BAJA 1DV5A 3H47A 4GR6A 1Q82Q 2FQ2A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1HQB A;  2KG6 A;  4IZ6 A;  1NQ4 A;  2JU2 A;  2FQ0 A;  3CE7 A;  3EJD A;  2LTE A;  3EJE A;  1OR5 A;  2N50 A;  1AF8 A;  2KGD A;  2MY5 A;  2XZ1 C;  2N6Y A;  2CG5 B;  1L0I A;  2LL8 A;  4R0M A;  4CA3 A;  2FAD A;  2N6Z A;  4HKG A;  2CGQ A;  2K2Q A;  2LIW A;  2FVA A;  2LPK A;  1F80 D;  3NY7 B;  1L0H A;  2VSQ A;  2MR7 A;  2K94 A;  2PNG A;  1DNY A;  2L22 A;  4H2X C;  4DG9 A;  3EJB A;  2AVA A;  4BPG A;  2KGA A;  2DNW A;  2ROQ A;  1ACP A;  2N98 A;  2AF8 A;  4H2W C;  2K0Y A;  2K93 A;  4NEO A;  5HV8 A;  4BPH A;  2KG8 A;  2MVV A;  2LOL A;  2L4B A;  2LML A;  1X3O A;  2GDY A;  4MRT C;  2FVF A;  3LMO A;  5CZD B;  2K0X A;  2KW2 A;  2L9F A;  4BPF A;  3GZL A;  2CQ8 A;  2FHS C;  5KP6 B;  2JGP A;  3GZM A;  2FAE A;  2KWL A;  2KOR A;  2CNR A;  2M5R A;  2KOS A;  2MF4 A;  1VKU A;  2N5H A;  2MD9 A;  2QNW A;  5KP8 B;  3RG2 A;  2K92 A;  2KR5 A;  2AFE A;  2KGC A;  2KOP A;  2EHS A;  2KG9 A;  4H2Y C;  2KOO A;  2KOQ A;  1KLP A;  2AFD A;  2JQ4 A;  2GDW A;  2JU1 A;  5HVC A;  2FAC A;  2LKI A;  1T8K A;  2KGE A;  2EHT A;  2GDX A;  4PXH B;  2L0Q A;  2FVE A;  2XZ0 D;  4PWV B;  2MR8 A;  2MVU A;  2LIU A;  1DV5 A;  2X2B A;  2N5I A;  5KP7 B;  2FQ1 A;  5EJD A;  1HY8 A;  2FQ2 A; 
#chains in the Genus database with same CATH topology
 1VQO P;  4IZ6 A;  3CE7 A;  2M8P A;  3EJD A;  3G0V A;  1M6N A;  1KQS O;  2FAD A;  2LF4 A;  1YIJ P;  1KC8 Q;  2K2Q A;  2PEI A;  1D1D A;  2FVA A;  1F80 D;  3G29 A;  3WBH A;  1L0H A;  2VSQ A;  3CC4 P;  4U0B A;  1GXH A;  1W2B O;  1VQ8 P;  2M8L A;  3CCU P;  3EJB A;  2DNW A;  2ROQ A;  2XXM A;  4H2W C;  2KG8 A;  5I4T G;  2LOL A;  1X3O A;  7CEI A;  2CQ8 A;  2L6E A;  2KOS A;  1VKU A;  2ONT A;  1M90 Q;  1E0H A;  1VQK P;  4QNB A;  2EHS A;  2VLN A;  1KLP A;  2AFD A;  1A43 A;  3P05 A;  1BXI A;  2JU1 A;  5HVC A;  1MZ8 A;  2KOD A;  2GDX A;  1M74 A;  2EFJ A;  3H4E A;  2GZI A;  2LIU A;  1Q86 Q;  3M1M A;  2ERH A;  2FQ1 A;  2CWO A;  2PEM A;  2KG6 A;  1EOQ A;  1VQL P;  2FQ0 A;  4XFZ A;  2N50 A;  3G26 A;  1AF8 A;  1CEI A;  2KGD A;  2XZ1 C;  2GZG A;  3GJN A;  3OW2 O;  2JBG A;  2N6Y A;  3CPW O;  2GYK A;  3CME P;  2LIW A;  1NJI Q;  2PEQ A;  1YHQ P;  2OTL P;  3B5I A;  4UHP B;  3G1I A;  2K94 A;  1N8R Q;  1VQ7 P;  1DNY A;  1JJ2 O;  4WYM A;  3DS4 A;  4H2X C;  4DG9 A;  4BPG A;  2K5X A;  3U43 A;  4XRQ A;  2N98 A;  3I56 P;  3G71 P;  1VQP P;  2K0D X;  2MVV A;  2LML A;  2NO8 A;  4U0D A;  5HGM A;  2FVF A;  5CZD B;  2K0X A;  1VQN P;  3LRY A;  3H0D A;  1KD1 Q;  4QKO A;  2GZJ A;  2JYG A;  2M5R A;  2Z46 A;  1A8O A;  3I55 P;  2N5H A;  3RG2 A;  1YJW P;  2GZF A;  3G6E P;  2JAZ A;  2KOQ A;  1VQ9 P;  2JQ4 A;  2EIA A;  1AUM A;  2GDW A;  2FAC A;  1S72 P;  2L0Q A;  2E1M A;  3CCS P;  2MVU A;  5EJD A;  3CCE P;  1RO2 A;  1HY8 A;  3B4Q A;  5F2O A;  4XRO A;  1GPJ A;  1NQ4 A;  4U0F A;  3DS3 A;  3DS2 A;  2LTE A;  5BS1 A;  3EJE A;  3G28 A;  3CMA P;  5F2K A;  1UNK A;  4U0E A;  2M8N A;  1L0I A;  2LL8 A;  4R0M A;  1EIA A;  1YJN P;  3DS5 A;  2N6Z A;  2CGQ A;  1ZNV A;  2LPK A;  3E2D A;  1UJZ A;  3CCM P;  1VQ4 P;  2JB0 A;  2MR7 A;  2EG5 A;  2L22 A;  2AVA A;  2WPT A;  2KGA A;  2PEJ A;  1ACP A;  2AF8 A;  4NEO A;  3DTJ A;  4BPH A;  4COC A;  3Q20 A;  3DS0 A;  2VLO A;  1M6E X;  2GDY A;  4MRT C;  3LMO A;  4PH1 A;  4BPF A;  4IPY A;  2JGP A;  1Q81 Q;  3CCV P;  2KWL A;  3VRL C;  2MF4 A;  1RNI A;  2MD9 A;  2VLQ A;  3G4S P;  3CCL P;  3HZQ A;  3DPH A;  2KOP A;  2GZE A;  1M1K Q;  2QA4 P;  5JPA A;  1QVG O;  1T8K A;  2KGE A;  1Q7Y Q;  5F2N A;  2BHV A;  2XZ0 D;  2MR8 A;  4M0I A;  5BS2 A;  2X2B A;  3HYB A;  4U0C A;  2N5I A;  5KP7 B;  3CD6 P;  5EW5 E;  1HQB A;  3G1G A;  2JU2 A;  2VLP A;  1OR5 A;  2DGY A;  2MY5 A;  4U0A A;  1RO0 A;  2PEO A;  2CG5 B;  1K8A Q;  1QRJ A;  4CA3 A;  4HKG A;  2JYL A;  4PH0 A;  1GXG A;  1ZMB A;  5DCK A;  3CCR P;  3NY7 B;  1YJ9 P;  3CC2 P;  4XFY A;  1K30 A;  1IMP A;  2BUO A;  2JO0 A;  4F37 A;  2PNG A;  3CCJ P;  5HGN A;  1YI2 P;  1K9M Q;  4COP A;  4GR2 A;  3CXC O;  1FR2 A;  2OAR A;  5HGO A;  3MGE A;  2K0Y A;  2K93 A;  1IMQ A;  2XV6 A;  1IUQ A;  5HV8 A;  1VQM P;  1AYI A;  3DS1 A;  2L4B A;  1Z6M A;  2PEN A;  1EMV A;  2Z44 A;  2KW2 A;  2L9F A;  3GZL A;  2FHS C;  5KP6 B;  3GZM A;  2OTJ P;  2FAE A;  3G21 A;  2QEX P;  1QVF O;  2XT1 A;  2KOR A;  2CNR A;  2Z45 A;  2PY8 A;  2PEK A;  1VQ6 P;  1E6J P;  2QNW A;  5KP8 B;  1VQ5 P;  2K92 A;  1VHN A;  3RG6 C;  3CCQ P;  3NTE A;  2KR5 A;  2AFE A;  2KGC A;  3CC7 P;  2KG9 A;  4H2Y C;  2KOO A;  5HGL A;  3GKL C;  1YIT P;  2LKI A;  1K73 Q;  2EHT A;  2P9X A;  4PXH B;  2FVE A;  4PWV B;  4XFX A;  1BAJ A;  1DV5 A;  3H47 A;  4GR6 A;  1Q82 Q;  2FQ2 A; 
#chains in the Genus database with same CATH homology
 1HQB A;  2KG6 A;  4IZ6 A;  1NQ4 A;  2JU2 A;  2FQ0 A;  3CE7 A;  3EJD A;  2LTE A;  3EJE A;  1OR5 A;  2N50 A;  1AF8 A;  2KGD A;  2MY5 A;  2XZ1 C;  2N6Y A;  2CG5 B;  1L0I A;  2LL8 A;  4R0M A;  4CA3 A;  2FAD A;  2N6Z A;  4HKG A;  2CGQ A;  2K2Q A;  2LIW A;  2FVA A;  2LPK A;  1F80 D;  3NY7 B;  1L0H A;  2VSQ A;  2MR7 A;  2K94 A;  2PNG A;  1DNY A;  2L22 A;  4H2X C;  4DG9 A;  3EJB A;  2AVA A;  4BPG A;  2KGA A;  2DNW A;  2ROQ A;  1ACP A;  2N98 A;  2AF8 A;  4H2W C;  2K0Y A;  2K93 A;  4NEO A;  5HV8 A;  4BPH A;  2KG8 A;  2MVV A;  2LOL A;  2L4B A;  2LML A;  1X3O A;  2GDY A;  4MRT C;  2FVF A;  3LMO A;  5CZD B;  2K0X A;  2KW2 A;  2L9F A;  4BPF A;  3GZL A;  2CQ8 A;  2FHS C;  5KP6 B;  2JGP A;  3GZM A;  2FAE A;  2KWL A;  2KOR A;  2CNR A;  2M5R A;  2KOS A;  2MF4 A;  1VKU A;  2N5H A;  2MD9 A;  2QNW A;  5KP8 B;  3RG2 A;  2K92 A;  2KR5 A;  2AFE A;  2KGC A;  2KOP A;  2EHS A;  2KG9 A;  4H2Y C;  2KOO A;  2KOQ A;  1KLP A;  2AFD A;  2JQ4 A;  2GDW A;  2JU1 A;  5HVC A;  2FAC A;  2LKI A;  1T8K A;  2KGE A;  2EHT A;  2GDX A;  4PXH B;  2L0Q A;  2FVE A;  2XZ0 D;  4PWV B;  2MR8 A;  2MVU A;  2LIU A;  1DV5 A;  2X2B A;  2N5I A;  5KP7 B;  2FQ1 A;  5EJD A;  1HY8 A;  2FQ2 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2DNWA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations