2FVA | Genus

Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	14
sequence length	82
structure length	82
Chain Sequence	AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIEGLLEKKA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Biosynthetic protein
source organism	Spinacia oleracea
publication title	Solution structures of spinach acyl carrier protein with decanoate and stearate pubmed doi rcsb
molecule keywords	Acyl Carrier Protein
total genus	14
structure length	82
sequence length	82
ec nomenclature
pdb deposition date	2006-01-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00550	PP-binding	Phosphopantetheine attachment site

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1200.10	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A	ACP-like	2fvaA00

3LMOA 2KORA 3NY7B 1AF8A 4H2WC 2JU2A 2K0YA 4BPFA 5HV8A 1NQ4A 2EHTA 2FAEA 3GZMA 2KGAA 1F80D 2FQ1A 2JQ4A 2KWLA 1DV5A 2FACA 2N6YA 2CGQA 2AVAA 2MY5A 2MD9A 3RG2A 2DNWA 2KGCA 4MRTC 2MR7A 2MVUA 2N6ZA 3EJBA 2L4BA 1HY8A 1T8KA 2LIWA 2CG5B 5KP8B 1OR5A 5CZDB 2KGEA 2K92A 2LMLA 3EJDA 2KW2A 2L9FA 2AF8A 5EJDA 2M5RA 2FHSC 2FQ2A 2JGPA 2FVFA 2KOSA 2ROQA 2GDYA 1DNYA 1VKUA 2EHSA 3EJEA 2VSQA 2KG8A 2K2QA 2N5IA 2FVEA 3CE7A 2GDXA 4BPHA 2LPKA 2AFEA 4BPGA 4HKGA 2N50A 2GDWA 2AFDA 2LOLA 2LIUA 4IZ6A 2MVVA 2KG9A 4H2XC 2KOOA 2KR5A 1X3OA 2CNRA 2KOQA 2K93A 2LL8A 2K94A 2LTEA 1L0IA 5KP7B 2LKIA 1HQBA 2FQ0A 2JU1A 2FADA 2MF4A 3GZLA 1ACPA 2L22A 2N98A 5KP6B 2N5HA 2CQ8A 2K0XA 2X2BA 2QNWA 4R0MA 4PWVB 2L0QA 2XZ0D 4H2YC 2FVAA 1KLPA 1L0HA 4NEOA 4DG9A 4CA3A 4PXHB 2XZ1C 2KGDA 2KOPA 2MR8A 2PNGA 5HVCA 2KG6A
chains in the Genus database with same CATH superfamily

3G28A 1Q81Q 2JAZA 1VQ7P 5HV8A 3B4QA 4WYMA 5HGOA 2FQ1A 2KWLA 1RO2A 4COCA 1DV5A 2N6YA 3CD6P 2BHVA 2OARA 4MRTC 1VQ8P 2MR7A 3EJBA 1RNIA 1VQ9P 1HY8A 1JJ2O 2CG5B 5KP8B 4PH0A 2JYGA 2M8LA 2K92A 1GPJA 1AYIA 2PEOA 3CC7P 1Q7YQ 4GR2A 2FQ2A 1M6EX 4PH1A 1VKUA 1D1DA 3CMAP 3CMEP 1VQOP 2K5XA 3CE7A 4BPHA 2KODA 2GDXA 1VQ6P 4COPA 2PEJA 1VQKP 4BPGA 5HGLA 2PEQA 2LOLA 3NTEA 2VLQA 3G71P 1UNKA 2DGYA 2M8PA 2PEIA 2LF4A 2GZFA 3G1GA 3LRYA 2CNRA 2K94A 1HQBA 1ACPA 4UHPB 1E0HA 2N5HA 2L6EA 3G4SP 5I4TG 4PWVB 3E2DA 1VQLP 4DG9A 2XT1A 2XZ1C 2PNGA 3M1MA 4XFXA 4F37A 3G21A 2Z44A 4H2WC 1BXIA 4BPFA 3CCMP 4QKOA 2EHTA 2FAEA 3GZMA 4QNBA 2JQ4A 4XRQA 5F2KA 2FACA 2DNWA 1Z6MA 2MVUA 3DS4A 3CCQP 2L4BA 2LIWA 5F2NA 1S72P 3Q20A 2LMLA 4U0DA 3DPHA 2L9FA 1A43A 2M5RA 2VLPA 2FVFA 2JB0A 1RO0A 1IMPA 1M6NA 2VSQA 3DTJA 3CPWO 1Q82Q 2JBGA 2KG8A 2K2QA 2N5IA 2FVEA 2AFEA 3H0DA 4HKGA 3DS0A 1EMVA 2GYKA 3CXCO 2MVVA 2KOOA 1VQPP 3U43A 1EOQA 1KD1Q 1IUQA 2K93A 2LTEA 3G26A 2LKIA 2GZEA 5KP7B 2FQ0A 5F2OA 1IMQA 5DCKA 2QNWA 3H4EA 1L0HA 2NO8A 4XROA 3I55P 4PXHB 2KGDA 2QA4P 2KG6A 3VRLC 3LMOA 3RG6C 3G1IA 2Z45A 1AF8A 1W2BO 3GKLC 5HGMA 1Q86Q 4XFYA 5EW5E 1F80D 1M90Q 2EIAA 1YI2P 1VQMP 3DS1A 2GZGA 2AVAA 2MY5A 3HZQA 3CC4P 2N6ZA 1GXHA 5JPAA 2KGEA 2ONTA 1K73Q 3EJDA 1YJNP 1AUMA 2ERHA 3CCUP 2JGPA 1KQSO 2PEMA 1FR2A 2GDYA 3CC2P 2E1MA 2GZIA 3EJEA 1VQ4P 5BS1A 5HGNA 3CCJP 3CCEP 3B5IA 2LPKA 1E6JP 2N50A 2GDWA 2AFDA 2BUOA 1YIJP 3G6EP 4U0AA 3H47A 1X3OA 2WPTA 2KOQA 2LL8A 1QVFO 1YITP 1K9MQ 3G29A 2MF4A 2FADA 3P05A 3GZLA 2L22A 2N98A 4U0BA 5KP6B 5BS2A 1K30A 3GJNA 2K0XA 2X2BA 1ZMBA 4R0MA 2VLNA 2L0QA 2XZ0D 4H2YC 2FVAA 1KLPA 2PEKA 4U0CA 1M74A 4NEOA 2VLOA 4CA3A 3DS3A 3CCLP 2JO0A 2KORA 3NY7B 2OTJP 2JU2A 2K0YA 1VQNP 1N8RQ 3HYBA 1EIAA 1NQ4A 2JYLA 2KGAA 1BAJA 2EFJA 3CCSP 2CGQA 2MD9A 4M0IA 3RG2A 2KGCA 1T8KA 4U0EA 1A8OA 1OR5A 2PY8A 5CZDB 2P9XA 3G0VA 3I56P 2PENA 2KW2A 2GZJA 3DS2A 2CWOA 2AF8A 5EJDA 2FHSC 1VHNA 2KOSA 2ROQA 2OTLP 1DNYA 1CEIA 4IPYA 4GR6A 2EHSA 2QEXP 2M8NA 1UJZA 3OW2O 1QRJA 2LIUA 4IZ6A 1M1KQ 2EG5A 1YJ9P 1GXGA 2KG9A 3MGEA 2K0DX 4H2XC 1MZ8A 7CEIA 2KR5A 3WBHA 4XFZA 1L0IA 2JU1A 2XV6A 1YHQP 2Z46A 1YJWP 3CCRP 1VQ5P 2XXMA 4U0FA 2CQ8A 1NJIQ 1K8AQ 1ZNVA 2KOPA 2MR8A 1QVGO 1KC8Q 3CCVP 5HVCA 3DS5A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3LMO A;  2KOR A;  3NY7 B;  1AF8 A;  4H2W C;  2JU2 A;  2K0Y A;  4BPF A;  5HV8 A;  1NQ4 A;  2EHT A;  2FAE A;  3GZM A;  2KGA A;  1F80 D;  2FQ1 A;  2JQ4 A;  2KWL A;  1DV5 A;  2FAC A;  2N6Y A;  2CGQ A;  2AVA A;  2MY5 A;  2MD9 A;  3RG2 A;  2DNW A;  2KGC A;  4MRT C;  2MR7 A;  2MVU A;  2N6Z A;  3EJB A;  2L4B A;  1HY8 A;  1T8K A;  2LIW A;  2CG5 B;  5KP8 B;  1OR5 A;  5CZD B;  2KGE A;  2K92 A;  2LML A;  3EJD A;  2KW2 A;  2L9F A;  2AF8 A;  5EJD A;  2M5R A;  2FHS C;  2FQ2 A;  2JGP A;  2FVF A;  2KOS A;  2ROQ A;  2GDY A;  1DNY A;  1VKU A;  2EHS A;  3EJE A;  2VSQ A;  2KG8 A;  2K2Q A;  2N5I A;  2FVE A;  3CE7 A;  2GDX A;  4BPH A;  2LPK A;  2AFE A;  4BPG A;  4HKG A;  2N50 A;  2GDW A;  2AFD A;  2LOL A;  2LIU A;  4IZ6 A;  2MVV A;  2KG9 A;  4H2X C;  2KOO A;  2KR5 A;  1X3O A;  2CNR A;  2KOQ A;  2K93 A;  2LL8 A;  2K94 A;  2LTE A;  1L0I A;  5KP7 B;  2LKI A;  1HQB A;  2FQ0 A;  2JU1 A;  2FAD A;  2MF4 A;  3GZL A;  1ACP A;  2L22 A;  2N98 A;  5KP6 B;  2N5H A;  2CQ8 A;  2K0X A;  2X2B A;  2QNW A;  4R0M A;  4PWV B;  2L0Q A;  2XZ0 D;  4H2Y C;  2FVA A;  1KLP A;  1L0H A;  4NEO A;  4DG9 A;  4CA3 A;  4PXH B;  2XZ1 C;  2KGD A;  2KOP A;  2MR8 A;  2PNG A;  5HVC A;  2KG6 A; 
#chains in the Genus database with same CATH topology
 3G28 A;  1Q81 Q;  2JAZ A;  1VQ7 P;  5HV8 A;  3B4Q A;  4WYM A;  5HGO A;  2FQ1 A;  2KWL A;  1RO2 A;  4COC A;  1DV5 A;  2N6Y A;  3CD6 P;  2BHV A;  2OAR A;  4MRT C;  1VQ8 P;  2MR7 A;  3EJB A;  1RNI A;  1VQ9 P;  1HY8 A;  1JJ2 O;  2CG5 B;  5KP8 B;  4PH0 A;  2JYG A;  2M8L A;  2K92 A;  1GPJ A;  1AYI A;  2PEO A;  3CC7 P;  1Q7Y Q;  4GR2 A;  2FQ2 A;  1M6E X;  4PH1 A;  1VKU A;  1D1D A;  3CMA P;  3CME P;  1VQO P;  2K5X A;  3CE7 A;  4BPH A;  2KOD A;  2GDX A;  1VQ6 P;  4COP A;  2PEJ A;  1VQK P;  4BPG A;  5HGL A;  2PEQ A;  2LOL A;  3NTE A;  2VLQ A;  3G71 P;  1UNK A;  2DGY A;  2M8P A;  2PEI A;  2LF4 A;  2GZF A;  3G1G A;  3LRY A;  2CNR A;  2K94 A;  1HQB A;  1ACP A;  4UHP B;  1E0H A;  2N5H A;  2L6E A;  3G4S P;  5I4T G;  4PWV B;  3E2D A;  1VQL P;  4DG9 A;  2XT1 A;  2XZ1 C;  2PNG A;  3M1M A;  4XFX A;  4F37 A;  3G21 A;  2Z44 A;  4H2W C;  1BXI A;  4BPF A;  3CCM P;  4QKO A;  2EHT A;  2FAE A;  3GZM A;  4QNB A;  2JQ4 A;  4XRQ A;  5F2K A;  2FAC A;  2DNW A;  1Z6M A;  2MVU A;  3DS4 A;  3CCQ P;  2L4B A;  2LIW A;  5F2N A;  1S72 P;  3Q20 A;  2LML A;  4U0D A;  3DPH A;  2L9F A;  1A43 A;  2M5R A;  2VLP A;  2FVF A;  2JB0 A;  1RO0 A;  1IMP A;  1M6N A;  2VSQ A;  3DTJ A;  3CPW O;  1Q82 Q;  2JBG A;  2KG8 A;  2K2Q A;  2N5I A;  2FVE A;  2AFE A;  3H0D A;  4HKG A;  3DS0 A;  1EMV A;  2GYK A;  3CXC O;  2MVV A;  2KOO A;  1VQP P;  3U43 A;  1EOQ A;  1KD1 Q;  1IUQ A;  2K93 A;  2LTE A;  3G26 A;  2LKI A;  2GZE A;  5KP7 B;  2FQ0 A;  5F2O A;  1IMQ A;  5DCK A;  2QNW A;  3H4E A;  1L0H A;  2NO8 A;  4XRO A;  3I55 P;  4PXH B;  2KGD A;  2QA4 P;  2KG6 A;  3VRL C;  3LMO A;  3RG6 C;  3G1I A;  2Z45 A;  1AF8 A;  1W2B O;  3GKL C;  5HGM A;  1Q86 Q;  4XFY A;  5EW5 E;  1F80 D;  1M90 Q;  2EIA A;  1YI2 P;  1VQM P;  3DS1 A;  2GZG A;  2AVA A;  2MY5 A;  3HZQ A;  3CC4 P;  2N6Z A;  1GXH A;  5JPA A;  2KGE A;  2ONT A;  1K73 Q;  3EJD A;  1YJN P;  1AUM A;  2ERH A;  3CCU P;  2JGP A;  1KQS O;  2PEM A;  1FR2 A;  2GDY A;  3CC2 P;  2E1M A;  2GZI A;  3EJE A;  1VQ4 P;  5BS1 A;  5HGN A;  3CCJ P;  3CCE P;  3B5I A;  2LPK A;  1E6J P;  2N50 A;  2GDW A;  2AFD A;  2BUO A;  1YIJ P;  3G6E P;  4U0A A;  3H47 A;  1X3O A;  2WPT A;  2KOQ A;  2LL8 A;  1QVF O;  1YIT P;  1K9M Q;  3G29 A;  2MF4 A;  2FAD A;  3P05 A;  3GZL A;  2L22 A;  2N98 A;  4U0B A;  5KP6 B;  5BS2 A;  1K30 A;  3GJN A;  2K0X A;  2X2B A;  1ZMB A;  4R0M A;  2VLN A;  2L0Q A;  2XZ0 D;  4H2Y C;  2FVA A;  1KLP A;  2PEK A;  4U0C A;  1M74 A;  4NEO A;  2VLO A;  4CA3 A;  3DS3 A;  3CCL P;  2JO0 A;  2KOR A;  3NY7 B;  2OTJ P;  2JU2 A;  2K0Y A;  1VQN P;  1N8R Q;  3HYB A;  1EIA A;  1NQ4 A;  2JYL A;  2KGA A;  1BAJ A;  2EFJ A;  3CCS P;  2CGQ A;  2MD9 A;  4M0I A;  3RG2 A;  2KGC A;  1T8K A;  4U0E A;  1A8O A;  1OR5 A;  2PY8 A;  5CZD B;  2P9X A;  3G0V A;  3I56 P;  2PEN A;  2KW2 A;  2GZJ A;  3DS2 A;  2CWO A;  2AF8 A;  5EJD A;  2FHS C;  1VHN A;  2KOS A;  2ROQ A;  2OTL P;  1DNY A;  1CEI A;  4IPY A;  4GR6 A;  2EHS A;  2QEX P;  2M8N A;  1UJZ A;  3OW2 O;  1QRJ A;  2LIU A;  4IZ6 A;  1M1K Q;  2EG5 A;  1YJ9 P;  1GXG A;  2KG9 A;  3MGE A;  2K0D X;  4H2X C;  1MZ8 A;  7CEI A;  2KR5 A;  3WBH A;  4XFZ A;  1L0I A;  2JU1 A;  2XV6 A;  1YHQ P;  2Z46 A;  1YJW P;  3CCR P;  1VQ5 P;  2XXM A;  4U0F A;  2CQ8 A;  1NJI Q;  1K8A Q;  1ZNV A;  2KOP A;  2MR8 A;  1QVG O;  1KC8 Q;  3CCV P;  5HVC A;  3DS5 A; 
#chains in the Genus database with same CATH homology
 3LMO A;  2KOR A;  3NY7 B;  1AF8 A;  4H2W C;  2JU2 A;  2K0Y A;  4BPF A;  5HV8 A;  1NQ4 A;  2EHT A;  2FAE A;  3GZM A;  2KGA A;  1F80 D;  2FQ1 A;  2JQ4 A;  2KWL A;  1DV5 A;  2FAC A;  2N6Y A;  2CGQ A;  2AVA A;  2MY5 A;  2MD9 A;  3RG2 A;  2DNW A;  2KGC A;  4MRT C;  2MR7 A;  2MVU A;  2N6Z A;  3EJB A;  2L4B A;  1HY8 A;  1T8K A;  2LIW A;  2CG5 B;  5KP8 B;  1OR5 A;  5CZD B;  2KGE A;  2K92 A;  2LML A;  3EJD A;  2KW2 A;  2L9F A;  2AF8 A;  5EJD A;  2M5R A;  2FHS C;  2FQ2 A;  2JGP A;  2FVF A;  2KOS A;  2ROQ A;  2GDY A;  1DNY A;  1VKU A;  2EHS A;  3EJE A;  2VSQ A;  2KG8 A;  2K2Q A;  2N5I A;  2FVE A;  3CE7 A;  2GDX A;  4BPH A;  2LPK A;  2AFE A;  4BPG A;  4HKG A;  2N50 A;  2GDW A;  2AFD A;  2LOL A;  2LIU A;  4IZ6 A;  2MVV A;  2KG9 A;  4H2X C;  2KOO A;  2KR5 A;  1X3O A;  2CNR A;  2KOQ A;  2K93 A;  2LL8 A;  2K94 A;  2LTE A;  1L0I A;  5KP7 B;  2LKI A;  1HQB A;  2FQ0 A;  2JU1 A;  2FAD A;  2MF4 A;  3GZL A;  1ACP A;  2L22 A;  2N98 A;  5KP6 B;  2N5H A;  2CQ8 A;  2K0X A;  2X2B A;  2QNW A;  4R0M A;  4PWV B;  2L0Q A;  2XZ0 D;  4H2Y C;  2FVA A;  1KLP A;  1L0H A;  4NEO A;  4DG9 A;  4CA3 A;  4PXH B;  2XZ1 C;  2KGD A;  2KOP A;  2MR8 A;  2PNG A;  5HVC A;  2KG6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2FVAA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations