2KGDA

Nmr solution structures of 3-oxo-butyl-acp, an intermediate mimic from the actinorhodin polyketide synthase in streptomyces coelicolor
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
86
structure length
86
Chain Sequence
MATLLTTDDLRRALVESAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALAEAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Probing the Interactions of Early Polyketide Intermediates with the Actinorhodin ACP from S. coelicolor A3(2).
pubmed doi rcsb
molecule tags Biosynthetic protein
source organism Streptomyces coelicolor
molecule keywords Actinorhodin polyketide synthase acyl carrier protein
total genus 26
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2009-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 2kgdA00
2FQ1A 2LL8A 1T8KA 2PNGA 3CE7A 2X2BA 2FHSC 2LKIA 1VKUA 4IZ6A 2MR7A 2KG9A 2CG5B 1DV5A 2KOSA 2AF8A 2MF4A 2LMLA 3EJDA 3NY7B 2KW2A 2FACA 2GDYA 2FQ0A 2DNWA 4BPFA 2KOQA 2JGPA 3GZMA 1HQBA 4R0MA 4DG9A 2JU1A 2KGCA 2EHSA 5CZDB 3RG2A 2QNWA 1AF8A 2L0QA 2AFDA 2XZ1C 2FVAA 2KWLA 2KG6A 2L4BA 2XZ0D 2CNRA 2EHTA 5HVCA 2MR8A 2LIUA 2L22A 4CA3A 1F80D 2VSQA 2LIWA 1NQ4A 2N98A 2KGEA 4PWVB 2K0YA 2GDWA 5HV8A 2FAEA 4H2WC 2LPKA 4H2YC 5KP7B 2K94A 3GZLA 2N6YA 2K92A 4H2XC 2KOPA 2CGQA 4NEOA 2FQ2A 1OR5A 2ROQA 2K93A 2AVAA 2KGDA 2L9FA 4BPHA 2FADA 1ACPA 2KOOA 2N50A 5KP6B 1L0IA 2CQ8A 2K0XA 1KLPA 3EJEA 5KP8B 2AFEA 2KORA 2MVUA 2MY5A 2N5HA 2K2QA 2KR5A 1X3OA 2N5IA 2JQ4A 2MD9A 2LOLA 4HKGA 2JU2A 2LTEA 1DNYA 3LMOA 1L0HA 2FVEA 2MVVA 2FVFA 2KG8A 4MRTC 2GDXA 5EJDA 2M5RA 3EJBA 1HY8A 2N6ZA 2KGAA 4PXHB 4BPGA
chains in the Genus database with same CATH superfamily
3CC2P 1Q86Q 2LL8A 1T8KA 3CMAP 3CCVP 2X2BA 1MZ8A 2JBGA 1VQ5P 1BAJA 2KG9A 2JYLA 1VHNA 2AF8A 5DCKA 1EMVA 2VLNA 2P9XA 2FQ0A 2DNWA 5HGMA 2K0DX 2XXMA 2JGPA 1M90Q 2BHVA 3Q20A 1EOQA 1ZMBA 3CC4P 5BS1A 2KGCA 1M6NA 5CZDB 3CPWO 1AF8A 2XZ1C 2L4BA 2MR8A 1UNKA 2VLOA 2L22A 1Q82Q 2N98A 1GXHA 2VLPA 2KGEA 4PWVB 1YIJP 2DGYA 5HV8A 2LPKA 2N6YA 2K92A 4NEOA 4XFXA 1OR5A 2K93A 2EFJA 2L9FA 1ACPA 1VQ9P 3HZQA 5KP6B 2CQ8A 3CCMP 2AFEA 2JO0A 4COPA 3P05A 4GR2A 2K2QA 2LOLA 3LRYA 1YJ9P 2FVFA 3DS3A 3G71P 4MRTC 1UJZA 3EJBA 2GZEA 2N6ZA 2KODA 2XV6A 1YITP 1Z6MA 3CCRP 1E0HA 1E6JP 3H0DA 1ZNVA 5JPAA 3RG6C 2JB0A 3I56P 1VQOP 2GZFA 1VQ4P 2CG5B 1DV5A 1K73Q 1VQKP 2MF4A 3EJDA 3OW2O 2KW2A 2FACA 3I55P 3GKLC 1GXGA 3M1MA 3CCQP 1HQBA 4COCA 4R0MA 2JU1A 2OTLP 2GZIA 2L6EA 2E1MA 2EHSA 3DS0A 1VQ7P 4UHPB 2Z45A 1VQ6P 3DS1A 2AFDA 2XZ0D 2CNRA 3G0VA 2EG5A 3CCJP 3GJNA 4U0FA 4CA3A 2OARA 2LIWA 3G6EP 3G1GA 1IUQA 4U0EA 4WYMA 1RO2A 2FAEA 2PEMA 4XFYA 2K94A 2ERHA 4H2XC 2KOPA 1VQNP 2CGQA 2JYGA 2FQ2A 1N8RQ 3CC7P 2AVAA 5F2OA 1YHQP 3G1IA 1L0IA 1KLPA 3EJEA 2MY5A 2KORA 2OTJP 3CCSP 3G28A 1X3OA 2MD9A 2LTEA 2MVVA 3CXCO 1GPJA 5EJDA 3G4SP 1VQPP 1AUMA 1HY8A 4U0CA 2KGAA 1M1KQ 3U43A 4U0AA 2PNGA 1CEIA 2LKIA 2M8LA 2Z46A 1VKUA 1D1DA 3DPHA 5EW5E 2GDYA 4BPFA 1K8AQ 2GYKA 3GZMA 1FR2A 1EIAA 4DG9A 3CD6P 1JJ2O 3G21A 2L0QA 2FVAA 2Z44A 3G26A 2KWLA 4XRQA 7CEIA 2LIUA 4F37A 1NJIQ 2VSQA 2GDWA 4IPYA 3DTJA 2PEOA 4XFZA 2XT1A 5HGNA 1A43A 2KGDA 1A8OA 2NO8A 1Q7YQ 2M8PA 1KQSO 2PEIA 1VQMP 2N50A 5F2NA 3DS4A 4XROA 3HYBA 2N5HA 2BUOA 1IMQA 2CWOA 2KR5A 4HKGA 1S72P 3LMOA 2FVEA 2GDXA 4U0BA 3G29A 3DS5A 4QKOA 2M5RA 5HGLA 1QRJA 2FQ1A 5I4TG 1YJWP 3DS2A 3CE7A 1AYIA 2FHSC 3E2DA 2M8NA 4IZ6A 2MR7A 2ONTA 3CMEP 2KOSA 1IMPA 2PEKA 2GZGA 1YI2P 1KD1Q 2LMLA 1BXIA 3NY7B 1M74A 3WBHA 3H4EA 2KOQA 3B4QA 3CCUP 2K5XA 4GR6A 4U0DA 3RG2A 1W2BO 2PEJA 1Q81Q 2EIAA 2QNWA 4PH1A 2KG6A 2PY8A 2EHTA 5HVCA 3CCEP 2JAZA 3CCLP 2WPTA 1F80D 3MGEA 2QA4P 2VLQA 1NQ4A 2K0YA 3NTEA 4H2WC 1K9MQ 4H2YC 5KP7B 3GZLA 2ROQA 2QEXP 1RO0A 4BPHA 4PH0A 1K30A 1YJNP 2PENA 1VQLP 2FADA 3VRLC 1VQ8P 4M0IA 1RNIA 2KOOA 3B5IA 2K0XA 1M6EX 5KP8B 2GZJA 2MVUA 1QVGO 2LF4A 5F2KA 2PEQA 2N5IA 2JQ4A 1DNYA 2JU2A 1L0HA 2KG8A 5BS2A 4QNBA 1KC8Q 1QVFO 3H47A 4PXHB 5HGOA 4BPGA
chains in the Genus database with same CATH topology
2FQ1A 2LL8A 1T8KA 2PNGA 3CE7A 2X2BA 2FHSC 2LKIA 1VKUA 4IZ6A 2MR7A 2KG9A 2CG5B 1DV5A 2KOSA 2AF8A 2MF4A 2LMLA 3EJDA 3NY7B 2KW2A 2FACA 2GDYA 2FQ0A 2DNWA 4BPFA 2KOQA 2JGPA 3GZMA 1HQBA 4R0MA 4DG9A 2JU1A 2KGCA 2EHSA 5CZDB 3RG2A 2QNWA 1AF8A 2L0QA 2AFDA 2XZ1C 2FVAA 2KWLA 2KG6A 2L4BA 2XZ0D 2CNRA 2EHTA 5HVCA 2MR8A 2LIUA 2L22A 4CA3A 1F80D 2VSQA 2LIWA 1NQ4A 2N98A 2KGEA 4PWVB 2K0YA 2GDWA 5HV8A 2FAEA 4H2WC 2LPKA 4H2YC 5KP7B 2K94A 3GZLA 2N6YA 2K92A 4H2XC 2KOPA 2CGQA 4NEOA 2FQ2A 1OR5A 2ROQA 2K93A 2AVAA 2KGDA 2L9FA 4BPHA 2FADA 1ACPA 2KOOA 2N50A 5KP6B 1L0IA 2CQ8A 2K0XA 1KLPA 3EJEA 5KP8B 2AFEA 2KORA 2MVUA 2MY5A 2N5HA 2K2QA 2KR5A 1X3OA 2N5IA 2JQ4A 2MD9A 2LOLA 4HKGA 2JU2A 2LTEA 1DNYA 3LMOA 1L0HA 2FVEA 2MVVA 2FVFA 2KG8A 4MRTC 2GDXA 5EJDA 2M5RA 3EJBA 1HY8A 2N6ZA 2KGAA 4PXHB 4BPGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FQ1 A;  2LL8 A;  1T8K A;  2PNG A;  3CE7 A;  2X2B A;  2FHS C;  2LKI A;  1VKU A;  4IZ6 A;  2MR7 A;  2KG9 A;  2CG5 B;  1DV5 A;  2KOS A;  2AF8 A;  2MF4 A;  2LML A;  3EJD A;  3NY7 B;  2KW2 A;  2FAC A;  2GDY A;  2FQ0 A;  2DNW A;  4BPF A;  2KOQ A;  2JGP A;  3GZM A;  1HQB A;  4R0M A;  4DG9 A;  2JU1 A;  2KGC A;  2EHS A;  5CZD B;  3RG2 A;  2QNW A;  1AF8 A;  2L0Q A;  2AFD A;  2XZ1 C;  2FVA A;  2KWL A;  2KG6 A;  2L4B A;  2XZ0 D;  2CNR A;  2EHT A;  5HVC A;  2MR8 A;  2LIU A;  2L22 A;  4CA3 A;  1F80 D;  2VSQ A;  2LIW A;  1NQ4 A;  2N98 A;  2KGE A;  4PWV B;  2K0Y A;  2GDW A;  5HV8 A;  2FAE A;  4H2W C;  2LPK A;  4H2Y C;  5KP7 B;  2K94 A;  3GZL A;  2N6Y A;  2K92 A;  4H2X C;  2KOP A;  2CGQ A;  4NEO A;  2FQ2 A;  1OR5 A;  2ROQ A;  2K93 A;  2AVA A;  2KGD A;  2L9F A;  4BPH A;  2FAD A;  1ACP A;  2KOO A;  2N50 A;  5KP6 B;  1L0I A;  2CQ8 A;  2K0X A;  1KLP A;  3EJE A;  5KP8 B;  2AFE A;  2KOR A;  2MVU A;  2MY5 A;  2N5H A;  2K2Q A;  2KR5 A;  1X3O A;  2N5I A;  2JQ4 A;  2MD9 A;  2LOL A;  4HKG A;  2JU2 A;  2LTE A;  1DNY A;  3LMO A;  1L0H A;  2FVE A;  2MVV A;  2FVF A;  2KG8 A;  4MRT C;  2GDX A;  5EJD A;  2M5R A;  3EJB A;  1HY8 A;  2N6Z A;  2KGA A;  4PXH B;  4BPG A; 
#chains in the Genus database with same CATH topology
 3CC2 P;  1Q86 Q;  2LL8 A;  1T8K A;  3CMA P;  3CCV P;  2X2B A;  1MZ8 A;  2JBG A;  1VQ5 P;  1BAJ A;  2KG9 A;  2JYL A;  1VHN A;  2AF8 A;  5DCK A;  1EMV A;  2VLN A;  2P9X A;  2FQ0 A;  2DNW A;  5HGM A;  2K0D X;  2XXM A;  2JGP A;  1M90 Q;  2BHV A;  3Q20 A;  1EOQ A;  1ZMB A;  3CC4 P;  5BS1 A;  2KGC A;  1M6N A;  5CZD B;  3CPW O;  1AF8 A;  2XZ1 C;  2L4B A;  2MR8 A;  1UNK A;  2VLO A;  2L22 A;  1Q82 Q;  2N98 A;  1GXH A;  2VLP A;  2KGE A;  4PWV B;  1YIJ P;  2DGY A;  5HV8 A;  2LPK A;  2N6Y A;  2K92 A;  4NEO A;  4XFX A;  1OR5 A;  2K93 A;  2EFJ A;  2L9F A;  1ACP A;  1VQ9 P;  3HZQ A;  5KP6 B;  2CQ8 A;  3CCM P;  2AFE A;  2JO0 A;  4COP A;  3P05 A;  4GR2 A;  2K2Q A;  2LOL A;  3LRY A;  1YJ9 P;  2FVF A;  3DS3 A;  3G71 P;  4MRT C;  1UJZ A;  3EJB A;  2GZE A;  2N6Z A;  2KOD A;  2XV6 A;  1YIT P;  1Z6M A;  3CCR P;  1E0H A;  1E6J P;  3H0D A;  1ZNV A;  5JPA A;  3RG6 C;  2JB0 A;  3I56 P;  1VQO P;  2GZF A;  1VQ4 P;  2CG5 B;  1DV5 A;  1K73 Q;  1VQK P;  2MF4 A;  3EJD A;  3OW2 O;  2KW2 A;  2FAC A;  3I55 P;  3GKL C;  1GXG A;  3M1M A;  3CCQ P;  1HQB A;  4COC A;  4R0M A;  2JU1 A;  2OTL P;  2GZI A;  2L6E A;  2E1M A;  2EHS A;  3DS0 A;  1VQ7 P;  4UHP B;  2Z45 A;  1VQ6 P;  3DS1 A;  2AFD A;  2XZ0 D;  2CNR A;  3G0V A;  2EG5 A;  3CCJ P;  3GJN A;  4U0F A;  4CA3 A;  2OAR A;  2LIW A;  3G6E P;  3G1G A;  1IUQ A;  4U0E A;  4WYM A;  1RO2 A;  2FAE A;  2PEM A;  4XFY A;  2K94 A;  2ERH A;  4H2X C;  2KOP A;  1VQN P;  2CGQ A;  2JYG A;  2FQ2 A;  1N8R Q;  3CC7 P;  2AVA A;  5F2O A;  1YHQ P;  3G1I A;  1L0I A;  1KLP A;  3EJE A;  2MY5 A;  2KOR A;  2OTJ P;  3CCS P;  3G28 A;  1X3O A;  2MD9 A;  2LTE A;  2MVV A;  3CXC O;  1GPJ A;  5EJD A;  3G4S P;  1VQP P;  1AUM A;  1HY8 A;  4U0C A;  2KGA A;  1M1K Q;  3U43 A;  4U0A A;  2PNG A;  1CEI A;  2LKI A;  2M8L A;  2Z46 A;  1VKU A;  1D1D A;  3DPH A;  5EW5 E;  2GDY A;  4BPF A;  1K8A Q;  2GYK A;  3GZM A;  1FR2 A;  1EIA A;  4DG9 A;  3CD6 P;  1JJ2 O;  3G21 A;  2L0Q A;  2FVA A;  2Z44 A;  3G26 A;  2KWL A;  4XRQ A;  7CEI A;  2LIU A;  4F37 A;  1NJI Q;  2VSQ A;  2GDW A;  4IPY A;  3DTJ A;  2PEO A;  4XFZ A;  2XT1 A;  5HGN A;  1A43 A;  2KGD A;  1A8O A;  2NO8 A;  1Q7Y Q;  2M8P A;  1KQS O;  2PEI A;  1VQM P;  2N50 A;  5F2N A;  3DS4 A;  4XRO A;  3HYB A;  2N5H A;  2BUO A;  1IMQ A;  2CWO A;  2KR5 A;  4HKG A;  1S72 P;  3LMO A;  2FVE A;  2GDX A;  4U0B A;  3G29 A;  3DS5 A;  4QKO A;  2M5R A;  5HGL A;  1QRJ A;  2FQ1 A;  5I4T G;  1YJW P;  3DS2 A;  3CE7 A;  1AYI A;  2FHS C;  3E2D A;  2M8N A;  4IZ6 A;  2MR7 A;  2ONT A;  3CME P;  2KOS A;  1IMP A;  2PEK A;  2GZG A;  1YI2 P;  1KD1 Q;  2LML A;  1BXI A;  3NY7 B;  1M74 A;  3WBH A;  3H4E A;  2KOQ A;  3B4Q A;  3CCU P;  2K5X A;  4GR6 A;  4U0D A;  3RG2 A;  1W2B O;  2PEJ A;  1Q81 Q;  2EIA A;  2QNW A;  4PH1 A;  2KG6 A;  2PY8 A;  2EHT A;  5HVC A;  3CCE P;  2JAZ A;  3CCL P;  2WPT A;  1F80 D;  3MGE A;  2QA4 P;  2VLQ A;  1NQ4 A;  2K0Y A;  3NTE A;  4H2W C;  1K9M Q;  4H2Y C;  5KP7 B;  3GZL A;  2ROQ A;  2QEX P;  1RO0 A;  4BPH A;  4PH0 A;  1K30 A;  1YJN P;  2PEN A;  1VQL P;  2FAD A;  3VRL C;  1VQ8 P;  4M0I A;  1RNI A;  2KOO A;  3B5I A;  2K0X A;  1M6E X;  5KP8 B;  2GZJ A;  2MVU A;  1QVG O;  2LF4 A;  5F2K A;  2PEQ A;  2N5I A;  2JQ4 A;  1DNY A;  2JU2 A;  1L0H A;  2KG8 A;  5BS2 A;  4QNB A;  1KC8 Q;  1QVF O;  3H47 A;  4PXH B;  5HGO A;  4BPG A; 
#chains in the Genus database with same CATH homology
 2FQ1 A;  2LL8 A;  1T8K A;  2PNG A;  3CE7 A;  2X2B A;  2FHS C;  2LKI A;  1VKU A;  4IZ6 A;  2MR7 A;  2KG9 A;  2CG5 B;  1DV5 A;  2KOS A;  2AF8 A;  2MF4 A;  2LML A;  3EJD A;  3NY7 B;  2KW2 A;  2FAC A;  2GDY A;  2FQ0 A;  2DNW A;  4BPF A;  2KOQ A;  2JGP A;  3GZM A;  1HQB A;  4R0M A;  4DG9 A;  2JU1 A;  2KGC A;  2EHS A;  5CZD B;  3RG2 A;  2QNW A;  1AF8 A;  2L0Q A;  2AFD A;  2XZ1 C;  2FVA A;  2KWL A;  2KG6 A;  2L4B A;  2XZ0 D;  2CNR A;  2EHT A;  5HVC A;  2MR8 A;  2LIU A;  2L22 A;  4CA3 A;  1F80 D;  2VSQ A;  2LIW A;  1NQ4 A;  2N98 A;  2KGE A;  4PWV B;  2K0Y A;  2GDW A;  5HV8 A;  2FAE A;  4H2W C;  2LPK A;  4H2Y C;  5KP7 B;  2K94 A;  3GZL A;  2N6Y A;  2K92 A;  4H2X C;  2KOP A;  2CGQ A;  4NEO A;  2FQ2 A;  1OR5 A;  2ROQ A;  2K93 A;  2AVA A;  2KGD A;  2L9F A;  4BPH A;  2FAD A;  1ACP A;  2KOO A;  2N50 A;  5KP6 B;  1L0I A;  2CQ8 A;  2K0X A;  1KLP A;  3EJE A;  5KP8 B;  2AFE A;  2KOR A;  2MVU A;  2MY5 A;  2N5H A;  2K2Q A;  2KR5 A;  1X3O A;  2N5I A;  2JQ4 A;  2MD9 A;  2LOL A;  4HKG A;  2JU2 A;  2LTE A;  1DNY A;  3LMO A;  1L0H A;  2FVE A;  2MVV A;  2FVF A;  2KG8 A;  4MRT C;  2GDX A;  5EJD A;  2M5R A;  3EJB A;  1HY8 A;  2N6Z A;  2KGA A;  4PXH B;  4BPG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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