2L6EA

Nmr structure of the monomeric mutant c-terminal domain of hiv-1 capsid in complex with stapled peptide inhibitor
Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
94
structure length
94
Chain Sequence
SGLVPRGSHMTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein/inhibitor
source organism Human immunodeficiency virus 1
publication title Solution structure of a hydrocarbon stapled peptide inhibitor in complex with monomeric C-terminal domain of HIV-1 capsid.
pubmed doi rcsb
molecule keywords Capsid protein p24
total genus 28
structure length 94
sequence length 94
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2010-11-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2l6eA00
1BAJA 4XROA 3DS3A 3DS2A 2XXMA 2KODA 3DS5A 3DTJA 3G0VA 3G26A 4U0FA 1AUMA 3P05A 2XT1A 5JPAA 5HGMA 3NTEA 3G1IA 2XV6A 2L6EA 1A8OA 2M8NA 4U0AA 2BUOA 4XFYA 4U0DA 4M0IA 4XFXA 2LF4A 2JO0A 2EIAA 1E6JP 3G28A 4QNBA 3LRYA 4WYMA 1D1DA 2JYLA 3DS4A 5I4TG 2M8LA 3G21A 4PH0A 2ONTA 2M8PA 3H4EA 4U0BA 1QRJA 4XRQA 3DS1A 3DPHA 3DS0A 3VRLC 3MGEA 5DCKA 4XFZA 4COPA 3G1GA 5HGOA 1EOQA 5HGNA 4U0CA 3G29A 4IPYA 1EIAA 3H47A 4PH1A 4U0EA 1A43A 5HGLA 4COCA 2JYGA
chains in the Genus database with same CATH superfamily
5CZDB 3DS3A 3DS2A 2XXMA 1ZMBA 3CMEP 4BPFA 2QNWA 2MY5A 2KOPA 2PENA 2M8NA 3CD6P 3CCMP 2PEKA 1YJNP 2DNWA 2ONTA 2P9XA 3VRLC 2MVVA 5F2OA 2KGAA 2QEXP 3P05A 3CCEP 2EHTA 4M0IA 2M8LA 2PEOA 1W2BO 3DS1A 2N6YA 3CC7P 1L0HA 3GJNA 1X3OA 2FACA 2LTEA 3CCRP 2K0XA 2Z45A 3CC4P 4CA3A 2CNRA 3CCSP 2FQ0A 1Z6MA 2FVFA 2KG8A 3CCLP 2KW2A 3I56P 1VQPP 4UHPB 1T8KA 2JU1A 1Q81Q 3MGEA 4R0MA 1A43A 2LIUA 3G0VA 4H2WC 1E0HA 1M74A 2NO8A 3G1IA 1JJ2O 1M6NA 2GDYA 3G6EP 1A8OA 2OTLP 5KP8B 1QVGO 5KP6B 2LMLA 3E2DA 1VQ4P 4F37A 2L9FA 3DPHA 1OR5A 4PWVB 1K8AQ 4U0AA 1N8RQ 2VLPA 3CXCO 2LL8A 4GR6A 5HGMA 2KGEA 4BPGA 2KGCA 1GPJA 2JGPA 2JAZA 2GZJA 2KGDA 2K94A 2MF4A 1VQ7P 2GYKA 3DS4A 4XRQA 5F2NA 3EJDA 1ACPA 1K73Q 2KWLA 4PXHB 1RO2A 4GR2A 3OW2O 2K92A 2KOQA 2MVUA 3CMAP 2EG5A 2CWOA 2KOSA 1KC8Q 5EW5E 3G21A 4PH0A 3GKLC 5BS2A 2AVAA 4XFZA 2OARA 1BXIA 1MZ8A 2Z46A 1IMQA 2XV6A 4XFXA 1RNIA 3GZMA 2EFJA 5DCKA 2GZIA 4IPYA 3CCQP 1RO0A 2JQ4A 2FADA 2KG6A 3HZQA 2GZEA 3CCVP 2BHVA 4XFYA 2LF4A 4IZ6A 4QNBA 2FQ1A 3H4EA 2GDXA 1HY8A 1YIJP 2VLNA 2AF8A 4COCA 1FR2A 4XROA 1ZNVA 1VQ8P 1VQ9P 3H0DA 1K30A 2N50A 1AUMA 4BPHA 2K2QA 4QKOA 2PEQA 2K0YA 3G71P 1Q7YQ 2FHSC 2K0DX 3HYBA 2JO0A 2FAEA 4WYMA 1EMVA 3LRYA 2PY8A 3B4QA 4U0BA 2XZ1C 1AYIA 2FVEA 1EOQA 5HV8A 2GDWA 1M1KQ 5JPAA 3I55P 1VQ5P 1GXGA 1QVFO 2L22A 2L6EA 3RG2A 2ERHA 1DNYA 3G28A 1K9MQ 2JYLA 3G4SP 1QRJA 1GXHA 4COPA 2E1MA 1VQKP 3G29A 5HGLA 2JYGA 3DTJA 3G26A 4U0FA 1IUQA 2EHSA 2JBGA 2N6ZA 2PEIA 2GZFA 1VKUA 3CCJP 1VQOP 2L4BA 4U0DA 2MR8A 4MRTC 2PEMA 2VLOA 3NY7B 1VQLP 1KQSO 1VQNP 5F2KA 3CE7A 1M6EX 1YHQP 3H47A 2GZGA 2MD9A 3DS5A 2KODA 2PEJA 2MR7A 2VSQA 4HKGA 2VLQA 1M90Q 2KR5A 1DV5A 3DS0A 5EJDA 1F80D 4H2YC 2LIWA 1VQ6P 3GZLA 3WBHA 2M5RA 2WPTA 2FVAA 2CQ8A 3CPWO 2FQ2A 1YI2P 2EIAA 1E6JP 3B5IA 4DG9A 1NJIQ 1D1DA 4H2XC 5I4TG 2X2BA 2K5XA 1Q82Q 1EIAA 2OTJP 1S72P 2L0QA 2XT1A 2KOOA 2N5HA 2LOLA 3M1MA 2LKIA 1UJZA 2N5IA 2N98A 2CG5B 1CEIA 2AFEA 2M8PA 2PNGA 1YITP 5HGOA 4U0CA 4PH1A 1KD1Q 1NQ4A 1BAJA 4NEOA 2Z44A 3LMOA 5KP7B 2KG9A 5BS1A 2LPKA 2QA4P 3EJEA 3RG6C 1KLPA 1Q86Q 1VHNA 2AFDA 2CGQA 2K93A 7CEIA 1UNKA 3EJBA 2JU2A 5HVCA 1YJWP 1VQMP 3U43A 3NTEA 3CCUP 2DGYA 1YJ9P 2ROQA 2BUOA 1L0IA 2KORA 1IMPA 1AF8A 1HQBA 2JB0A 3G1GA 2XZ0D 3Q20A 3CC2P 4U0EA 5HGNA
chains in the Genus database with same CATH topology
4XROA 3DS3A 3DS2A 2XXMA 1VQ8P 1VQ9P 1ZMBA 1K30A 3H0DA 1AUMA 3CXCO 3CMEP 4GR6A 1VQ6P 5HGMA 3WBHA 2PENA 2PEQA 2M8NA 3G71P 3CD6P 1Q7YQ 3CPWO 3HYBA 3CCMP 1VQ7P 2JO0A 2PEKA 1YI2P 1YJNP 2EIAA 1E6JP 4WYMA 3B5IA 3LRYA 1NJIQ 1D1DA 3DS4A 2PY8A 2ONTA 4U0BA 4XRQA 2P9XA 3VRLC 5I4TG 1EOQA 5HGNA 5F2OA 1Q82Q 5F2NA 1EIAA 1K73Q 2OTJP 1S72P 2QEXP 3P05A 1M1KQ 2XT1A 5JPAA 3I55P 1RO2A 4GR2A 1VQ5P 3M1MA 3OW2O 3CCEP 1QVFO 2L6EA 1N8RQ 3CMAP 2EG5A 2CWOA 1KC8Q 4M0IA 3G28A 1K9MQ 2JYLA 3G4SP 2M8LA 3G21A 2PEOA 4PH0A 2M8PA 1W2BO 1QRJA 3DS1A 5BS2A 1YITP 4COPA 4XFZA 2E1MA 5HGOA 1VQKP 4U0CA 3G29A 5HGLA 2OARA 4PH1A 3CC7P 1KD1Q 2JYGA 1BAJA 3DTJA 3G26A 2Z44A 4U0FA 1IUQA 2Z46A 3CCRP 2Z45A 3CC4P 5BS1A 2XV6A 3CCSP 2QA4P 2PEIA 3CCJP 1VQOP 4U0DA 3RG6C 4XFXA 3CCLP 1RNIA 3I56P 1Q86Q 2EFJA 2PEMA 1VQPP 1VQLP 1KQSO 1VQNP 5F2KA 1Q81Q 3MGEA 5DCKA 1M6EX 4IPYA 1YHQP 3H47A 1A43A 3CCQP 1YJWP 1VQMP 3DS5A 2KODA 3G0VA 1RO0A 2PEJA 1M74A 3NTEA 3CCUP 3G1IA 1JJ2O 1M6NA 2DGYA 3G6EP 1YJ9P 1A8OA 3HZQA 2OTLP 3CCVP 1QVGO 2BUOA 2BHVA 4XFYA 2LF4A 4QNBA 3E2DA 1VQ4P 3H4EA 1M90Q 3DPHA 3DS0A 1YIJP 3G1GA 3Q20A 3CC2P 4U0EA 1K8AQ 4U0AA 4COCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BAJ A;  4XRO A;  3DS3 A;  3DS2 A;  2XXM A;  2KOD A;  3DS5 A;  3DTJ A;  3G0V A;  3G26 A;  4U0F A;  1AUM A;  3P05 A;  2XT1 A;  5JPA A;  5HGM A;  3NTE A;  3G1I A;  2XV6 A;  2L6E A;  1A8O A;  2M8N A;  4U0A A;  2BUO A;  4XFY A;  4U0D A;  4M0I A;  4XFX A;  2LF4 A;  2JO0 A;  2EIA A;  1E6J P;  3G28 A;  4QNB A;  3LRY A;  4WYM A;  1D1D A;  2JYL A;  3DS4 A;  5I4T G;  2M8L A;  3G21 A;  4PH0 A;  2ONT A;  2M8P A;  3H4E A;  4U0B A;  1QRJ A;  4XRQ A;  3DS1 A;  3DPH A;  3DS0 A;  3VRL C;  3MGE A;  5DCK A;  4XFZ A;  4COP A;  3G1G A;  5HGO A;  1EOQ A;  5HGN A;  4U0C A;  3G29 A;  4IPY A;  1EIA A;  3H47 A;  4PH1 A;  4U0E A;  1A43 A;  5HGL A;  4COC A;  2JYG A; 
#chains in the Genus database with same CATH topology
 5CZD B;  3DS3 A;  3DS2 A;  2XXM A;  1ZMB A;  3CME P;  4BPF A;  2QNW A;  2MY5 A;  2KOP A;  2PEN A;  2M8N A;  3CD6 P;  3CCM P;  2PEK A;  1YJN P;  2DNW A;  2ONT A;  2P9X A;  3VRL C;  2MVV A;  5F2O A;  2KGA A;  2QEX P;  3P05 A;  3CCE P;  2EHT A;  4M0I A;  2M8L A;  2PEO A;  1W2B O;  3DS1 A;  2N6Y A;  3CC7 P;  1L0H A;  3GJN A;  1X3O A;  2FAC A;  2LTE A;  3CCR P;  2K0X A;  2Z45 A;  3CC4 P;  4CA3 A;  2CNR A;  3CCS P;  2FQ0 A;  1Z6M A;  2FVF A;  2KG8 A;  3CCL P;  2KW2 A;  3I56 P;  1VQP P;  4UHP B;  1T8K A;  2JU1 A;  1Q81 Q;  3MGE A;  4R0M A;  1A43 A;  2LIU A;  3G0V A;  4H2W C;  1E0H A;  1M74 A;  2NO8 A;  3G1I A;  1JJ2 O;  1M6N A;  2GDY A;  3G6E P;  1A8O A;  2OTL P;  5KP8 B;  1QVG O;  5KP6 B;  2LML A;  3E2D A;  1VQ4 P;  4F37 A;  2L9F A;  3DPH A;  1OR5 A;  4PWV B;  1K8A Q;  4U0A A;  1N8R Q;  2VLP A;  3CXC O;  2LL8 A;  4GR6 A;  5HGM A;  2KGE A;  4BPG A;  2KGC A;  1GPJ A;  2JGP A;  2JAZ A;  2GZJ A;  2KGD A;  2K94 A;  2MF4 A;  1VQ7 P;  2GYK A;  3DS4 A;  4XRQ A;  5F2N A;  3EJD A;  1ACP A;  1K73 Q;  2KWL A;  4PXH B;  1RO2 A;  4GR2 A;  3OW2 O;  2K92 A;  2KOQ A;  2MVU A;  3CMA P;  2EG5 A;  2CWO A;  2KOS A;  1KC8 Q;  5EW5 E;  3G21 A;  4PH0 A;  3GKL C;  5BS2 A;  2AVA A;  4XFZ A;  2OAR A;  1BXI A;  1MZ8 A;  2Z46 A;  1IMQ A;  2XV6 A;  4XFX A;  1RNI A;  3GZM A;  2EFJ A;  5DCK A;  2GZI A;  4IPY A;  3CCQ P;  1RO0 A;  2JQ4 A;  2FAD A;  2KG6 A;  3HZQ A;  2GZE A;  3CCV P;  2BHV A;  4XFY A;  2LF4 A;  4IZ6 A;  4QNB A;  2FQ1 A;  3H4E A;  2GDX A;  1HY8 A;  1YIJ P;  2VLN A;  2AF8 A;  4COC A;  1FR2 A;  4XRO A;  1ZNV A;  1VQ8 P;  1VQ9 P;  3H0D A;  1K30 A;  2N50 A;  1AUM A;  4BPH A;  2K2Q A;  4QKO A;  2PEQ A;  2K0Y A;  3G71 P;  1Q7Y Q;  2FHS C;  2K0D X;  3HYB A;  2JO0 A;  2FAE A;  4WYM A;  1EMV A;  3LRY A;  2PY8 A;  3B4Q A;  4U0B A;  2XZ1 C;  1AYI A;  2FVE A;  1EOQ A;  5HV8 A;  2GDW A;  1M1K Q;  5JPA A;  3I55 P;  1VQ5 P;  1GXG A;  1QVF O;  2L22 A;  2L6E A;  3RG2 A;  2ERH A;  1DNY A;  3G28 A;  1K9M Q;  2JYL A;  3G4S P;  1QRJ A;  1GXH A;  4COP A;  2E1M A;  1VQK P;  3G29 A;  5HGL A;  2JYG A;  3DTJ A;  3G26 A;  4U0F A;  1IUQ A;  2EHS A;  2JBG A;  2N6Z A;  2PEI A;  2GZF A;  1VKU A;  3CCJ P;  1VQO P;  2L4B A;  4U0D A;  2MR8 A;  4MRT C;  2PEM A;  2VLO A;  3NY7 B;  1VQL P;  1KQS O;  1VQN P;  5F2K A;  3CE7 A;  1M6E X;  1YHQ P;  3H47 A;  2GZG A;  2MD9 A;  3DS5 A;  2KOD A;  2PEJ A;  2MR7 A;  2VSQ A;  4HKG A;  2VLQ A;  1M90 Q;  2KR5 A;  1DV5 A;  3DS0 A;  5EJD A;  1F80 D;  4H2Y C;  2LIW A;  1VQ6 P;  3GZL A;  3WBH A;  2M5R A;  2WPT A;  2FVA A;  2CQ8 A;  3CPW O;  2FQ2 A;  1YI2 P;  2EIA A;  1E6J P;  3B5I A;  4DG9 A;  1NJI Q;  1D1D A;  4H2X C;  5I4T G;  2X2B A;  2K5X A;  1Q82 Q;  1EIA A;  2OTJ P;  1S72 P;  2L0Q A;  2XT1 A;  2KOO A;  2N5H A;  2LOL A;  3M1M A;  2LKI A;  1UJZ A;  2N5I A;  2N98 A;  2CG5 B;  1CEI A;  2AFE A;  2M8P A;  2PNG A;  1YIT P;  5HGO A;  4U0C A;  4PH1 A;  1KD1 Q;  1NQ4 A;  1BAJ A;  4NEO A;  2Z44 A;  3LMO A;  5KP7 B;  2KG9 A;  5BS1 A;  2LPK A;  2QA4 P;  3EJE A;  3RG6 C;  1KLP A;  1Q86 Q;  1VHN A;  2AFD A;  2CGQ A;  2K93 A;  7CEI A;  1UNK A;  3EJB A;  2JU2 A;  5HVC A;  1YJW P;  1VQM P;  3U43 A;  3NTE A;  3CCU P;  2DGY A;  1YJ9 P;  2ROQ A;  2BUO A;  1L0I A;  2KOR A;  1IMP A;  1AF8 A;  1HQB A;  2JB0 A;  3G1G A;  2XZ0 D;  3Q20 A;  3CC2 P;  4U0E A;  5HGN A; 
#chains in the Genus database with same CATH homology
 4XRO A;  3DS3 A;  3DS2 A;  2XXM A;  1VQ8 P;  1VQ9 P;  1ZMB A;  1K30 A;  3H0D A;  1AUM A;  3CXC O;  3CME P;  4GR6 A;  1VQ6 P;  5HGM A;  3WBH A;  2PEN A;  2PEQ A;  2M8N A;  3G71 P;  3CD6 P;  1Q7Y Q;  3CPW O;  3HYB A;  3CCM P;  1VQ7 P;  2JO0 A;  2PEK A;  1YI2 P;  1YJN P;  2EIA A;  1E6J P;  4WYM A;  3B5I A;  3LRY A;  1NJI Q;  1D1D A;  3DS4 A;  2PY8 A;  2ONT A;  4U0B A;  4XRQ A;  2P9X A;  3VRL C;  5I4T G;  1EOQ A;  5HGN A;  5F2O A;  1Q82 Q;  5F2N A;  1EIA A;  1K73 Q;  2OTJ P;  1S72 P;  2QEX P;  3P05 A;  1M1K Q;  2XT1 A;  5JPA A;  3I55 P;  1RO2 A;  4GR2 A;  1VQ5 P;  3M1M A;  3OW2 O;  3CCE P;  1QVF O;  2L6E A;  1N8R Q;  3CMA P;  2EG5 A;  2CWO A;  1KC8 Q;  4M0I A;  3G28 A;  1K9M Q;  2JYL A;  3G4S P;  2M8L A;  3G21 A;  2PEO A;  4PH0 A;  2M8P A;  1W2B O;  1QRJ A;  3DS1 A;  5BS2 A;  1YIT P;  4COP A;  4XFZ A;  2E1M A;  5HGO A;  1VQK P;  4U0C A;  3G29 A;  5HGL A;  2OAR A;  4PH1 A;  3CC7 P;  1KD1 Q;  2JYG A;  1BAJ A;  3DTJ A;  3G26 A;  2Z44 A;  4U0F A;  1IUQ A;  2Z46 A;  3CCR P;  2Z45 A;  3CC4 P;  5BS1 A;  2XV6 A;  3CCS P;  2QA4 P;  2PEI A;  3CCJ P;  1VQO P;  4U0D A;  3RG6 C;  4XFX A;  3CCL P;  1RNI A;  3I56 P;  1Q86 Q;  2EFJ A;  2PEM A;  1VQP P;  1VQL P;  1KQS O;  1VQN P;  5F2K A;  1Q81 Q;  3MGE A;  5DCK A;  1M6E X;  4IPY A;  1YHQ P;  3H47 A;  1A43 A;  3CCQ P;  1YJW P;  1VQM P;  3DS5 A;  2KOD A;  3G0V A;  1RO0 A;  2PEJ A;  1M74 A;  3NTE A;  3CCU P;  3G1I A;  1JJ2 O;  1M6N A;  2DGY A;  3G6E P;  1YJ9 P;  1A8O A;  3HZQ A;  2OTL P;  3CCV P;  1QVG O;  2BUO A;  2BHV A;  4XFY A;  2LF4 A;  4QNB A;  3E2D A;  1VQ4 P;  3H4E A;  1M90 Q;  3DPH A;  3DS0 A;  1YIJ P;  3G1G A;  3Q20 A;  3CC2 P;  4U0E A;  1K8A Q;  4U0A A;  4COC A; 
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