2M5R | Genus

Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	19
sequence length	80
structure length	80
Chain Sequence	MNDVLTRVLEVVKNFEKVDASKVTPESHFVKDLGLNSLDVVEVVFAIEQEFILDIPDHDAEKIQSIPDAVEYIAQNPMAK

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lipid binding protein
source organism	Leishmania major
publication title	NMR structures of the apo- and holo- forms of the acyl carrier protein of Leishmania major rcsb
molecule keywords	Acyl carrier protein
total genus	19
structure length	80
sequence length	80
ec nomenclature
pdb deposition date	2013-03-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00550	PP-binding	Phosphopantetheine attachment site

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1200.10	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A	ACP-like	2m5rA00

4NEOA 3RG2A 1DV5A 2CG5B 2XZ0D 5HVCA 2XZ1C 1ACPA 5KP7B 5CZDB 3EJBA 2K0YA 4H2YC 3EJDA 2EHSA 2FQ1A 2K0XA 1AF8A 2L9FA 2KG6A 2KG8A 2MVVA 2LKIA 2N6YA 2KGDA 2FVAA 2JGPA 2KWLA 3NY7B 3EJEA 2LTEA 2FVEA 1T8KA 2MVUA 2M5RA 5KP6B 2L4BA 2KOSA 2KGCA 4H2WC 2FQ2A 2MR7A 2K93A 2K92A 2DNWA 2LOLA 2N5HA 4R0MA 2KOPA 2MY5A 2K94A 2X2BA 1KLPA 2GDYA 5HV8A 1DNYA 2FQ0A 2CQ8A 2KR5A 2GDXA 2KGEA 3LMOA 2L0QA 2KOOA 2N5IA 4MRTC 4DG9A 1F80D 1L0IA 2LMLA 2K2QA 2VSQA 2MD9A 2PNGA 2KGAA 2EHTA 4PWVB 5EJDA 2GDWA 2CNRA 2AF8A 4BPGA 4BPHA 2LL8A 2KG9A 2AFEA 4IZ6A 2AVAA 2JQ4A 2L22A 4PXHB 5KP8B 1HY8A 4HKGA 2N6ZA 2FHSC 1OR5A 2ROQA 2FADA 2JU1A 2LIWA 2CGQA 2MF4A 2FAEA 3CE7A 1VKUA 3GZLA 2KOQA 4CA3A 1NQ4A 1X3OA 2FVFA 2LPKA 1L0HA 2N50A 2MR8A 2AFDA 2KORA 2QNWA 2LIUA 2FACA 2N98A 4BPFA 1HQBA 2KW2A 3GZMA 2JU2A 4H2XC
chains in the Genus database with same CATH superfamily

1ZMBA 4NEOA 3CMEP 1E6JP 1DV5A 1A43A 1Q7YQ 3E2DA 2GZIA 4U0DA 3CCEP 4H2YC 2EG5A 2EHSA 2BUOA 2BHVA 2KG6A 2EIAA 2PEQA 4F37A 1RO2A 1Q86Q 4XRQA 5JPAA 2PEKA 2KWLA 2LTEA 2FVEA 3DS1A 4XFYA 2M5RA 1K8AQ 4H2WC 3I56P 2JYLA 2MR7A 2K92A 3CC4P 3G1GA 1NJIQ 1KLPA 5DCKA 3VRLC 1EOQA 4PH0A 2FQ0A 1YI2P 3DS0A 1AYIA 2KR5A 2E1MA 1W2BO 1YJ9P 1VQLP 2CNRA 2VLPA 4BPGA 4QNBA 1VQMP 1GXHA 1VQNP 1VQ6P 2JQ4A 2L22A 1MZ8A 2DGYA 4HKGA 2FHSC 5I4TG 3B5IA 2FADA 2CGQA 3CE7A 3GZLA 3CD6P 3CCQP 1X3OA 1L0HA 2AFDA 4U0EA 1Q81Q 2QNWA 3DS5A 2PY8A 1K73Q 2L6EA 3GZMA 1VQ7P 2JO0A 2PEJA 1KD1Q 2CG5B 3H4EA 3G28A 1S72P 1ACPA 5KP7B 2LF4A 4GR2A 1IMQA 1KQSO 1YHQP 1AF8A 2OTJP 1M6NA 1Q82Q 2JBGA 1T8KA 2OARA 1GXGA 3MGEA 2MVUA 5KP6B 2KOSA 1E0HA 2N5HA 4R0MA 2K0DX 3GJNA 3G6EP 1DNYA 1UJZA 2Z44A 2KGEA 3LMOA 3CCVP 3DTJA 2KOOA 1RO0A 1F80D 1YJNP 3DPHA 2PNGA 5EJDA 2GDWA 3B4QA 2EFJA 2M8PA 2JYGA 2AF8A 3GKLC 2XT1A 4BPHA 1CEIA 1RNIA 5BS1A 2AFEA 3NTEA 1M6EX 2GZEA 2M8LA 3CCJP 3CMAP 2MF4A 1VKUA 5F2NA 3H47A 3U43A 2FVFA 2N50A 3M1MA 2FACA 5HGOA 2KW2A 1IMPA 1VHNA 4H2XC 3RG6C 1QVFO 3WBHA 2XZ0D 1VQ9P 5HVCA 2XZ1C 3EJBA 2GZFA 2K0YA 3DS2A 3EJDA 2FQ1A 2L9FA 2KG8A 1M1KQ 3H0DA 2MVVA 2LKIA 2JAZA 2GZGA 2JGPA 3NY7B 3EJEA 1D1DA 1VQ4P 4COPA 2K5XA 1YJWP 2QA4P 3DS3A 2L4BA 3G0VA 2FQ2A 2K93A 4U0BA 3CCLP 7CEIA 2X2BA 3Q20A 2GDYA 2VLOA 1FR2A 5HV8A 2OTLP 5F2KA 2CQ8A 2L0QA 4COCA 1YIJP 3G71P 4DG9A 1L0IA 2K2QA 2VSQA 2GYKA 1UNKA 2EHTA 2Z46A 4GR6A 4IPYA 5HGNA 1M74A 2QEXP 2LL8A 3DS4A 2NO8A 1K30A 2VLNA 3HYBA 2AVAA 4PXHB 3G26A 3CCRP 1HY8A 1IUQA 1EIAA 1EMVA 1OR5A 2ROQA 1Z6MA 2JU1A 4QKOA 2FAEA 4XFXA 2XV6A 2KOQA 2PEIA 2LPKA 1KC8Q 2XXMA 2CWOA 2PEMA 2JU2A 3LRYA 2P9XA 3RG2A 1ZNVA 1GPJA 5CZDB 1VQ5P 5EW5E 4UHPB 2K0XA 5HGLA 1VQOP 2N6YA 1VQKP 2KGDA 1M90Q 3HZQA 2FVAA 3G29A 2Z45A 3CCSP 4U0AA 2GZJA 3CXCO 2KGCA 1VQPP 2DNWA 1QVGO 2LOLA 3P05A 4U0FA 2VLQA 3G4SP 2KOPA 2MY5A 2K94A 3CPWO 2GDXA 2N5IA 4MRTC 1JJ2O 2LMLA 2MD9A 1A8OA 2PEOA 2KGAA 1BXIA 3G1IA 4PWVB 4XFZA 1AUMA 2ONTA 3CCMP 2KODA 3CCUP 2KG9A 4IZ6A 3CC2P 2JB0A 2ERHA 1VQ8P 5KP8B 1K9MQ 3CC7P 1N8RQ 2N6ZA 4M0IA 2PENA 2LIWA 1QRJA 4PH1A 1YITP 4CA3A 1NQ4A 3I55P 3G21A 5BS2A 1BAJA 2MR8A 3OW2O 2KORA 2LIUA 4U0CA 2M8NA 2N98A 4WYMA 4BPFA 1HQBA 4XROA 2WPTA 5HGMA 5F2OA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4NEO A;  3RG2 A;  1DV5 A;  2CG5 B;  2XZ0 D;  5HVC A;  2XZ1 C;  1ACP A;  5KP7 B;  5CZD B;  3EJB A;  2K0Y A;  4H2Y C;  3EJD A;  2EHS A;  2FQ1 A;  2K0X A;  1AF8 A;  2L9F A;  2KG6 A;  2KG8 A;  2MVV A;  2LKI A;  2N6Y A;  2KGD A;  2FVA A;  2JGP A;  2KWL A;  3NY7 B;  3EJE A;  2LTE A;  2FVE A;  1T8K A;  2MVU A;  2M5R A;  5KP6 B;  2L4B A;  2KOS A;  2KGC A;  4H2W C;  2FQ2 A;  2MR7 A;  2K93 A;  2K92 A;  2DNW A;  2LOL A;  2N5H A;  4R0M A;  2KOP A;  2MY5 A;  2K94 A;  2X2B A;  1KLP A;  2GDY A;  5HV8 A;  1DNY A;  2FQ0 A;  2CQ8 A;  2KR5 A;  2GDX A;  2KGE A;  3LMO A;  2L0Q A;  2KOO A;  2N5I A;  4MRT C;  4DG9 A;  1F80 D;  1L0I A;  2LML A;  2K2Q A;  2VSQ A;  2MD9 A;  2PNG A;  2KGA A;  2EHT A;  4PWV B;  5EJD A;  2GDW A;  2CNR A;  2AF8 A;  4BPG A;  4BPH A;  2LL8 A;  2KG9 A;  2AFE A;  4IZ6 A;  2AVA A;  2JQ4 A;  2L22 A;  4PXH B;  5KP8 B;  1HY8 A;  4HKG A;  2N6Z A;  2FHS C;  1OR5 A;  2ROQ A;  2FAD A;  2JU1 A;  2LIW A;  2CGQ A;  2MF4 A;  2FAE A;  3CE7 A;  1VKU A;  3GZL A;  2KOQ A;  4CA3 A;  1NQ4 A;  1X3O A;  2FVF A;  2LPK A;  1L0H A;  2N50 A;  2MR8 A;  2AFD A;  2KOR A;  2QNW A;  2LIU A;  2FAC A;  2N98 A;  4BPF A;  1HQB A;  2KW2 A;  3GZM A;  2JU2 A;  4H2X C; 
#chains in the Genus database with same CATH topology
 1ZMB A;  4NEO A;  3CME P;  1E6J P;  1DV5 A;  1A43 A;  1Q7Y Q;  3E2D A;  2GZI A;  4U0D A;  3CCE P;  4H2Y C;  2EG5 A;  2EHS A;  2BUO A;  2BHV A;  2KG6 A;  2EIA A;  2PEQ A;  4F37 A;  1RO2 A;  1Q86 Q;  4XRQ A;  5JPA A;  2PEK A;  2KWL A;  2LTE A;  2FVE A;  3DS1 A;  4XFY A;  2M5R A;  1K8A Q;  4H2W C;  3I56 P;  2JYL A;  2MR7 A;  2K92 A;  3CC4 P;  3G1G A;  1NJI Q;  1KLP A;  5DCK A;  3VRL C;  1EOQ A;  4PH0 A;  2FQ0 A;  1YI2 P;  3DS0 A;  1AYI A;  2KR5 A;  2E1M A;  1W2B O;  1YJ9 P;  1VQL P;  2CNR A;  2VLP A;  4BPG A;  4QNB A;  1VQM P;  1GXH A;  1VQN P;  1VQ6 P;  2JQ4 A;  2L22 A;  1MZ8 A;  2DGY A;  4HKG A;  2FHS C;  5I4T G;  3B5I A;  2FAD A;  2CGQ A;  3CE7 A;  3GZL A;  3CD6 P;  3CCQ P;  1X3O A;  1L0H A;  2AFD A;  4U0E A;  1Q81 Q;  2QNW A;  3DS5 A;  2PY8 A;  1K73 Q;  2L6E A;  3GZM A;  1VQ7 P;  2JO0 A;  2PEJ A;  1KD1 Q;  2CG5 B;  3H4E A;  3G28 A;  1S72 P;  1ACP A;  5KP7 B;  2LF4 A;  4GR2 A;  1IMQ A;  1KQS O;  1YHQ P;  1AF8 A;  2OTJ P;  1M6N A;  1Q82 Q;  2JBG A;  1T8K A;  2OAR A;  1GXG A;  3MGE A;  2MVU A;  5KP6 B;  2KOS A;  1E0H A;  2N5H A;  4R0M A;  2K0D X;  3GJN A;  3G6E P;  1DNY A;  1UJZ A;  2Z44 A;  2KGE A;  3LMO A;  3CCV P;  3DTJ A;  2KOO A;  1RO0 A;  1F80 D;  1YJN P;  3DPH A;  2PNG A;  5EJD A;  2GDW A;  3B4Q A;  2EFJ A;  2M8P A;  2JYG A;  2AF8 A;  3GKL C;  2XT1 A;  4BPH A;  1CEI A;  1RNI A;  5BS1 A;  2AFE A;  3NTE A;  1M6E X;  2GZE A;  2M8L A;  3CCJ P;  3CMA P;  2MF4 A;  1VKU A;  5F2N A;  3H47 A;  3U43 A;  2FVF A;  2N50 A;  3M1M A;  2FAC A;  5HGO A;  2KW2 A;  1IMP A;  1VHN A;  4H2X C;  3RG6 C;  1QVF O;  3WBH A;  2XZ0 D;  1VQ9 P;  5HVC A;  2XZ1 C;  3EJB A;  2GZF A;  2K0Y A;  3DS2 A;  3EJD A;  2FQ1 A;  2L9F A;  2KG8 A;  1M1K Q;  3H0D A;  2MVV A;  2LKI A;  2JAZ A;  2GZG A;  2JGP A;  3NY7 B;  3EJE A;  1D1D A;  1VQ4 P;  4COP A;  2K5X A;  1YJW P;  2QA4 P;  3DS3 A;  2L4B A;  3G0V A;  2FQ2 A;  2K93 A;  4U0B A;  3CCL P;  7CEI A;  2X2B A;  3Q20 A;  2GDY A;  2VLO A;  1FR2 A;  5HV8 A;  2OTL P;  5F2K A;  2CQ8 A;  2L0Q A;  4COC A;  1YIJ P;  3G71 P;  4DG9 A;  1L0I A;  2K2Q A;  2VSQ A;  2GYK A;  1UNK A;  2EHT A;  2Z46 A;  4GR6 A;  4IPY A;  5HGN A;  1M74 A;  2QEX P;  2LL8 A;  3DS4 A;  2NO8 A;  1K30 A;  2VLN A;  3HYB A;  2AVA A;  4PXH B;  3G26 A;  3CCR P;  1HY8 A;  1IUQ A;  1EIA A;  1EMV A;  1OR5 A;  2ROQ A;  1Z6M A;  2JU1 A;  4QKO A;  2FAE A;  4XFX A;  2XV6 A;  2KOQ A;  2PEI A;  2LPK A;  1KC8 Q;  2XXM A;  2CWO A;  2PEM A;  2JU2 A;  3LRY A;  2P9X A;  3RG2 A;  1ZNV A;  1GPJ A;  5CZD B;  1VQ5 P;  5EW5 E;  4UHP B;  2K0X A;  5HGL A;  1VQO P;  2N6Y A;  1VQK P;  2KGD A;  1M90 Q;  3HZQ A;  2FVA A;  3G29 A;  2Z45 A;  3CCS P;  4U0A A;  2GZJ A;  3CXC O;  2KGC A;  1VQP P;  2DNW A;  1QVG O;  2LOL A;  3P05 A;  4U0F A;  2VLQ A;  3G4S P;  2KOP A;  2MY5 A;  2K94 A;  3CPW O;  2GDX A;  2N5I A;  4MRT C;  1JJ2 O;  2LML A;  2MD9 A;  1A8O A;  2PEO A;  2KGA A;  1BXI A;  3G1I A;  4PWV B;  4XFZ A;  1AUM A;  2ONT A;  3CCM P;  2KOD A;  3CCU P;  2KG9 A;  4IZ6 A;  3CC2 P;  2JB0 A;  2ERH A;  1VQ8 P;  5KP8 B;  1K9M Q;  3CC7 P;  1N8R Q;  2N6Z A;  4M0I A;  2PEN A;  2LIW A;  1QRJ A;  4PH1 A;  1YIT P;  4CA3 A;  1NQ4 A;  3I55 P;  3G21 A;  5BS2 A;  1BAJ A;  2MR8 A;  3OW2 O;  2KOR A;  2LIU A;  4U0C A;  2M8N A;  2N98 A;  4WYM A;  4BPF A;  1HQB A;  4XRO A;  2WPT A;  5HGM A;  5F2O A; 
#chains in the Genus database with same CATH homology
 4NEO A;  3RG2 A;  1DV5 A;  2CG5 B;  2XZ0 D;  5HVC A;  2XZ1 C;  1ACP A;  5KP7 B;  5CZD B;  3EJB A;  2K0Y A;  4H2Y C;  3EJD A;  2EHS A;  2FQ1 A;  2K0X A;  1AF8 A;  2L9F A;  2KG6 A;  2KG8 A;  2MVV A;  2LKI A;  2N6Y A;  2KGD A;  2FVA A;  2JGP A;  2KWL A;  3NY7 B;  3EJE A;  2LTE A;  2FVE A;  1T8K A;  2MVU A;  2M5R A;  5KP6 B;  2L4B A;  2KOS A;  2KGC A;  4H2W C;  2FQ2 A;  2MR7 A;  2K93 A;  2K92 A;  2DNW A;  2LOL A;  2N5H A;  4R0M A;  2KOP A;  2MY5 A;  2K94 A;  2X2B A;  1KLP A;  2GDY A;  5HV8 A;  1DNY A;  2FQ0 A;  2CQ8 A;  2KR5 A;  2GDX A;  2KGE A;  3LMO A;  2L0Q A;  2KOO A;  2N5I A;  4MRT C;  4DG9 A;  1F80 D;  1L0I A;  2LML A;  2K2Q A;  2VSQ A;  2MD9 A;  2PNG A;  2KGA A;  2EHT A;  4PWV B;  5EJD A;  2GDW A;  2CNR A;  2AF8 A;  4BPG A;  4BPH A;  2LL8 A;  2KG9 A;  2AFE A;  4IZ6 A;  2AVA A;  2JQ4 A;  2L22 A;  4PXH B;  5KP8 B;  1HY8 A;  4HKG A;  2N6Z A;  2FHS C;  1OR5 A;  2ROQ A;  2FAD A;  2JU1 A;  2LIW A;  2CGQ A;  2MF4 A;  2FAE A;  3CE7 A;  1VKU A;  3GZL A;  2KOQ A;  4CA3 A;  1NQ4 A;  1X3O A;  2FVF A;  2LPK A;  1L0H A;  2N50 A;  2MR8 A;  2AFD A;  2KOR A;  2QNW A;  2LIU A;  2FAC A;  2N98 A;  4BPF A;  1HQB A;  2KW2 A;  3GZM A;  2JU2 A;  4H2X C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2M5RA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations