2MR8 | Genus

Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	25
sequence length	91
structure length	91
Chain Sequence	GAMAKAPESATEKVLCALYAEILGVERVGVDDAFHDLGGSSALAMRLIARIREELGVDLPIRQLFSSPTPAGVARALAAKSASWSHPQFEK

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Biosynthetic protein
source organism	Actinoplanes teichomyceticus
publication title	Structure of the terminal PCP domain of the non-ribosomal peptide synthetase in teicoplanin biosynthesis. pubmed doi rcsb
molecule keywords	Non-ribosomal peptide synthetase
total genus	25
structure length	91
sequence length	91
ec nomenclature
pdb deposition date	2014-07-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00550	PP-binding	Phosphopantetheine attachment site

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1200.10	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A	ACP-like	2mr8A00

2X2BA 2KW2A 2K2QA 2CNRA 2JU1A 2L4BA 2QNWA 3CE7A 2M5RA 2AVAA 2FVEA 2N50A 3EJDA 2GDYA 4CA3A 2MY5A 1VKUA 1OR5A 2LIWA 2MR8A 2KORA 4BPHA 2LL8A 2GDWA 2CQ8A 2MF4A 3GZLA 2VSQA 2N5IA 2CGQA 2N6ZA 3GZMA 1DV5A 1HY8A 5KP7B 4BPGA 2KWLA 3LMOA 1NQ4A 2JU2A 2JGPA 2K92A 1AF8A 3RG2A 2JQ4A 1DNYA 2KOSA 2AF8A 2FADA 2K0YA 2KGDA 4BPFA 4MRTC 2FHSC 1F80D 1HQBA 2PNGA 1L0IA 2KGAA 4IZ6A 2K94A 1ACPA 2N5HA 5HV8A 4H2YC 2EHTA 2KG9A 4R0MA 5KP8B 2LKIA 4H2WC 2KG6A 2N98A 4H2XC 4PWVB 2AFEA 2ROQA 1X3OA 2L9FA 2FVFA 2MVVA 4DG9A 2KOQA 2KR5A 2FQ0A 4NEOA 4PXHB 2L22A 2XZ0D 5HVCA 2AFDA 3EJEA 2MR7A 2N6YA 2FACA 2LMLA 2LOLA 2FVAA 2EHSA 2MD9A 5KP6B 2KG8A 3EJBA 2K93A 2FAEA 2KOPA 2CG5B 2LPKA 2XZ1C 1L0HA 5EJDA 2KGCA 5CZDB 2FQ1A 2KOOA 2K0XA 2FQ2A 1T8KA 4HKGA 1KLPA 2LTEA 2LIUA 2KGEA 3NY7B 2GDXA 2MVUA 2DNWA 2L0QA
chains in the Genus database with same CATH superfamily

2KW2A 1YIJP 1M74A 2CNRA 2VLNA 2L6EA 3DS3A 4XROA 2PEJA 2Z44A 4CA3A 1OR5A 1VQ6P 2Z46A 2VSQA 4XFYA 1Q82Q 3DS4A 4GR2A 1Z6MA 2JU2A 3P05A 2JGPA 3CXCO 1AF8A 3RG2A 1JJ2O 3WBHA 4COCA 2OTLP 2JYGA 1DNYA 4BPFA 1YJNP 3B5IA 3Q20A 3DS1A 1L0IA 4PH1A 5F2KA 4XFXA 1ACPA 1K30A 2EIAA 2N5HA 5HV8A 3I55P 3CCEP 1D1DA 1ZNVA 1M90Q 1RO2A 2LKIA 1A43A 5F2OA 2KG6A 4PWVB 1Q7YQ 2AFEA 2JBGA 2ERHA 2L9FA 3DTJA 1E0HA 5HGMA 3CPWO 1EMVA 4PH0A 3G26A 2XZ0D 1IUQA 2VLOA 2AFDA 1IMPA 2KG8A 3LRYA 2PENA 2PY8A 2CG5B 1VQ8P 1L0HA 2GZGA 1KC8Q 3NTEA 5EJDA 2KGCA 5CZDB 2P9XA 3M1MA 4QKOA 4U0BA 5HGNA 3NY7B 2DNWA 3VRLC 3DPHA 2GYKA 2K2QA 2JU1A 2L4BA 2XXMA 1MZ8A 3CCSP 2AVAA 2FVEA 4U0AA 3H47A 2MY5A 1ZMBA 3OW2O 2GDWA 2CQ8A 2N5IA 1VQPP 1HY8A 1YI2P 1M1KQ 3LMOA 2M8PA 1IMQA 3CCUP 1QVFO 2KOSA 3CMAP 1VHNA 2OARA 2PEKA 4XFZA 2BHVA 2FHSC 1HQBA 2M8LA 2PEIA 2PEQA 1Q81Q 1VQKP 1RO0A 5I4TG 3E2DA 1S72P 4H2YC 2EHTA 4R0MA 1QRJA 5EW5E 3DS5A 4H2WC 2NO8A 4H2XC 3DS2A 5DCKA 1X3OA 2E1MA 4DG9A 1K73Q 1EOQA 2PEMA 2FQ0A 1M6EX 2GZJA 2QEXP 4WYMA 2MR7A 2FVAA 5HGLA 2MD9A 1VQ5P 5BS1A 1VQOP 2PEOA 3EJBA 1YJWP 2KODA 1FR2A 2VLPA 2XZ1C 4U0EA 2BUOA 2EG5A 2M8NA 1VQNP 2ONTA 3CCQP 1K9MQ 3G0VA 2LTEA 2KGEA 2GDXA 2DGYA 2X2BA 2QNWA 3G21A 2N50A 2GDYA 4F37A 2KORA 4BPHA 2GZEA 2MF4A 1VQLP 4UHPB 1A8OA 2CGQA 3GZMA 5KP7B 4BPGA 2KWLA 1BAJA 4GR6A 3G71P 2JQ4A 2FADA 2K0YA 3HZQA 4MRTC 1VQMP 4IZ6A 3G29A 2KG9A 3G1GA 3CMEP 2EFJA 3CCJP 2N98A 2QA4P 1RNIA 2JYLA 2GZIA 3CD6P 2FVFA 2MVVA 3CC4P 3B4QA 2L22A 5HVCA 5F2NA 3EJEA 7CEIA 2N6YA 2FACA 3I56P 2LMLA 2LOLA 1GXGA 4U0FA 1K8AQ 2FAEA 3GJNA 1AYIA 2VLQA 2LPKA 1CEIA 3DS0A 2KOOA 1UJZA 2FQ2A 3CCVP 1T8KA 1VQ4P 2JO0A 3H0DA 1GXHA 2LF4A 2GZFA 5BS2A 3CC7P 3CE7A 4QNBA 2M5RA 1VQ9P 3GKLC 3EJDA 1VKUA 1NJIQ 2LIWA 2MR8A 2LL8A 3G28A 3GZLA 2N6ZA 1DV5A 2WPTA 1NQ4A 4U0DA 4IPYA 3G6EP 1AUMA 5HGOA 2K92A 3U43A 1YITP 2K0DX 1KQSO 2AF8A 2KGDA 3CCMP 1F80D 1UNKA 2PNGA 2KGAA 2OTJP 1W2BO 2K94A 4U0CA 3CCRP 1BXIA 5KP8B 3H4EA 2ROQA 3G1IA 4XRQA 3CC2P 2XV6A 3CCLP 2KOQA 2KR5A 4NEOA 1M6NA 4PXHB 5JPAA 2JB0A 3HYBA 1E6JP 3RG6C 1QVGO 1Q86Q 1YHQP 5KP6B 1KD1Q 2CWOA 2EHSA 1VQ7P 1GPJA 4M0IA 1YJ9P 2XT1A 2Z45A 2JAZA 4COPA 2K93A 2KOPA 1EIAA 2FQ1A 3MGEA 2K5XA 2K0XA 3G4SP 1N8RQ 4HKGA 1KLPA 2LIUA 2MVUA 2L0QA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2X2B A;  2KW2 A;  2K2Q A;  2CNR A;  2JU1 A;  2L4B A;  2QNW A;  3CE7 A;  2M5R A;  2AVA A;  2FVE A;  2N50 A;  3EJD A;  2GDY A;  4CA3 A;  2MY5 A;  1VKU A;  1OR5 A;  2LIW A;  2MR8 A;  2KOR A;  4BPH A;  2LL8 A;  2GDW A;  2CQ8 A;  2MF4 A;  3GZL A;  2VSQ A;  2N5I A;  2CGQ A;  2N6Z A;  3GZM A;  1DV5 A;  1HY8 A;  5KP7 B;  4BPG A;  2KWL A;  3LMO A;  1NQ4 A;  2JU2 A;  2JGP A;  2K92 A;  1AF8 A;  3RG2 A;  2JQ4 A;  1DNY A;  2KOS A;  2AF8 A;  2FAD A;  2K0Y A;  2KGD A;  4BPF A;  4MRT C;  2FHS C;  1F80 D;  1HQB A;  2PNG A;  1L0I A;  2KGA A;  4IZ6 A;  2K94 A;  1ACP A;  2N5H A;  5HV8 A;  4H2Y C;  2EHT A;  2KG9 A;  4R0M A;  5KP8 B;  2LKI A;  4H2W C;  2KG6 A;  2N98 A;  4H2X C;  4PWV B;  2AFE A;  2ROQ A;  1X3O A;  2L9F A;  2FVF A;  2MVV A;  4DG9 A;  2KOQ A;  2KR5 A;  2FQ0 A;  4NEO A;  4PXH B;  2L22 A;  2XZ0 D;  5HVC A;  2AFD A;  3EJE A;  2MR7 A;  2N6Y A;  2FAC A;  2LML A;  2LOL A;  2FVA A;  2EHS A;  2MD9 A;  5KP6 B;  2KG8 A;  3EJB A;  2K93 A;  2FAE A;  2KOP A;  2CG5 B;  2LPK A;  2XZ1 C;  1L0H A;  5EJD A;  2KGC A;  5CZD B;  2FQ1 A;  2KOO A;  2K0X A;  2FQ2 A;  1T8K A;  4HKG A;  1KLP A;  2LTE A;  2LIU A;  2KGE A;  3NY7 B;  2GDX A;  2MVU A;  2DNW A;  2L0Q A; 
#chains in the Genus database with same CATH topology
 2KW2 A;  1YIJ P;  1M74 A;  2CNR A;  2VLN A;  2L6E A;  3DS3 A;  4XRO A;  2PEJ A;  2Z44 A;  4CA3 A;  1OR5 A;  1VQ6 P;  2Z46 A;  2VSQ A;  4XFY A;  1Q82 Q;  3DS4 A;  4GR2 A;  1Z6M A;  2JU2 A;  3P05 A;  2JGP A;  3CXC O;  1AF8 A;  3RG2 A;  1JJ2 O;  3WBH A;  4COC A;  2OTL P;  2JYG A;  1DNY A;  4BPF A;  1YJN P;  3B5I A;  3Q20 A;  3DS1 A;  1L0I A;  4PH1 A;  5F2K A;  4XFX A;  1ACP A;  1K30 A;  2EIA A;  2N5H A;  5HV8 A;  3I55 P;  3CCE P;  1D1D A;  1ZNV A;  1M90 Q;  1RO2 A;  2LKI A;  1A43 A;  5F2O A;  2KG6 A;  4PWV B;  1Q7Y Q;  2AFE A;  2JBG A;  2ERH A;  2L9F A;  3DTJ A;  1E0H A;  5HGM A;  3CPW O;  1EMV A;  4PH0 A;  3G26 A;  2XZ0 D;  1IUQ A;  2VLO A;  2AFD A;  1IMP A;  2KG8 A;  3LRY A;  2PEN A;  2PY8 A;  2CG5 B;  1VQ8 P;  1L0H A;  2GZG A;  1KC8 Q;  3NTE A;  5EJD A;  2KGC A;  5CZD B;  2P9X A;  3M1M A;  4QKO A;  4U0B A;  5HGN A;  3NY7 B;  2DNW A;  3VRL C;  3DPH A;  2GYK A;  2K2Q A;  2JU1 A;  2L4B A;  2XXM A;  1MZ8 A;  3CCS P;  2AVA A;  2FVE A;  4U0A A;  3H47 A;  2MY5 A;  1ZMB A;  3OW2 O;  2GDW A;  2CQ8 A;  2N5I A;  1VQP P;  1HY8 A;  1YI2 P;  1M1K Q;  3LMO A;  2M8P A;  1IMQ A;  3CCU P;  1QVF O;  2KOS A;  3CMA P;  1VHN A;  2OAR A;  2PEK A;  4XFZ A;  2BHV A;  2FHS C;  1HQB A;  2M8L A;  2PEI A;  2PEQ A;  1Q81 Q;  1VQK P;  1RO0 A;  5I4T G;  3E2D A;  1S72 P;  4H2Y C;  2EHT A;  4R0M A;  1QRJ A;  5EW5 E;  3DS5 A;  4H2W C;  2NO8 A;  4H2X C;  3DS2 A;  5DCK A;  1X3O A;  2E1M A;  4DG9 A;  1K73 Q;  1EOQ A;  2PEM A;  2FQ0 A;  1M6E X;  2GZJ A;  2QEX P;  4WYM A;  2MR7 A;  2FVA A;  5HGL A;  2MD9 A;  1VQ5 P;  5BS1 A;  1VQO P;  2PEO A;  3EJB A;  1YJW P;  2KOD A;  1FR2 A;  2VLP A;  2XZ1 C;  4U0E A;  2BUO A;  2EG5 A;  2M8N A;  1VQN P;  2ONT A;  3CCQ P;  1K9M Q;  3G0V A;  2LTE A;  2KGE A;  2GDX A;  2DGY A;  2X2B A;  2QNW A;  3G21 A;  2N50 A;  2GDY A;  4F37 A;  2KOR A;  4BPH A;  2GZE A;  2MF4 A;  1VQL P;  4UHP B;  1A8O A;  2CGQ A;  3GZM A;  5KP7 B;  4BPG A;  2KWL A;  1BAJ A;  4GR6 A;  3G71 P;  2JQ4 A;  2FAD A;  2K0Y A;  3HZQ A;  4MRT C;  1VQM P;  4IZ6 A;  3G29 A;  2KG9 A;  3G1G A;  3CME P;  2EFJ A;  3CCJ P;  2N98 A;  2QA4 P;  1RNI A;  2JYL A;  2GZI A;  3CD6 P;  2FVF A;  2MVV A;  3CC4 P;  3B4Q A;  2L22 A;  5HVC A;  5F2N A;  3EJE A;  7CEI A;  2N6Y A;  2FAC A;  3I56 P;  2LML A;  2LOL A;  1GXG A;  4U0F A;  1K8A Q;  2FAE A;  3GJN A;  1AYI A;  2VLQ A;  2LPK A;  1CEI A;  3DS0 A;  2KOO A;  1UJZ A;  2FQ2 A;  3CCV P;  1T8K A;  1VQ4 P;  2JO0 A;  3H0D A;  1GXH A;  2LF4 A;  2GZF A;  5BS2 A;  3CC7 P;  3CE7 A;  4QNB A;  2M5R A;  1VQ9 P;  3GKL C;  3EJD A;  1VKU A;  1NJI Q;  2LIW A;  2MR8 A;  2LL8 A;  3G28 A;  3GZL A;  2N6Z A;  1DV5 A;  2WPT A;  1NQ4 A;  4U0D A;  4IPY A;  3G6E P;  1AUM A;  5HGO A;  2K92 A;  3U43 A;  1YIT P;  2K0D X;  1KQS O;  2AF8 A;  2KGD A;  3CCM P;  1F80 D;  1UNK A;  2PNG A;  2KGA A;  2OTJ P;  1W2B O;  2K94 A;  4U0C A;  3CCR P;  1BXI A;  5KP8 B;  3H4E A;  2ROQ A;  3G1I A;  4XRQ A;  3CC2 P;  2XV6 A;  3CCL P;  2KOQ A;  2KR5 A;  4NEO A;  1M6N A;  4PXH B;  5JPA A;  2JB0 A;  3HYB A;  1E6J P;  3RG6 C;  1QVG O;  1Q86 Q;  1YHQ P;  5KP6 B;  1KD1 Q;  2CWO A;  2EHS A;  1VQ7 P;  1GPJ A;  4M0I A;  1YJ9 P;  2XT1 A;  2Z45 A;  2JAZ A;  4COP A;  2K93 A;  2KOP A;  1EIA A;  2FQ1 A;  3MGE A;  2K5X A;  2K0X A;  3G4S P;  1N8R Q;  4HKG A;  1KLP A;  2LIU A;  2MVU A;  2L0Q A; 
#chains in the Genus database with same CATH homology
 2X2B A;  2KW2 A;  2K2Q A;  2CNR A;  2JU1 A;  2L4B A;  2QNW A;  3CE7 A;  2M5R A;  2AVA A;  2FVE A;  2N50 A;  3EJD A;  2GDY A;  4CA3 A;  2MY5 A;  1VKU A;  1OR5 A;  2LIW A;  2MR8 A;  2KOR A;  4BPH A;  2LL8 A;  2GDW A;  2CQ8 A;  2MF4 A;  3GZL A;  2VSQ A;  2N5I A;  2CGQ A;  2N6Z A;  3GZM A;  1DV5 A;  1HY8 A;  5KP7 B;  4BPG A;  2KWL A;  3LMO A;  1NQ4 A;  2JU2 A;  2JGP A;  2K92 A;  1AF8 A;  3RG2 A;  2JQ4 A;  1DNY A;  2KOS A;  2AF8 A;  2FAD A;  2K0Y A;  2KGD A;  4BPF A;  4MRT C;  2FHS C;  1F80 D;  1HQB A;  2PNG A;  1L0I A;  2KGA A;  4IZ6 A;  2K94 A;  1ACP A;  2N5H A;  5HV8 A;  4H2Y C;  2EHT A;  2KG9 A;  4R0M A;  5KP8 B;  2LKI A;  4H2W C;  2KG6 A;  2N98 A;  4H2X C;  4PWV B;  2AFE A;  2ROQ A;  1X3O A;  2L9F A;  2FVF A;  2MVV A;  4DG9 A;  2KOQ A;  2KR5 A;  2FQ0 A;  4NEO A;  4PXH B;  2L22 A;  2XZ0 D;  5HVC A;  2AFD A;  3EJE A;  2MR7 A;  2N6Y A;  2FAC A;  2LML A;  2LOL A;  2FVA A;  2EHS A;  2MD9 A;  5KP6 B;  2KG8 A;  3EJB A;  2K93 A;  2FAE A;  2KOP A;  2CG5 B;  2LPK A;  2XZ1 C;  1L0H A;  5EJD A;  2KGC A;  5CZD B;  2FQ1 A;  2KOO A;  2K0X A;  2FQ2 A;  1T8K A;  4HKG A;  1KLP A;  2LTE A;  2LIU A;  2KGE A;  3NY7 B;  2GDX A;  2MVU A;  2DNW A;  2L0Q A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2MR8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations