2ONT | Genus

Total Genus 22

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	22
sequence length	73
structure length	73
Chain Sequence	TSILDIRQGPKEPFRDYVDRFYKTLRAEQSQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGV

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Viral protein
source organism	Human immunodeficiency virus type 1 (new york-5 isolate)
publication title	Domain-swapped dimerization of the HIV-1 capsid C-terminal domain pubmed doi rcsb
molecule keywords	Capsid protein p24
total genus	22
structure length	73
sequence length	73
ec nomenclature
pdb deposition date	2007-01-24

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1200.30	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A	2ontA01

2JYGA 4XFZA 5HGLA 3DS5A 2JO0A 3DS4A 1EIAA 1BAJA 3G29A 2KODA 3MGEA 3VRLC 3DS2A 2M8LA 4COPA 2ONTA 4M0IA 5HGOA 1QRJA 3G28A 4U0EA 4U0BA 1D1DA 5DCKA 3LRYA 4IPYA 3G0VA 2BUOA 2XT1A 3DPHA 2LF4A 3DS1A 3G21A 4WYMA 5JPAA 2M8PA 3G1IA 4QNBA 5HGMA 4XRQA 4XFXA 4U0FA 5HGNA 3DS3A 4XFYA 1EOQA 2EIAA 2XV6A 4U0DA 1A8OA 3H47A 2JYLA 3H4EA 4PH0A 2L6EA 5I4TG 3P05A 3G26A 3NTEA 1AUMA 3DTJA 1A43A 3DS0A 3G1GA 4U0AA 2M8NA 4XROA 4COCA 2XXMA 4U0CA 4PH1A 1E6JP
chains in the Genus database with same CATH superfamily

1YITP 2JYGA 2FHSC 2N50A 2KG8A 5HGOA 2EG5A 1ZMBA 2L0QA 2QNWA 2KW2A 3G4SP 3CD6P 1N8RQ 3P05A 1AUMA 2VSQA 3CCMP 3EJDA 1K30A 4XROA 2M8NA 1FR2A 3GZMA 3G29A 3CCRP 3RG2A 2GDXA 1K9MQ 2QEXP 1KQSO 2FQ1A 2M5RA 1GXHA 2PEOA 2DGYA 2CGQA 3U43A 2EHSA 1QVGO 4U0AA 1GXGA 1RO0A 2LTEA 2JO0A 2GZEA 5KP8B 1L0HA 2VLOA 5DCKA 4IPYA 1AYIA 1HQBA 3WBHA 2Z46A 5BS1A 2OARA 4XRQA 4DG9A 3DS3A 3CCQP 2FADA 1VQ5P 3H47A 2JYLA 3HYBA 3DS0A 2LOLA 1VQKP 2N5HA 3DS5A 3DS4A 2N5IA 2GZGA 3DS2A 3Q20A 2KR5A 1VQ4P 1JJ2O 4U0DA 5HV8A 3H4EA 2FVEA 2PY8A 3DTJA 2KOOA 2Z45A 2KG9A 5HVCA 4COPA 3VRLC 2M8LA 2FQ0A 1UJZA 3G28A 1RO2A 2MVVA 2MY5A 3OW2O 2LF4A 4PXHB 1DV5A 1NJIQ 5HGNA 1A8OA 4HKGA 1HY8A 1M1KQ 2XZ1C 1VQ8P 3NTEA 2PEQA 1M6NA 2MF4A 2KOQA 4PH1A 1VQ9P 1KD1Q 1QRJA 2CG5B 4U0BA 4GR6A 3G0VA 1IUQA 3G21A 4WYMA 1IMPA 2MVUA 1ACPA 4XFXA 2L6EA 5I4TG 5CZDB 2PEIA 1Q86Q 3RG6C 3G1GA 2GDYA 1K8AQ 1E6JP 1UNKA 1EIAA 3CC7P 2AFEA 1S72P 5F2OA 5F2NA 4GR2A 2PNGA 2BUOA 2JAZA 1F80D 1Q7YQ 2K93A 2ROQA 5KP6B 4U0FA 1EOQA 1VQ7P 3HZQA 4PH0A 1YJNP 2KGAA 3G71P 1VQOP 2E1MA 2KG6A 2GZFA 2XZ0D 2XXMA 4XFZA 1BAJA 2KODA 2VLNA 1AF8A 2K0XA 1M74A 1M90Q 1YIJP 2CWOA 1E0HA 4BPFA 3I56P 1EMVA 3EJBA 5EJDA 2KORA 1VQLP 1A43A 1YJWP 1BXIA 4CA3A 2MD9A 2N98A 7CEIA 5HGLA 2JU2A 4BPHA 2KGCA 2GZIA 2AF8A 2OTJP 3G6EP 5JPAA 2L4BA 2PENA 4QNBA 3GZLA 3CE7A 3I55P 1YHQP 2VLQA 3B4QA 3CC4P 2MR7A 2N6YA 1RNIA 2ERHA 2LKIA 2JB0A 3LRYA 2PEKA 1VQPP 2FVAA 2LMLA 2FAEA 2KGDA 2LIUA 2JU1A 1Z6MA 3M1MA 3MGEA 1T8KA 4PWVB 1VQMP 1IMQA 4R0MA 4NEOA 3CXCO 3CCEP 4H2YC 1M6EX 2K5XA 2CQ8A 3G26A 2KGEA 5HGMA 2QA4P 5BS2A 4H2XC 1OR5A 3CMAP 3CCUP 2PEMA 1VKUA 2XT1A 3DPHA 3DS1A 1K73Q 2K94A 2M8PA 3G1IA 2EFJA 1CEIA 2LL8A 3LMOA 2WPTA 2Z44A 2P9XA 4MRTC 4F37A 3CCVP 2N6ZA 1D1DA 3CPWO 1L0IA 2OTLP 3NY7B 2LPKA 4UHPB 2JQ4A 3GJNA 2AFDA 2PEJA 3EJEA 2GYKA 4COCA 1VQNP 2CNRA 3H0DA 1NQ4A 5KP7B 2FACA 1KLPA 3CCLP 2K92A 2L22A 1KC8Q 5EW5E 1X3OA 4QKOA 1VQ6P 1QVFO 3CC2P 1MZ8A 2KOSA 4U0CA 2KOPA 1Q82Q 3B5IA 3GKLC 2GDWA 2JBGA 4U0EA 1DNYA 2MR8A 2GZJA 2LIWA 2L9FA 2XV6A 3E2DA 2FVFA 3CCSP 2EHTA 2NO8A 1W2BO 4IZ6A 2KWLA 2K2QA 2ONTA 2AVAA 4M0IA 2FQ2A 1ZNVA 2BHVA 1YJ9P 4BPGA 1VHNA 1YI2P 2K0DX 2VLPA 1Q81Q 5F2KA 2JGPA 4XFYA 2EIAA 2X2BA 4H2WC 3CMEP 2DNWA 2K0YA 1GPJA 3CCJP
chains in the Genus database with same CATH topology

1YITP 2JYGA 5HGLA 4COPA 3VRLC 3CCVP 2M8LA 5HGOA 3G28A 1RO2A 1D1DA 3CPWO 2EG5A 1ZMBA 3OW2O 2OTJP 2OTLP 2LF4A 3G6EP 5JPAA 2PENA 4QNBA 1NJIQ 5HGNA 1A8OA 3G4SP 3I55P 3CD6P 1YHQP 1N8RQ 1M1KQ 1VQ8P 3P05A 2PEJA 3NTEA 1AUMA 2PEQA 3CCMP 1M6NA 1K30A 4XROA 2M8NA 4COCA 3CC4P 4PH1A 1VQ9P 1VQNP 1KD1Q 3G29A 3CCRP 1RNIA 1K9MQ 2QEXP 1KQSO 1QRJA 3H0DA 4U0BA 3LRYA 4GR6A 3G0VA 1IUQA 3G21A 4WYMA 2PEKA 3CCLP 1VQPP 4XFXA 2PEOA 2DGYA 2L6EA 5I4TG 1KC8Q 2PEIA 1QVGO 1Q86Q 1VQ6P 1QVFO 3CC2P 3RG6C 3G1GA 4U0AA 1K8AQ 4U0CA 1E6JP 1RO0A 3M1MA 1Q82Q 2JO0A 3B5IA 1EIAA 3CC7P 3MGEA 1VQMP 1S72P 5F2OA 4U0EA 5F2NA 4GR2A 5DCKA 4IPYA 3WBHA 2BUOA 3CXCO 1Q7YQ 2Z46A 5BS1A 2OARA 4XRQA 4U0FA 3DS3A 3CCQP 1EOQA 2XV6A 1VQ5P 1VQ7P 3CCEP 3E2DA 1M6EX 3H47A 3HZQA 2JYLA 4PH0A 1YJNP 3HYBA 3G71P 3CCSP 1VQOP 3G26A 2E1MA 3DS0A 1W2BO 5HGMA 2XXMA 1VQKP 4XFZA 2QA4P 3DS5A 3DS4A 1BAJA 2KODA 5BS2A 3DS2A 2ONTA 4M0IA 3CMAP 3CCUP 1M74A 3Q20A 2PEMA 2BHVA 1YJ9P 1M90Q 2XT1A 3DPHA 3DS1A 1YI2P 1YIJP 1K73Q 1VQ4P 2CWOA 2M8PA 3G1IA 1Q81Q 5F2KA 2EFJA 3I56P 1JJ2O 4XFYA 2EIAA 4U0DA 2Z44A 3H4EA 2PY8A 1VQLP 3CMEP 3DTJA 1A43A 2P9XA 2Z45A 1YJWP 3CCJP
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2JYG A;  4XFZ A;  5HGL A;  3DS5 A;  2JO0 A;  3DS4 A;  1EIA A;  1BAJ A;  3G29 A;  2KOD A;  3MGE A;  3VRL C;  3DS2 A;  2M8L A;  4COP A;  2ONT A;  4M0I A;  5HGO A;  1QRJ A;  3G28 A;  4U0E A;  4U0B A;  1D1D A;  5DCK A;  3LRY A;  4IPY A;  3G0V A;  2BUO A;  2XT1 A;  3DPH A;  2LF4 A;  3DS1 A;  3G21 A;  4WYM A;  5JPA A;  2M8P A;  3G1I A;  4QNB A;  5HGM A;  4XRQ A;  4XFX A;  4U0F A;  5HGN A;  3DS3 A;  4XFY A;  1EOQ A;  2EIA A;  2XV6 A;  4U0D A;  1A8O A;  3H47 A;  2JYL A;  3H4E A;  4PH0 A;  2L6E A;  5I4T G;  3P05 A;  3G26 A;  3NTE A;  1AUM A;  3DTJ A;  1A43 A;  3DS0 A;  3G1G A;  4U0A A;  2M8N A;  4XRO A;  4COC A;  2XXM A;  4U0C A;  4PH1 A;  1E6J P; 
#chains in the Genus database with same CATH topology
 1YIT P;  2JYG A;  2FHS C;  2N50 A;  2KG8 A;  5HGO A;  2EG5 A;  1ZMB A;  2L0Q A;  2QNW A;  2KW2 A;  3G4S P;  3CD6 P;  1N8R Q;  3P05 A;  1AUM A;  2VSQ A;  3CCM P;  3EJD A;  1K30 A;  4XRO A;  2M8N A;  1FR2 A;  3GZM A;  3G29 A;  3CCR P;  3RG2 A;  2GDX A;  1K9M Q;  2QEX P;  1KQS O;  2FQ1 A;  2M5R A;  1GXH A;  2PEO A;  2DGY A;  2CGQ A;  3U43 A;  2EHS A;  1QVG O;  4U0A A;  1GXG A;  1RO0 A;  2LTE A;  2JO0 A;  2GZE A;  5KP8 B;  1L0H A;  2VLO A;  5DCK A;  4IPY A;  1AYI A;  1HQB A;  3WBH A;  2Z46 A;  5BS1 A;  2OAR A;  4XRQ A;  4DG9 A;  3DS3 A;  3CCQ P;  2FAD A;  1VQ5 P;  3H47 A;  2JYL A;  3HYB A;  3DS0 A;  2LOL A;  1VQK P;  2N5H A;  3DS5 A;  3DS4 A;  2N5I A;  2GZG A;  3DS2 A;  3Q20 A;  2KR5 A;  1VQ4 P;  1JJ2 O;  4U0D A;  5HV8 A;  3H4E A;  2FVE A;  2PY8 A;  3DTJ A;  2KOO A;  2Z45 A;  2KG9 A;  5HVC A;  4COP A;  3VRL C;  2M8L A;  2FQ0 A;  1UJZ A;  3G28 A;  1RO2 A;  2MVV A;  2MY5 A;  3OW2 O;  2LF4 A;  4PXH B;  1DV5 A;  1NJI Q;  5HGN A;  1A8O A;  4HKG A;  1HY8 A;  1M1K Q;  2XZ1 C;  1VQ8 P;  3NTE A;  2PEQ A;  1M6N A;  2MF4 A;  2KOQ A;  4PH1 A;  1VQ9 P;  1KD1 Q;  1QRJ A;  2CG5 B;  4U0B A;  4GR6 A;  3G0V A;  1IUQ A;  3G21 A;  4WYM A;  1IMP A;  2MVU A;  1ACP A;  4XFX A;  2L6E A;  5I4T G;  5CZD B;  2PEI A;  1Q86 Q;  3RG6 C;  3G1G A;  2GDY A;  1K8A Q;  1E6J P;  1UNK A;  1EIA A;  3CC7 P;  2AFE A;  1S72 P;  5F2O A;  5F2N A;  4GR2 A;  2PNG A;  2BUO A;  2JAZ A;  1F80 D;  1Q7Y Q;  2K93 A;  2ROQ A;  5KP6 B;  4U0F A;  1EOQ A;  1VQ7 P;  3HZQ A;  4PH0 A;  1YJN P;  2KGA A;  3G71 P;  1VQO P;  2E1M A;  2KG6 A;  2GZF A;  2XZ0 D;  2XXM A;  4XFZ A;  1BAJ A;  2KOD A;  2VLN A;  1AF8 A;  2K0X A;  1M74 A;  1M90 Q;  1YIJ P;  2CWO A;  1E0H A;  4BPF A;  3I56 P;  1EMV A;  3EJB A;  5EJD A;  2KOR A;  1VQL P;  1A43 A;  1YJW P;  1BXI A;  4CA3 A;  2MD9 A;  2N98 A;  7CEI A;  5HGL A;  2JU2 A;  4BPH A;  2KGC A;  2GZI A;  2AF8 A;  2OTJ P;  3G6E P;  5JPA A;  2L4B A;  2PEN A;  4QNB A;  3GZL A;  3CE7 A;  3I55 P;  1YHQ P;  2VLQ A;  3B4Q A;  3CC4 P;  2MR7 A;  2N6Y A;  1RNI A;  2ERH A;  2LKI A;  2JB0 A;  3LRY A;  2PEK A;  1VQP P;  2FVA A;  2LML A;  2FAE A;  2KGD A;  2LIU A;  2JU1 A;  1Z6M A;  3M1M A;  3MGE A;  1T8K A;  4PWV B;  1VQM P;  1IMQ A;  4R0M A;  4NEO A;  3CXC O;  3CCE P;  4H2Y C;  1M6E X;  2K5X A;  2CQ8 A;  3G26 A;  2KGE A;  5HGM A;  2QA4 P;  5BS2 A;  4H2X C;  1OR5 A;  3CMA P;  3CCU P;  2PEM A;  1VKU A;  2XT1 A;  3DPH A;  3DS1 A;  1K73 Q;  2K94 A;  2M8P A;  3G1I A;  2EFJ A;  1CEI A;  2LL8 A;  3LMO A;  2WPT A;  2Z44 A;  2P9X A;  4MRT C;  4F37 A;  3CCV P;  2N6Z A;  1D1D A;  3CPW O;  1L0I A;  2OTL P;  3NY7 B;  2LPK A;  4UHP B;  2JQ4 A;  3GJN A;  2AFD A;  2PEJ A;  3EJE A;  2GYK A;  4COC A;  1VQN P;  2CNR A;  3H0D A;  1NQ4 A;  5KP7 B;  2FAC A;  1KLP A;  3CCL P;  2K92 A;  2L22 A;  1KC8 Q;  5EW5 E;  1X3O A;  4QKO A;  1VQ6 P;  1QVF O;  3CC2 P;  1MZ8 A;  2KOS A;  4U0C A;  2KOP A;  1Q82 Q;  3B5I A;  3GKL C;  2GDW A;  2JBG A;  4U0E A;  1DNY A;  2MR8 A;  2GZJ A;  2LIW A;  2L9F A;  2XV6 A;  3E2D A;  2FVF A;  3CCS P;  2EHT A;  2NO8 A;  1W2B O;  4IZ6 A;  2KWL A;  2K2Q A;  2ONT A;  2AVA A;  4M0I A;  2FQ2 A;  1ZNV A;  2BHV A;  1YJ9 P;  4BPG A;  1VHN A;  1YI2 P;  2K0D X;  2VLP A;  1Q81 Q;  5F2K A;  2JGP A;  4XFY A;  2EIA A;  2X2B A;  4H2W C;  3CME P;  2DNW A;  2K0Y A;  1GPJ A;  3CCJ P; 
#chains in the Genus database with same CATH homology
 1YIT P;  2JYG A;  5HGL A;  4COP A;  3VRL C;  3CCV P;  2M8L A;  5HGO A;  3G28 A;  1RO2 A;  1D1D A;  3CPW O;  2EG5 A;  1ZMB A;  3OW2 O;  2OTJ P;  2OTL P;  2LF4 A;  3G6E P;  5JPA A;  2PEN A;  4QNB A;  1NJI Q;  5HGN A;  1A8O A;  3G4S P;  3I55 P;  3CD6 P;  1YHQ P;  1N8R Q;  1M1K Q;  1VQ8 P;  3P05 A;  2PEJ A;  3NTE A;  1AUM A;  2PEQ A;  3CCM P;  1M6N A;  1K30 A;  4XRO A;  2M8N A;  4COC A;  3CC4 P;  4PH1 A;  1VQ9 P;  1VQN P;  1KD1 Q;  3G29 A;  3CCR P;  1RNI A;  1K9M Q;  2QEX P;  1KQS O;  1QRJ A;  3H0D A;  4U0B A;  3LRY A;  4GR6 A;  3G0V A;  1IUQ A;  3G21 A;  4WYM A;  2PEK A;  3CCL P;  1VQP P;  4XFX A;  2PEO A;  2DGY A;  2L6E A;  5I4T G;  1KC8 Q;  2PEI A;  1QVG O;  1Q86 Q;  1VQ6 P;  1QVF O;  3CC2 P;  3RG6 C;  3G1G A;  4U0A A;  1K8A Q;  4U0C A;  1E6J P;  1RO0 A;  3M1M A;  1Q82 Q;  2JO0 A;  3B5I A;  1EIA A;  3CC7 P;  3MGE A;  1VQM P;  1S72 P;  5F2O A;  4U0E A;  5F2N A;  4GR2 A;  5DCK A;  4IPY A;  3WBH A;  2BUO A;  3CXC O;  1Q7Y Q;  2Z46 A;  5BS1 A;  2OAR A;  4XRQ A;  4U0F A;  3DS3 A;  3CCQ P;  1EOQ A;  2XV6 A;  1VQ5 P;  1VQ7 P;  3CCE P;  3E2D A;  1M6E X;  3H47 A;  3HZQ A;  2JYL A;  4PH0 A;  1YJN P;  3HYB A;  3G71 P;  3CCS P;  1VQO P;  3G26 A;  2E1M A;  3DS0 A;  1W2B O;  5HGM A;  2XXM A;  1VQK P;  4XFZ A;  2QA4 P;  3DS5 A;  3DS4 A;  1BAJ A;  2KOD A;  5BS2 A;  3DS2 A;  2ONT A;  4M0I A;  3CMA P;  3CCU P;  1M74 A;  3Q20 A;  2PEM A;  2BHV A;  1YJ9 P;  1M90 Q;  2XT1 A;  3DPH A;  3DS1 A;  1YI2 P;  1YIJ P;  1K73 Q;  1VQ4 P;  2CWO A;  2M8P A;  3G1I A;  1Q81 Q;  5F2K A;  2EFJ A;  3I56 P;  1JJ2 O;  4XFY A;  2EIA A;  4U0D A;  2Z44 A;  3H4E A;  2PY8 A;  1VQL P;  3CME P;  3DTJ A;  1A43 A;  2P9X A;  2Z45 A;  1YJW P;  3CCJ P;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2ONTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization