2ONTA

A swapped dimer of the hiv-1 capsid c-terminal domain
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
73
structure length
73
Chain Sequence
TSILDIRQGPKEPFRDYVDRFYKTLRAEQSQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Domain-swapped dimerization of the HIV-1 capsid C-terminal domain
pubmed doi rcsb
molecule tags Viral protein
source organism Human immunodeficiency virus type 1 (new york-5 isolate)
molecule keywords Capsid protein p24
total genus 22
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2007-01-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2ontA01
5JPAA 4IPYA 4PH0A 3G1IA 2KODA 1AUMA 3DS3A 3H4EA 4XFZA 3G28A 4U0AA 4COPA 4M0IA 2JYGA 4COCA 2XXMA 3MGEA 4WYMA 3DTJA 1A8OA 3NTEA 4U0BA 4XROA 4PH1A 3DS1A 1E6JP 2EIAA 2M8NA 4XFXA 1EIAA 4XFYA 2M8PA 1A43A 5HGMA 2LF4A 3G21A 3G29A 2L6EA 3DS2A 3DS4A 3G0VA 3P05A 3DS5A 4U0CA 1EOQA 2JYLA 3G26A 4U0DA 3VRLC 1BAJA 1QRJA 2M8LA 5I4TG 2BUOA 5HGLA 2XT1A 3LRYA 2JO0A 4U0FA 4U0EA 5DCKA 4QNBA 4XRQA 3DS0A 2XV6A 3DPHA 5HGNA 5HGOA 2ONTA 3G1GA 3H47A 1D1DA
chains in the Genus database with same CATH superfamily
2KODA 5BS2A 2XXMA 3RG2A 1K30A 4GR2A 2FQ0A 2E1MA 2KGCA 3CCJP 1KLPA 3CCUP 2CGQA 1YJNP 1D1DA 1M6NA 3U43A 2DNWA 3DTJA 2MR8A 3NTEA 2FQ2A 5F2OA 4GR6A 1VHNA 1E0HA 1Q81Q 1N8RQ 2GZEA 1VQOP 4U0FA 1KD1Q 3DS0A 5HGOA 2VLQA 3GJNA 3B5IA 1DNYA 4COCA 2LL8A 3M1MA 2FACA 1FR2A 2PEQA 3E2DA 3CC4P 3NY7B 2EIAA 2LTEA 3WBHA 1VQMP 3CCRP 5HV8A 2L6EA 3G0VA 4H2XC 4QKOA 3H0DA 1AYIA 4BPGA 1KC8Q 2FADA 7CEIA 1BXIA 3H47A 2BHVA 1AUMA 1UNKA 2EG5A 2KORA 2M5RA 2LKIA 1ACPA 1YI2P 2K0YA 4IZ6A 2P9XA 2ROQA 1YITP 5HGNA 2KG6A 1CEIA 2KR5A 3G28A 1EMVA 2L0QA 1ZNVA 2M8NA 3RG6C 2FQ1A 2GZFA 2JBGA 2M8LA 1RNIA 2KGEA 2KGDA 1QVGO 5EW5E 4U0EA 3I56P 4DG9A 2GDWA 3CCMP 2QA4P 4U0AA 2FHSC 1YIJP 1KQSO 2PY8A 2JQ4A 2LF4A 2Z45A 1VQ6P 3P05A 3CCEP 1Q7YQ 3OW2O 2N5HA 1L0HA 2KW2A 2GZJA 2QEXP 3G29A 1GPJA 4IPYA 1HQBA 3H4EA 4COPA 1YHQP 2K5XA 5EJDA 3DS2A 3CCQP 3CCSP 2VLOA 1DV5A 1YJ9P 1QRJA 2LMLA 2MF4A 2PEKA 2KOSA 1VQ9P 2ONTA 2MVVA 3G71P 1Q82Q 3CMEP 2K0XA 2K2QA 3CC7P 3DS1A 4BPFA 1M90Q 1GXGA 4PWVB 2AVAA 2DGYA 4PXHB 2MD9A 2PEIA 2VLPA 2KWLA 2L9FA 4MRTC 3HYBA 2Z44A 1M74A 2MY5A 3MGEA 5F2NA 1VQ4P 2QNWA 5HVCA 1VQNP 4CA3A 1EOQA 1BAJA 2CQ8A 2BUOA 2JO0A 5CZDB 4H2YC 3DPHA 5KP7B 1GXHA 2JYGA 3CC2P 1YJWP 4XROA 4BPHA 1Z6MA 2L4BA 1K8AQ 1OR5A 3LRYA 2XZ0D 2EHTA 2OARA 2KOQA 3HZQA 1IMPA 3CPWO 2XZ1C 2EFJA 2N6ZA 4M0IA 2JU1A 1K73Q 2VLNA 2NO8A 3G21A 2KOPA 3GZLA 3CCVP 2OTLP 4F37A 2L22A 2GDXA 1M1KQ 2KOOA 3G6EP 1W2BO 1VQ5P 3GKLC 3EJBA 1JJ2O 1X3OA 2CWOA 2Z46A 1E6JP 3B4QA 2N98A 3Q20A 1M6EX 3VRLC 2JYLA 3G26A 2LOLA 2OTJP 3CE7A 2FAEA 2VSQA 5DCKA 4QNBA 2EHSA 3G4SP 3G1GA 2WPTA 2PENA 5JPAA 3CD6P 3LMOA 2K92A 2LIUA 5KP6B 1RO0A 2ERHA 1A8OA 4PH1A 2KGAA 2KG9A 1IUQA 4XFYA 1VQPP 3CXCO 3DS5A 2N50A 1L0IA 2PEJA 5HGLA 5F2KA 4XRQA 2CG5B 1K9MQ 1F80D 2GZIA 2FVFA 2CNRA 1NJIQ 2GZGA 2MR7A 1RO2A 2GYKA 1IMQA 5HGMA 4HKGA 2AFDA 1VQ8P 4U0CA 2N5IA 1QVFO 2K0DX 5I4TG 1HY8A 2AF8A 2LIWA 2KG8A 2JGPA 2XV6A 3EJDA 4PH0A 3G1IA 1VKUA 3DS3A 4XFZA 1AF8A 5KP8B 2PNGA 1VQLP 2JU2A 5BS1A 4UHPB 1EIAA 1VQKP 2GDYA 2PEMA 2JB0A 2K93A 1S72P 1NQ4A 2LPKA 2XT1A 2JAZA 3EJEA 3I55P 4R0MA 1Q86Q 3CMAP 1ZMBA 2FVEA 3CCLP 2K94A 1VQ7P 2N6YA 1MZ8A 2AFEA 2X2BA 4WYMA 4U0BA 4XFXA 2M8PA 1A43A 3DS4A 2FVAA 4U0DA 4NEOA 1T8KA 1UJZA 2MVUA 2PEOA 3GZMA 4H2WC
chains in the Genus database with same CATH topology
2PENA 5JPAA 2KODA 5BS2A 3CD6P 3G28A 2Z44A 1RO0A 1M74A 2XXMA 3MGEA 1A8OA 5F2NA 4PH1A 1VQ4P 1IUQA 2M8NA 1K30A 4XFYA 3RG6C 1VQPP 4GR2A 1VQNP 3CXCO 3DS5A 1EOQA 1BAJA 2E1MA 2M8LA 1RNIA 3CCJP 2BUOA 2PEJA 5HGLA 3CCUP 1QVGO 5F2KA 2JO0A 4U0EA 3I56P 4XRQA 3DPHA 1YJNP 1K9MQ 1D1DA 1M6NA 3CCMP 2QA4P 4U0AA 1NJIQ 2JYGA 3CC2P 3DTJA 1YIJP 1YJWP 3NTEA 4XROA 1RO2A 5HGMA 1KQSO 5F2OA 2PY8A 2LF4A 2Z45A 4GR6A 1VQ8P 1K8AQ 1VQ6P 4U0CA 3P05A 3CCEP 1QVFO 1Q7YQ 5I4TG 3OW2O 3LRYA 1Q81Q 1N8RQ 1VQOP 4U0FA 1KD1Q 2OARA 3DS0A 2XV6A 3HZQA 5HGOA 2QEXP 3G29A 4IPYA 4PH0A 3G1IA 3B5IA 3CPWO 3DS3A 3H4EA 4XFZA 4COPA 2EFJA 4M0IA 4COCA 3M1MA 1VQLP 5BS1A 1YHQP 1K73Q 2PEQA 3E2DA 3CC4P 2EIAA 1EIAA 1VQKP 2PEMA 3WBHA 1VQMP 3CCRP 3G21A 2L6EA 3DS2A 3CCQP 3G0VA 3CCSP 3CCVP 2OTLP 1YJ9P 1QRJA 1S72P 3H0DA 1KC8Q 2XT1A 1M1KQ 2PEKA 3I55P 1Q86Q 3CMAP 1ZMBA 1VQ9P 3G6EP 3CCLP 2ONTA 3H47A 3G71P 1W2BO 1VQ5P 1Q82Q 2BHVA 1VQ7P 1AUMA 1JJ2O 2CWOA 3CMEP 3CC7P 4WYMA 2EG5A 2Z46A 4U0BA 3DS1A 1E6JP 4XFXA 1M90Q 2M8PA 1A43A 3DS4A 3Q20A 1M6EX 2DGYA 3VRLC 2JYLA 3G26A 4U0DA 1YI2P 2OTJP 2P9XA 2PEIA 1YITP 2PEOA 5DCKA 4QNBA 3HYBA 5HGNA 3G4SP 3G1GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JPA A;  4IPY A;  4PH0 A;  3G1I A;  2KOD A;  1AUM A;  3DS3 A;  3H4E A;  4XFZ A;  3G28 A;  4U0A A;  4COP A;  4M0I A;  2JYG A;  4COC A;  2XXM A;  3MGE A;  4WYM A;  3DTJ A;  1A8O A;  3NTE A;  4U0B A;  4XRO A;  4PH1 A;  3DS1 A;  1E6J P;  2EIA A;  2M8N A;  4XFX A;  1EIA A;  4XFY A;  2M8P A;  1A43 A;  5HGM A;  2LF4 A;  3G21 A;  3G29 A;  2L6E A;  3DS2 A;  3DS4 A;  3G0V A;  3P05 A;  3DS5 A;  4U0C A;  1EOQ A;  2JYL A;  3G26 A;  4U0D A;  3VRL C;  1BAJ A;  1QRJ A;  2M8L A;  5I4T G;  2BUO A;  5HGL A;  2XT1 A;  3LRY A;  2JO0 A;  4U0F A;  4U0E A;  5DCK A;  4QNB A;  4XRQ A;  3DS0 A;  2XV6 A;  3DPH A;  5HGN A;  5HGO A;  2ONT A;  3G1G A;  3H47 A;  1D1D A; 
#chains in the Genus database with same CATH topology
 2KOD A;  5BS2 A;  2XXM A;  3RG2 A;  1K30 A;  4GR2 A;  2FQ0 A;  2E1M A;  2KGC A;  3CCJ P;  1KLP A;  3CCU P;  2CGQ A;  1YJN P;  1D1D A;  1M6N A;  3U43 A;  2DNW A;  3DTJ A;  2MR8 A;  3NTE A;  2FQ2 A;  5F2O A;  4GR6 A;  1VHN A;  1E0H A;  1Q81 Q;  1N8R Q;  2GZE A;  1VQO P;  4U0F A;  1KD1 Q;  3DS0 A;  5HGO A;  2VLQ A;  3GJN A;  3B5I A;  1DNY A;  4COC A;  2LL8 A;  3M1M A;  2FAC A;  1FR2 A;  2PEQ A;  3E2D A;  3CC4 P;  3NY7 B;  2EIA A;  2LTE A;  3WBH A;  1VQM P;  3CCR P;  5HV8 A;  2L6E A;  3G0V A;  4H2X C;  4QKO A;  3H0D A;  1AYI A;  4BPG A;  1KC8 Q;  2FAD A;  7CEI A;  1BXI A;  3H47 A;  2BHV A;  1AUM A;  1UNK A;  2EG5 A;  2KOR A;  2M5R A;  2LKI A;  1ACP A;  1YI2 P;  2K0Y A;  4IZ6 A;  2P9X A;  2ROQ A;  1YIT P;  5HGN A;  2KG6 A;  1CEI A;  2KR5 A;  3G28 A;  1EMV A;  2L0Q A;  1ZNV A;  2M8N A;  3RG6 C;  2FQ1 A;  2GZF A;  2JBG A;  2M8L A;  1RNI A;  2KGE A;  2KGD A;  1QVG O;  5EW5 E;  4U0E A;  3I56 P;  4DG9 A;  2GDW A;  3CCM P;  2QA4 P;  4U0A A;  2FHS C;  1YIJ P;  1KQS O;  2PY8 A;  2JQ4 A;  2LF4 A;  2Z45 A;  1VQ6 P;  3P05 A;  3CCE P;  1Q7Y Q;  3OW2 O;  2N5H A;  1L0H A;  2KW2 A;  2GZJ A;  2QEX P;  3G29 A;  1GPJ A;  4IPY A;  1HQB A;  3H4E A;  4COP A;  1YHQ P;  2K5X A;  5EJD A;  3DS2 A;  3CCQ P;  3CCS P;  2VLO A;  1DV5 A;  1YJ9 P;  1QRJ A;  2LML A;  2MF4 A;  2PEK A;  2KOS A;  1VQ9 P;  2ONT A;  2MVV A;  3G71 P;  1Q82 Q;  3CME P;  2K0X A;  2K2Q A;  3CC7 P;  3DS1 A;  4BPF A;  1M90 Q;  1GXG A;  4PWV B;  2AVA A;  2DGY A;  4PXH B;  2MD9 A;  2PEI A;  2VLP A;  2KWL A;  2L9F A;  4MRT C;  3HYB A;  2Z44 A;  1M74 A;  2MY5 A;  3MGE A;  5F2N A;  1VQ4 P;  2QNW A;  5HVC A;  1VQN P;  4CA3 A;  1EOQ A;  1BAJ A;  2CQ8 A;  2BUO A;  2JO0 A;  5CZD B;  4H2Y C;  3DPH A;  5KP7 B;  1GXH A;  2JYG A;  3CC2 P;  1YJW P;  4XRO A;  4BPH A;  1Z6M A;  2L4B A;  1K8A Q;  1OR5 A;  3LRY A;  2XZ0 D;  2EHT A;  2OAR A;  2KOQ A;  3HZQ A;  1IMP A;  3CPW O;  2XZ1 C;  2EFJ A;  2N6Z A;  4M0I A;  2JU1 A;  1K73 Q;  2VLN A;  2NO8 A;  3G21 A;  2KOP A;  3GZL A;  3CCV P;  2OTL P;  4F37 A;  2L22 A;  2GDX A;  1M1K Q;  2KOO A;  3G6E P;  1W2B O;  1VQ5 P;  3GKL C;  3EJB A;  1JJ2 O;  1X3O A;  2CWO A;  2Z46 A;  1E6J P;  3B4Q A;  2N98 A;  3Q20 A;  1M6E X;  3VRL C;  2JYL A;  3G26 A;  2LOL A;  2OTJ P;  3CE7 A;  2FAE A;  2VSQ A;  5DCK A;  4QNB A;  2EHS A;  3G4S P;  3G1G A;  2WPT A;  2PEN A;  5JPA A;  3CD6 P;  3LMO A;  2K92 A;  2LIU A;  5KP6 B;  1RO0 A;  2ERH A;  1A8O A;  4PH1 A;  2KGA A;  2KG9 A;  1IUQ A;  4XFY A;  1VQP P;  3CXC O;  3DS5 A;  2N50 A;  1L0I A;  2PEJ A;  5HGL A;  5F2K A;  4XRQ A;  2CG5 B;  1K9M Q;  1F80 D;  2GZI A;  2FVF A;  2CNR A;  1NJI Q;  2GZG A;  2MR7 A;  1RO2 A;  2GYK A;  1IMQ A;  5HGM A;  4HKG A;  2AFD A;  1VQ8 P;  4U0C A;  2N5I A;  1QVF O;  2K0D X;  5I4T G;  1HY8 A;  2AF8 A;  2LIW A;  2KG8 A;  2JGP A;  2XV6 A;  3EJD A;  4PH0 A;  3G1I A;  1VKU A;  3DS3 A;  4XFZ A;  1AF8 A;  5KP8 B;  2PNG A;  1VQL P;  2JU2 A;  5BS1 A;  4UHP B;  1EIA A;  1VQK P;  2GDY A;  2PEM A;  2JB0 A;  2K93 A;  1S72 P;  1NQ4 A;  2LPK A;  2XT1 A;  2JAZ A;  3EJE A;  3I55 P;  4R0M A;  1Q86 Q;  3CMA P;  1ZMB A;  2FVE A;  3CCL P;  2K94 A;  1VQ7 P;  2N6Y A;  1MZ8 A;  2AFE A;  2X2B A;  4WYM A;  4U0B A;  4XFX A;  2M8P A;  1A43 A;  3DS4 A;  2FVA A;  4U0D A;  4NEO A;  1T8K A;  1UJZ A;  2MVU A;  2PEO A;  3GZM A;  4H2W C; 
#chains in the Genus database with same CATH homology
 2PEN A;  5JPA A;  2KOD A;  5BS2 A;  3CD6 P;  3G28 A;  2Z44 A;  1RO0 A;  1M74 A;  2XXM A;  3MGE A;  1A8O A;  5F2N A;  4PH1 A;  1VQ4 P;  1IUQ A;  2M8N A;  1K30 A;  4XFY A;  3RG6 C;  1VQP P;  4GR2 A;  1VQN P;  3CXC O;  3DS5 A;  1EOQ A;  1BAJ A;  2E1M A;  2M8L A;  1RNI A;  3CCJ P;  2BUO A;  2PEJ A;  5HGL A;  3CCU P;  1QVG O;  5F2K A;  2JO0 A;  4U0E A;  3I56 P;  4XRQ A;  3DPH A;  1YJN P;  1K9M Q;  1D1D A;  1M6N A;  3CCM P;  2QA4 P;  4U0A A;  1NJI Q;  2JYG A;  3CC2 P;  3DTJ A;  1YIJ P;  1YJW P;  3NTE A;  4XRO A;  1RO2 A;  5HGM A;  1KQS O;  5F2O A;  2PY8 A;  2LF4 A;  2Z45 A;  4GR6 A;  1VQ8 P;  1K8A Q;  1VQ6 P;  4U0C A;  3P05 A;  3CCE P;  1QVF O;  1Q7Y Q;  5I4T G;  3OW2 O;  3LRY A;  1Q81 Q;  1N8R Q;  1VQO P;  4U0F A;  1KD1 Q;  2OAR A;  3DS0 A;  2XV6 A;  3HZQ A;  5HGO A;  2QEX P;  3G29 A;  4IPY A;  4PH0 A;  3G1I A;  3B5I A;  3CPW O;  3DS3 A;  3H4E A;  4XFZ A;  4COP A;  2EFJ A;  4M0I A;  4COC A;  3M1M A;  1VQL P;  5BS1 A;  1YHQ P;  1K73 Q;  2PEQ A;  3E2D A;  3CC4 P;  2EIA A;  1EIA A;  1VQK P;  2PEM A;  3WBH A;  1VQM P;  3CCR P;  3G21 A;  2L6E A;  3DS2 A;  3CCQ P;  3G0V A;  3CCS P;  3CCV P;  2OTL P;  1YJ9 P;  1QRJ A;  1S72 P;  3H0D A;  1KC8 Q;  2XT1 A;  1M1K Q;  2PEK A;  3I55 P;  1Q86 Q;  3CMA P;  1ZMB A;  1VQ9 P;  3G6E P;  3CCL P;  2ONT A;  3H47 A;  3G71 P;  1W2B O;  1VQ5 P;  1Q82 Q;  2BHV A;  1VQ7 P;  1AUM A;  1JJ2 O;  2CWO A;  3CME P;  3CC7 P;  4WYM A;  2EG5 A;  2Z46 A;  4U0B A;  3DS1 A;  1E6J P;  4XFX A;  1M90 Q;  2M8P A;  1A43 A;  3DS4 A;  3Q20 A;  1M6E X;  2DGY A;  3VRL C;  2JYL A;  3G26 A;  4U0D A;  1YI2 P;  2OTJ P;  2P9X A;  2PEI A;  1YIT P;  2PEO A;  5DCK A;  4QNB A;  3HYB A;  5HGN A;  3G4S P;  3G1G A; 
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similar chains in the pdb database (?% sequence similarity)

 
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