2PEMA

Crystal structure of rbcx in complex with substrate
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
110
structure length
110
Chain Sequence
EFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (4-33)AH2 (35-47)EMPTYTI1 (49-52)AH3 (53-62)AH4 (65-83)AH5 (85-110)Updating...
connected with : NaN
molecule tags Chaperone
source organism Synechococcus sp.
publication title Structure and Function of RbcX, an Assembly Chaperone for Hexadecameric Rubisco.
pubmed doi rcsb
molecule keywords ORF134
total genus 48
structure length 110
sequence length 110
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2007-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02341 RcbX RbcX protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2pemA00
2PY8A 2Z45A 2Z44A 2PEQA 4GR2A 2PEJA 2PEMA 5BS2A 2Z46A 2PENA 4GR6A 3Q20A 5BS1A 3RG6C 2PEKA 3HYBA 2PEIA 2PEOA
chains in the Genus database with same CATH superfamily
4PWVB 4H2WC 3CCUP 5F2OA 1HY8A 2VLNA 2KWLA 2KOPA 3CMAP 3WBHA 2FVAA 1EIAA 3CCJP 1KC8Q 1L0IA 2MR8A 2GZFA 4XFXA 4GR2A 2PEJA 2K2QA 1M1KQ 2KODA 1QRJA 3LMOA 2PNGA 2GZIA 5F2NA 2P9XA 2Z46A 4U0BA 4PH0A 2FVFA 2L9FA 2ROQA 3DS0A 3DS5A 2OTJP 2LTEA 3RG2A 4CA3A 1YIJP 2AVAA 2L0QA 2AF8A 2Z45A 4BPGA 2CG5B 3CPWO 2Z44A 5HGOA 2XZ0D 2KW2A 3CE7A 2NO8A 2MR7A 2K94A 2N50A 2JYLA 2PEIA 1YJ9P 1MZ8A 2XT1A 3CCEP 1YJWP 2GZGA 1JJ2O 2K0DX 3HZQA 2PEKA 2PEMA 2N5HA 2AFDA 2PEOA 2LIUA 3CXCO 4XROA 1VQLP 2KOSA 5KP6B 1DV5A 2LF4A 2LOLA 3CMEP 1ZNVA 1NQ4A 3Q20A 2KG6A 2FADA 3DTJA 2FAEA 2QEXP 3I55P 4XFYA 2JU2A 1VHNA 1K8AQ 2GDYA 2M8LA 5HV8A 2VSQA 2KG9A 1VQ4P 4BPHA 7CEIA 1X3OA 3CC2P 2JAZA 2GDWA 2GZEA 5JPAA 3M1MA 1VQKP 1S72P 1YI2P 1YJNP 4IZ6A 1E0HA 1RNIA 3DPHA 1IMPA 1RO0A 2PY8A 2KR5A 2FACA 2N6ZA 1VQ7P 2VLPA 2QNWA 1RO2A 1ZMBA 2GZJA 1Q7YQ 2EHSA 4COPA 3G26A 1EMVA 3G28A 1A8OA 5DCKA 2CGQA 1L0HA 3GZMA 4XFZA 5CZDB 3G1IA 3CC7P 1UNKA 2JGPA 4QNBA 5I4TG 1EOQA 3DS3A 1GXGA 5EW5E 1Q86Q 3GJNA 5F2KA 1DNYA 2JBGA 3OW2O 2FQ1A 2XXMA 3VRLC 2JO0A 2K5XA 1M6NA 2LIWA 3CCMP 2GYKA 3E2DA 3G71P 1AF8A 2MVVA 2JYGA 1NJIQ 4M0IA 3GKLC 4H2XC 1BAJA 1GPJA 2FQ2A 2BUOA 1K30A 1IUQA 1VQ5P 1KD1Q 1HQBA 4BPFA 4COCA 1VQ6P 2LL8A 4NEOA 2CNRA 2ERHA 3H0DA 1VQMP 4WYMA 1VQ9P 2EG5A 2VLOA 3EJEA 3CCVP 1BXIA 2LMLA 2N5IA 1ACPA 2MVUA 1A43A 4U0AA 2L22A 2E1MA 3LRYA 1F80D 3G0VA 2M8PA 2K0YA 1VQNP 1VKUA 1M6EX 2WPTA 2LKIA 2ONTA 2KGCA 3HYBA 3G4SP 3I56P 1VQPP 2OARA 1GXHA 5HGMA 3DS4A 1IMQA 4IPYA 2L4BA 3DS2A 2DGYA 1VQOP 1QVGO 2JU1A 4H2YC 1VQ8P 2PENA 3H47A 1K73Q 4XRQA 2FQ0A 4GR6A 2GDXA 3CCSP 1Q81Q 5KP8B 2EHTA 4DG9A 2QA4P 1Z6MA 2X2BA 3GZLA 2M5RA 2K0XA 4QKOA 3NY7B 1D1DA 1UJZA 2KGEA 4UHPB 1KLPA 2AFEA 1M90Q 2MF4A 2JB0A 2N6YA 2VLQA 2KGDA 2DNWA 3B5IA 3CCLP 1AUMA 3G29A 2FVEA 1KQSO 1E6JP 2EFJA 4HKGA 2L6EA 5HVCA 2KOOA 1AYIA 2KORA 3CD6P 4F37A 3G21A 2CQ8A 2KOQA 2PEQA 1QVFO 2N98A 3B4QA 2K93A 2EIAA 4U0EA 3U43A 3P05A 2K92A 5HGLA 4U0CA 3CC4P 3H4EA 3DS1A 1K9MQ 2MY5A 1YHQP 3CCQP 3RG6C 2FHSC 3G6EP 1CEIA 2KGAA 3NTEA 4MRTC 4PH1A 2KG8A 4U0FA 2CWOA 3EJBA 3EJDA 5BS2A 4U0DA 2BHVA 5BS1A 5EJDA 3MGEA 4PXHB 4R0MA 5HGNA 5KP7B 1YITP 2OTLP 1M74A 1OR5A 1W2BO 3CCRP 2MD9A 2XZ1C 3G1GA 1T8KA 2JQ4A 2XV6A 1Q82Q 2M8NA 1FR2A 1N8RQ 2LPKA
chains in the Genus database with same CATH topology
1NJIQ 3DTJA 1M90Q 2QEXP 4M0IA 3I55P 3CCUP 4XFYA 1BAJA 5F2OA 1K8AQ 2BUOA 2M8LA 3CMAP 1K30A 3WBHA 3B5IA 3CCLP 1AUMA 1IUQA 1VQ4P 1VQ5P 1EIAA 3CCJP 1KD1Q 1KC8Q 4XFXA 3G29A 1KQSO 4GR2A 4COCA 1VQ6P 2PEJA 1E6JP 3CC2P 1M1KQ 2KODA 2EFJA 1QRJA 2L6EA 3H0DA 1VQMP 4WYMA 5JPAA 3M1MA 1VQ9P 3CD6P 1VQKP 1S72P 2EG5A 5F2NA 2P9XA 3G21A 1YI2P 1YJNP 2Z46A 4U0BA 4PH0A 1RNIA 3CCVP 3DPHA 3DS0A 1RO0A 1A43A 2PY8A 2PEQA 1QVFO 4U0AA 3DS5A 1VQ7P 2OTJP 2E1MA 3LRYA 3G0VA 2EIAA 4U0EA 1YIJP 2M8PA 3P05A 2Z45A 1VQNP 1M6EX 5HGLA 1RO2A 1ZMBA 4U0CA 3CC4P 3H4EA 1Q7YQ 3CPWO 2ONTA 2Z44A 3HYBA 5HGOA 4COPA 3DS1A 1K9MQ 3G4SP 3I56P 3G26A 1YHQP 3G28A 1VQPP 3CCQP 2OARA 3RG6C 5HGMA 1A8OA 3DS4A 2JYLA 2PEIA 4IPYA 3G6EP 3NTEA 5DCKA 3DS2A 2DGYA 4PH1A 4U0FA 4XFZA 1YJ9P 1VQOP 1QVGO 3G1IA 2CWOA 2XT1A 3CC7P 4QNBA 5BS2A 1VQ8P 3CCEP 1YJWP 4U0DA 2BHVA 2PENA 5I4TG 1EOQA 3H47A 5BS1A 1JJ2O 3MGEA 3DS3A 1K73Q 3HZQA 1Q86Q 2PEKA 2PEMA 5HGNA 2PEOA 4XRQA 1YITP 2OTLP 3CXCO 4XROA 1VQLP 1M74A 1W2BO 5F2KA 4GR6A 3CCRP 3CCSP 3OW2O 2XXMA 3VRLC 1Q81Q 2JO0A 2LF4A 2QA4P 3G1GA 1M6NA 3CMEP 3CCMP 2XV6A 3E2DA 1Q82Q 2M8NA 3G71P 1N8RQ 1D1DA 2JYGA 3Q20A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PY8 A;  2Z45 A;  2Z44 A;  2PEQ A;  4GR2 A;  2PEJ A;  2PEM A;  5BS2 A;  2Z46 A;  2PEN A;  4GR6 A;  3Q20 A;  5BS1 A;  3RG6 C;  2PEK A;  3HYB A;  2PEI A;  2PEO A; 
#chains in the Genus database with same CATH topology
 4PWV B;  4H2W C;  3CCU P;  5F2O A;  1HY8 A;  2VLN A;  2KWL A;  2KOP A;  3CMA P;  3WBH A;  2FVA A;  1EIA A;  3CCJ P;  1KC8 Q;  1L0I A;  2MR8 A;  2GZF A;  4XFX A;  4GR2 A;  2PEJ A;  2K2Q A;  1M1K Q;  2KOD A;  1QRJ A;  3LMO A;  2PNG A;  2GZI A;  5F2N A;  2P9X A;  2Z46 A;  4U0B A;  4PH0 A;  2FVF A;  2L9F A;  2ROQ A;  3DS0 A;  3DS5 A;  2OTJ P;  2LTE A;  3RG2 A;  4CA3 A;  1YIJ P;  2AVA A;  2L0Q A;  2AF8 A;  2Z45 A;  4BPG A;  2CG5 B;  3CPW O;  2Z44 A;  5HGO A;  2XZ0 D;  2KW2 A;  3CE7 A;  2NO8 A;  2MR7 A;  2K94 A;  2N50 A;  2JYL A;  2PEI A;  1YJ9 P;  1MZ8 A;  2XT1 A;  3CCE P;  1YJW P;  2GZG A;  1JJ2 O;  2K0D X;  3HZQ A;  2PEK A;  2PEM A;  2N5H A;  2AFD A;  2PEO A;  2LIU A;  3CXC O;  4XRO A;  1VQL P;  2KOS A;  5KP6 B;  1DV5 A;  2LF4 A;  2LOL A;  3CME P;  1ZNV A;  1NQ4 A;  3Q20 A;  2KG6 A;  2FAD A;  3DTJ A;  2FAE A;  2QEX P;  3I55 P;  4XFY A;  2JU2 A;  1VHN A;  1K8A Q;  2GDY A;  2M8L A;  5HV8 A;  2VSQ A;  2KG9 A;  1VQ4 P;  4BPH A;  7CEI A;  1X3O A;  3CC2 P;  2JAZ A;  2GDW A;  2GZE A;  5JPA A;  3M1M A;  1VQK P;  1S72 P;  1YI2 P;  1YJN P;  4IZ6 A;  1E0H A;  1RNI A;  3DPH A;  1IMP A;  1RO0 A;  2PY8 A;  2KR5 A;  2FAC A;  2N6Z A;  1VQ7 P;  2VLP A;  2QNW A;  1RO2 A;  1ZMB A;  2GZJ A;  1Q7Y Q;  2EHS A;  4COP A;  3G26 A;  1EMV A;  3G28 A;  1A8O A;  5DCK A;  2CGQ A;  1L0H A;  3GZM A;  4XFZ A;  5CZD B;  3G1I A;  3CC7 P;  1UNK A;  2JGP A;  4QNB A;  5I4T G;  1EOQ A;  3DS3 A;  1GXG A;  5EW5 E;  1Q86 Q;  3GJN A;  5F2K A;  1DNY A;  2JBG A;  3OW2 O;  2FQ1 A;  2XXM A;  3VRL C;  2JO0 A;  2K5X A;  1M6N A;  2LIW A;  3CCM P;  2GYK A;  3E2D A;  3G71 P;  1AF8 A;  2MVV A;  2JYG A;  1NJI Q;  4M0I A;  3GKL C;  4H2X C;  1BAJ A;  1GPJ A;  2FQ2 A;  2BUO A;  1K30 A;  1IUQ A;  1VQ5 P;  1KD1 Q;  1HQB A;  4BPF A;  4COC A;  1VQ6 P;  2LL8 A;  4NEO A;  2CNR A;  2ERH A;  3H0D A;  1VQM P;  4WYM A;  1VQ9 P;  2EG5 A;  2VLO A;  3EJE A;  3CCV P;  1BXI A;  2LML A;  2N5I A;  1ACP A;  2MVU A;  1A43 A;  4U0A A;  2L22 A;  2E1M A;  3LRY A;  1F80 D;  3G0V A;  2M8P A;  2K0Y A;  1VQN P;  1VKU A;  1M6E X;  2WPT A;  2LKI A;  2ONT A;  2KGC A;  3HYB A;  3G4S P;  3I56 P;  1VQP P;  2OAR A;  1GXH A;  5HGM A;  3DS4 A;  1IMQ A;  4IPY A;  2L4B A;  3DS2 A;  2DGY A;  1VQO P;  1QVG O;  2JU1 A;  4H2Y C;  1VQ8 P;  2PEN A;  3H47 A;  1K73 Q;  4XRQ A;  2FQ0 A;  4GR6 A;  2GDX A;  3CCS P;  1Q81 Q;  5KP8 B;  2EHT A;  4DG9 A;  2QA4 P;  1Z6M A;  2X2B A;  3GZL A;  2M5R A;  2K0X A;  4QKO A;  3NY7 B;  1D1D A;  1UJZ A;  2KGE A;  4UHP B;  1KLP A;  2AFE A;  1M90 Q;  2MF4 A;  2JB0 A;  2N6Y A;  2VLQ A;  2KGD A;  2DNW A;  3B5I A;  3CCL P;  1AUM A;  3G29 A;  2FVE A;  1KQS O;  1E6J P;  2EFJ A;  4HKG A;  2L6E A;  5HVC A;  2KOO A;  1AYI A;  2KOR A;  3CD6 P;  4F37 A;  3G21 A;  2CQ8 A;  2KOQ A;  2PEQ A;  1QVF O;  2N98 A;  3B4Q A;  2K93 A;  2EIA A;  4U0E A;  3U43 A;  3P05 A;  2K92 A;  5HGL A;  4U0C A;  3CC4 P;  3H4E A;  3DS1 A;  1K9M Q;  2MY5 A;  1YHQ P;  3CCQ P;  3RG6 C;  2FHS C;  3G6E P;  1CEI A;  2KGA A;  3NTE A;  4MRT C;  4PH1 A;  2KG8 A;  4U0F A;  2CWO A;  3EJB A;  3EJD A;  5BS2 A;  4U0D A;  2BHV A;  5BS1 A;  5EJD A;  3MGE A;  4PXH B;  4R0M A;  5HGN A;  5KP7 B;  1YIT P;  2OTL P;  1M74 A;  1OR5 A;  1W2B O;  3CCR P;  2MD9 A;  2XZ1 C;  3G1G A;  1T8K A;  2JQ4 A;  2XV6 A;  1Q82 Q;  2M8N A;  1FR2 A;  1N8R Q;  2LPK A; 
#chains in the Genus database with same CATH homology
 1NJI Q;  3DTJ A;  1M90 Q;  2QEX P;  4M0I A;  3I55 P;  3CCU P;  4XFY A;  1BAJ A;  5F2O A;  1K8A Q;  2BUO A;  2M8L A;  3CMA P;  1K30 A;  3WBH A;  3B5I A;  3CCL P;  1AUM A;  1IUQ A;  1VQ4 P;  1VQ5 P;  1EIA A;  3CCJ P;  1KD1 Q;  1KC8 Q;  4XFX A;  3G29 A;  1KQS O;  4GR2 A;  4COC A;  1VQ6 P;  2PEJ A;  1E6J P;  3CC2 P;  1M1K Q;  2KOD A;  2EFJ A;  1QRJ A;  2L6E A;  3H0D A;  1VQM P;  4WYM A;  5JPA A;  3M1M A;  1VQ9 P;  3CD6 P;  1VQK P;  1S72 P;  2EG5 A;  5F2N A;  2P9X A;  3G21 A;  1YI2 P;  1YJN P;  2Z46 A;  4U0B A;  4PH0 A;  1RNI A;  3CCV P;  3DPH A;  3DS0 A;  1RO0 A;  1A43 A;  2PY8 A;  2PEQ A;  1QVF O;  4U0A A;  3DS5 A;  1VQ7 P;  2OTJ P;  2E1M A;  3LRY A;  3G0V A;  2EIA A;  4U0E A;  1YIJ P;  2M8P A;  3P05 A;  2Z45 A;  1VQN P;  1M6E X;  5HGL A;  1RO2 A;  1ZMB A;  4U0C A;  3CC4 P;  3H4E A;  1Q7Y Q;  3CPW O;  2ONT A;  2Z44 A;  3HYB A;  5HGO A;  4COP A;  3DS1 A;  1K9M Q;  3G4S P;  3I56 P;  3G26 A;  1YHQ P;  3G28 A;  1VQP P;  3CCQ P;  2OAR A;  3RG6 C;  5HGM A;  1A8O A;  3DS4 A;  2JYL A;  2PEI A;  4IPY A;  3G6E P;  3NTE A;  5DCK A;  3DS2 A;  2DGY A;  4PH1 A;  4U0F A;  4XFZ A;  1YJ9 P;  1VQO P;  1QVG O;  3G1I A;  2CWO A;  2XT1 A;  3CC7 P;  4QNB A;  5BS2 A;  1VQ8 P;  3CCE P;  1YJW P;  4U0D A;  2BHV A;  2PEN A;  5I4T G;  1EOQ A;  3H47 A;  5BS1 A;  1JJ2 O;  3MGE A;  3DS3 A;  1K73 Q;  3HZQ A;  1Q86 Q;  2PEK A;  2PEM A;  5HGN A;  2PEO A;  4XRQ A;  1YIT P;  2OTL P;  3CXC O;  4XRO A;  1VQL P;  1M74 A;  1W2B O;  5F2K A;  4GR6 A;  3CCR P;  3CCS P;  3OW2 O;  2XXM A;  3VRL C;  1Q81 Q;  2JO0 A;  2LF4 A;  2QA4 P;  3G1G A;  1M6N A;  3CME P;  3CCM P;  2XV6 A;  3E2D A;  1Q82 Q;  2M8N A;  3G71 P;  1N8R Q;  1D1D A;  2JYG A;  3Q20 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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