2PENA

Crystal structure of rbcx, crystal form i
Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
110
structure length
110
Chain Sequence
EFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (4-33)AH2 (35-47)EMPTYTI1 (49-52)AH4 (65-83)AH5 (85-110)AH3 (53-62)Updating...
connected with : NaN
molecule tags Chaperone
source organism Synechococcus sp.
publication title Structure and Function of RbcX, an Assembly Chaperone for Hexadecameric Rubisco.
pubmed doi rcsb
molecule keywords ORF134
total genus 49
structure length 110
sequence length 110
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2007-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02341 RcbX RbcX protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2penA00
2PEIA 2Z44A 2PENA 3RG6C 2PEMA 2Z46A 2PEQA 4GR2A 4GR6A 2PEJA 2PY8A 3HYBA 3Q20A 5BS1A 5BS2A 2PEOA 2PEKA 2Z45A
chains in the Genus database with same CATH superfamily
2KR5A 2VLQA 4GR2A 4PH0A 1HY8A 2BHVA 3CE7A 2OARA 2K5XA 3E2DA 2XV6A 1OR5A 2AFDA 1VHNA 4CA3A 4IPYA 4U0CA 3CCSP 1BXIA 5F2KA 3H0DA 3CPWO 1YHQP 3GZMA 2FQ1A 2K94A 3M1MA 3G28A 2GDXA 4UHPB 2DNWA 2DGYA 2PEMA 2N5IA 2GDWA 2NO8A 2BUOA 1VQ5P 1Q86Q 3B5IA 4XFZA 1GXGA 2JYGA 2L0QA 1UNKA 2AVAA 4H2YC 2MVVA 3DS5A 1N8RQ 2AFEA 4GR6A 4PWVB 1VQ9P 1VQKP 2LMLA 3P05A 2MD9A 2KGDA 2K0YA 2L9FA 2QNWA 4R0MA 1EMVA 3NY7B 3G21A 3G1IA 3Q20A 2GZEA 2M5RA 2KODA 3CMEP 1M90Q 2KG6A 3DS2A 3CC2P 2MR7A 2KG9A 2K0XA 3G29A 2K0DX 3EJBA 4F37A 3GKLC 5BS1A 1X3OA 4QNBA 2XZ0D 1RO2A 3CD6P 2PEQA 2FAEA 2L6EA 4XFYA 3G1GA 2MY5A 2XZ1C 2P9XA 2JYLA 1YIJP 5HV8A 2N98A 2PEJA 1ACPA 1CEIA 2JGPA 2FVAA 2FACA 1EIAA 2KGAA 2PEOA 3G71P 2VSQA 3HYBA 4COCA 2M8LA 4M0IA 3EJEA 2QA4P 2CNRA 2MF4A 3CC7P 2M8NA 3CXCO 2EG5A 2FQ0A 2K2QA 1VQ6P 1QRJA 1D1DA 1K30A 2GDYA 1ZNVA 2XXMA 4COPA 5HGNA 3LRYA 3CC4P 1F80D 2VLNA 2OTJP 2QEXP 1RO0A 3HZQA 1JJ2O 5KP6B 2PY8A 2GZJA 4U0FA 2FVFA 5HGMA 4U0EA 2JO0A 2N50A 3G26A 2LKIA 4XFXA 3H47A 2FQ2A 3MGEA 1VQ7P 4H2WC 2MVUA 3WBHA 1VQLP 4BPHA 2KOQA 1Q82Q 2JB0A 1K8AQ 3G4SP 2LOLA 4PXHB 2KORA 2LTEA 3U43A 3DS0A 2CWOA 3DS4A 2ERHA 5EW5E 2EIAA 3RG2A 1AUMA 3CCJP 1Q7YQ 2GZIA 2VLOA 4NEOA 5DCKA 1M6NA 4U0AA 1Q81Q 4U0DA 2E1MA 2CGQA 2PNGA 1VQPP 1VQ8P 5JPAA 4BPFA 3H4EA 3CCEP 1VQMP 4QKOA 3B4QA 2JQ4A 3CCQP 1GPJA 1YI2P 2LIUA 5KP8B 2PEIA 3VRLC 3NTEA 1S72P 5EJDA 3EJDA 2KWLA 2FVEA 1KLPA 1KC8Q 2Z45A 2N5HA 3RG6C 2K92A 1YJWP 1ZMBA 1K9MQ 2N6ZA 1NQ4A 3G6EP 4DG9A 2JBGA 4IZ6A 1YJ9P 2GZGA 2MR8A 4XROA 2PENA 1VQ4P 3CCLP 2Z46A 3DS3A 2XT1A 2CG5B 3CCMP 3OW2O 4U0BA 4BPGA 2JU2A 2LIWA 1L0HA 2X2BA 7CEIA 2LL8A 1W2BO 1DV5A 1A43A 2CQ8A 5HGLA 2FADA 4XRQA 1VQOP 4HKGA 1FR2A 2GYKA 1HQBA 5BS2A 2GZFA 1RNIA 2L22A 2ROQA 5I4TG 4WYMA 1VQNP 2LPKA 2KGCA 2KOOA 1QVGO 3GZLA 2L4BA 1KD1Q 1L0IA 3I56P 2KGEA 1GXHA 1UJZA 1T8KA 1EOQA 1IMPA 1M74A 2M8PA 1IMQA 3CCRP 5F2NA 1AYIA 5KP7B 1MZ8A 3CCVP 2EFJA 3CMAP 1VKUA 2EHTA 2JU1A 3LMOA 3CCUP 1DNYA 3DS1A 1M6EX 2PEKA 2JAZA 2KOSA 3DTJA 1AF8A 1A8OA 5F2OA 2AF8A 2KOPA 1Z6MA 4MRTC 1NJIQ 2VLPA 1E6JP 1M1KQ 1KQSO 5CZDB 1QVFO 2K93A 2KG8A 2N6YA 5HVCA 2FHSC 3I55P 4H2XC 2WPTA 1YITP 1IUQA 2OTLP 4PH1A 2KW2A 1YJNP 5HGOA 2ONTA 3GJNA 3G0VA 2EHSA 1BAJA 3DPHA 1K73Q 1E0HA 2LF4A 2Z44A
chains in the Genus database with same CATH topology
1QVGO 2KODA 4GR2A 3CMEP 1M90Q 1KD1Q 4PH0A 3I56P 3DS0A 3DS2A 2CWOA 3DS4A 2BHVA 3CC2P 2EIAA 1AUMA 3CCJP 2OARA 1Q7YQ 3E2DA 2XV6A 3G29A 1EOQA 1M74A 2M8PA 5BS1A 5DCKA 4IPYA 3CCRP 5F2NA 4QNBA 4U0CA 3CCVP 2Z44A 1RO2A 2EFJA 3CD6P 3CMAP 2PEQA 1M6NA 4U0AA 2L6EA 3CCSP 1Q81Q 4XFYA 4U0DA 2E1MA 3G1GA 5F2KA 1VQPP 2P9XA 1VQ8P 3H0DA 2JYLA 3CPWO 5JPAA 3H4EA 3CCUP 1YIJP 3CCEP 2PEJA 1VQMP 3DS1A 1YHQP 1M6EX 3M1MA 2PEKA 3CCQP 3G28A 1EIAA 3DTJA 1YI2P 2PEOA 2PEIA 2DGYA 1A8OA 3VRLC 3G71P 2PEMA 3NTEA 1S72P 5F2OA 3HYBA 4COCA 1KC8Q 2M8LA 2BUOA 1VQ5P 2Z45A 4M0IA 1Q86Q 3B5IA 3RG6C 2QA4P 4XFZA 1YJWP 1ZMBA 1K9MQ 3G6EP 2JYGA 3CC7P 2M8NA 3CXCO 2EG5A 1NJIQ 1YJ9P 1VQ6P 1QRJA 1E6JP 1M1KQ 1KQSO 1D1DA 1QVFO 3DS5A 2PENA 1K30A 4XROA 1N8RQ 2XXMA 4COPA 5HGNA 4GR6A 3LRYA 3CC4P 1VQ4P 3CCLP 2Z46A 3DS3A 2OTJP 2XT1A 3I55P 2QEXP 1RO0A 3HZQA 1JJ2O 1VQ9P 1VQKP 3CCMP 3P05A 3OW2O 1YITP 2PY8A 1IUQA 4U0BA 4U0FA 2OTLP 5HGMA 4U0EA 2JO0A 1W2BO 4PH1A 3G26A 1YJNP 5HGOA 2ONTA 1A43A 5HGLA 4XFXA 3G0VA 3H47A 4XRQA 3MGEA 1VQ7P 1VQOP 3WBHA 5BS2A 1BAJA 1VQLP 3DPHA 1RNIA 1K73Q 5I4TG 4WYMA 1Q82Q 1K8AQ 1VQNP 3G21A 3G1IA 3G4SP 2LF4A 3Q20A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PEI A;  2Z44 A;  2PEN A;  3RG6 C;  2PEM A;  2Z46 A;  2PEQ A;  4GR2 A;  4GR6 A;  2PEJ A;  2PY8 A;  3HYB A;  3Q20 A;  5BS1 A;  5BS2 A;  2PEO A;  2PEK A;  2Z45 A; 
#chains in the Genus database with same CATH topology
 2KR5 A;  2VLQ A;  4GR2 A;  4PH0 A;  1HY8 A;  2BHV A;  3CE7 A;  2OAR A;  2K5X A;  3E2D A;  2XV6 A;  1OR5 A;  2AFD A;  1VHN A;  4CA3 A;  4IPY A;  4U0C A;  3CCS P;  1BXI A;  5F2K A;  3H0D A;  3CPW O;  1YHQ P;  3GZM A;  2FQ1 A;  2K94 A;  3M1M A;  3G28 A;  2GDX A;  4UHP B;  2DNW A;  2DGY A;  2PEM A;  2N5I A;  2GDW A;  2NO8 A;  2BUO A;  1VQ5 P;  1Q86 Q;  3B5I A;  4XFZ A;  1GXG A;  2JYG A;  2L0Q A;  1UNK A;  2AVA A;  4H2Y C;  2MVV A;  3DS5 A;  1N8R Q;  2AFE A;  4GR6 A;  4PWV B;  1VQ9 P;  1VQK P;  2LML A;  3P05 A;  2MD9 A;  2KGD A;  2K0Y A;  2L9F A;  2QNW A;  4R0M A;  1EMV A;  3NY7 B;  3G21 A;  3G1I A;  3Q20 A;  2GZE A;  2M5R A;  2KOD A;  3CME P;  1M90 Q;  2KG6 A;  3DS2 A;  3CC2 P;  2MR7 A;  2KG9 A;  2K0X A;  3G29 A;  2K0D X;  3EJB A;  4F37 A;  3GKL C;  5BS1 A;  1X3O A;  4QNB A;  2XZ0 D;  1RO2 A;  3CD6 P;  2PEQ A;  2FAE A;  2L6E A;  4XFY A;  3G1G A;  2MY5 A;  2XZ1 C;  2P9X A;  2JYL A;  1YIJ P;  5HV8 A;  2N98 A;  2PEJ A;  1ACP A;  1CEI A;  2JGP A;  2FVA A;  2FAC A;  1EIA A;  2KGA A;  2PEO A;  3G71 P;  2VSQ A;  3HYB A;  4COC A;  2M8L A;  4M0I A;  3EJE A;  2QA4 P;  2CNR A;  2MF4 A;  3CC7 P;  2M8N A;  3CXC O;  2EG5 A;  2FQ0 A;  2K2Q A;  1VQ6 P;  1QRJ A;  1D1D A;  1K30 A;  2GDY A;  1ZNV A;  2XXM A;  4COP A;  5HGN A;  3LRY A;  3CC4 P;  1F80 D;  2VLN A;  2OTJ P;  2QEX P;  1RO0 A;  3HZQ A;  1JJ2 O;  5KP6 B;  2PY8 A;  2GZJ A;  4U0F A;  2FVF A;  5HGM A;  4U0E A;  2JO0 A;  2N50 A;  3G26 A;  2LKI A;  4XFX A;  3H47 A;  2FQ2 A;  3MGE A;  1VQ7 P;  4H2W C;  2MVU A;  3WBH A;  1VQL P;  4BPH A;  2KOQ A;  1Q82 Q;  2JB0 A;  1K8A Q;  3G4S P;  2LOL A;  4PXH B;  2KOR A;  2LTE A;  3U43 A;  3DS0 A;  2CWO A;  3DS4 A;  2ERH A;  5EW5 E;  2EIA A;  3RG2 A;  1AUM A;  3CCJ P;  1Q7Y Q;  2GZI A;  2VLO A;  4NEO A;  5DCK A;  1M6N A;  4U0A A;  1Q81 Q;  4U0D A;  2E1M A;  2CGQ A;  2PNG A;  1VQP P;  1VQ8 P;  5JPA A;  4BPF A;  3H4E A;  3CCE P;  1VQM P;  4QKO A;  3B4Q A;  2JQ4 A;  3CCQ P;  1GPJ A;  1YI2 P;  2LIU A;  5KP8 B;  2PEI A;  3VRL C;  3NTE A;  1S72 P;  5EJD A;  3EJD A;  2KWL A;  2FVE A;  1KLP A;  1KC8 Q;  2Z45 A;  2N5H A;  3RG6 C;  2K92 A;  1YJW P;  1ZMB A;  1K9M Q;  2N6Z A;  1NQ4 A;  3G6E P;  4DG9 A;  2JBG A;  4IZ6 A;  1YJ9 P;  2GZG A;  2MR8 A;  4XRO A;  2PEN A;  1VQ4 P;  3CCL P;  2Z46 A;  3DS3 A;  2XT1 A;  2CG5 B;  3CCM P;  3OW2 O;  4U0B A;  4BPG A;  2JU2 A;  2LIW A;  1L0H A;  2X2B A;  7CEI A;  2LL8 A;  1W2B O;  1DV5 A;  1A43 A;  2CQ8 A;  5HGL A;  2FAD A;  4XRQ A;  1VQO P;  4HKG A;  1FR2 A;  2GYK A;  1HQB A;  5BS2 A;  2GZF A;  1RNI A;  2L22 A;  2ROQ A;  5I4T G;  4WYM A;  1VQN P;  2LPK A;  2KGC A;  2KOO A;  1QVG O;  3GZL A;  2L4B A;  1KD1 Q;  1L0I A;  3I56 P;  2KGE A;  1GXH A;  1UJZ A;  1T8K A;  1EOQ A;  1IMP A;  1M74 A;  2M8P A;  1IMQ A;  3CCR P;  5F2N A;  1AYI A;  5KP7 B;  1MZ8 A;  3CCV P;  2EFJ A;  3CMA P;  1VKU A;  2EHT A;  2JU1 A;  3LMO A;  3CCU P;  1DNY A;  3DS1 A;  1M6E X;  2PEK A;  2JAZ A;  2KOS A;  3DTJ A;  1AF8 A;  1A8O A;  5F2O A;  2AF8 A;  2KOP A;  1Z6M A;  4MRT C;  1NJI Q;  2VLP A;  1E6J P;  1M1K Q;  1KQS O;  5CZD B;  1QVF O;  2K93 A;  2KG8 A;  2N6Y A;  5HVC A;  2FHS C;  3I55 P;  4H2X C;  2WPT A;  1YIT P;  1IUQ A;  2OTL P;  4PH1 A;  2KW2 A;  1YJN P;  5HGO A;  2ONT A;  3GJN A;  3G0V A;  2EHS A;  1BAJ A;  3DPH A;  1K73 Q;  1E0H A;  2LF4 A;  2Z44 A; 
#chains in the Genus database with same CATH homology
 1QVG O;  2KOD A;  4GR2 A;  3CME P;  1M90 Q;  1KD1 Q;  4PH0 A;  3I56 P;  3DS0 A;  3DS2 A;  2CWO A;  3DS4 A;  2BHV A;  3CC2 P;  2EIA A;  1AUM A;  3CCJ P;  2OAR A;  1Q7Y Q;  3E2D A;  2XV6 A;  3G29 A;  1EOQ A;  1M74 A;  2M8P A;  5BS1 A;  5DCK A;  4IPY A;  3CCR P;  5F2N A;  4QNB A;  4U0C A;  3CCV P;  2Z44 A;  1RO2 A;  2EFJ A;  3CD6 P;  3CMA P;  2PEQ A;  1M6N A;  4U0A A;  2L6E A;  3CCS P;  1Q81 Q;  4XFY A;  4U0D A;  2E1M A;  3G1G A;  5F2K A;  1VQP P;  2P9X A;  1VQ8 P;  3H0D A;  2JYL A;  3CPW O;  5JPA A;  3H4E A;  3CCU P;  1YIJ P;  3CCE P;  2PEJ A;  1VQM P;  3DS1 A;  1YHQ P;  1M6E X;  3M1M A;  2PEK A;  3CCQ P;  3G28 A;  1EIA A;  3DTJ A;  1YI2 P;  2PEO A;  2PEI A;  2DGY A;  1A8O A;  3VRL C;  3G71 P;  2PEM A;  3NTE A;  1S72 P;  5F2O A;  3HYB A;  4COC A;  1KC8 Q;  2M8L A;  2BUO A;  1VQ5 P;  2Z45 A;  4M0I A;  1Q86 Q;  3B5I A;  3RG6 C;  2QA4 P;  4XFZ A;  1YJW P;  1ZMB A;  1K9M Q;  3G6E P;  2JYG A;  3CC7 P;  2M8N A;  3CXC O;  2EG5 A;  1NJI Q;  1YJ9 P;  1VQ6 P;  1QRJ A;  1E6J P;  1M1K Q;  1KQS O;  1D1D A;  1QVF O;  3DS5 A;  2PEN A;  1K30 A;  4XRO A;  1N8R Q;  2XXM A;  4COP A;  5HGN A;  4GR6 A;  3LRY A;  3CC4 P;  1VQ4 P;  3CCL P;  2Z46 A;  3DS3 A;  2OTJ P;  2XT1 A;  3I55 P;  2QEX P;  1RO0 A;  3HZQ A;  1JJ2 O;  1VQ9 P;  1VQK P;  3CCM P;  3P05 A;  3OW2 O;  1YIT P;  2PY8 A;  1IUQ A;  4U0B A;  4U0F A;  2OTL P;  5HGM A;  4U0E A;  2JO0 A;  1W2B O;  4PH1 A;  3G26 A;  1YJN P;  5HGO A;  2ONT A;  1A43 A;  5HGL A;  4XFX A;  3G0V A;  3H47 A;  4XRQ A;  3MGE A;  1VQ7 P;  1VQO P;  3WBH A;  5BS2 A;  1BAJ A;  1VQL P;  3DPH A;  1RNI A;  1K73 Q;  5I4T G;  4WYM A;  1Q82 Q;  1K8A Q;  1VQN P;  3G21 A;  3G1I A;  3G4S P;  2LF4 A;  3Q20 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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