2PEOA

Crystal structure of rbcx from anabaena ca
Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
115
structure length
113
Chain Sequence
MNLKQIAKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSAGQDGEKYIEELFLEKPDLALRIMTVREHIAEEIAEFLPEMVVTGIQQANMEKRRQHLERMTQVSLSH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV1 (31-34)AH2 (35-45)EMPTYAH3 (52-62)AH4 (64-82)AH5 (84-113)AH1 (3-31)O1 (1-3)Updating...
connected with : NaN
molecule tags Chaperone
source organism Anabaena sp.
publication title Structure and Function of RbcX, an Assembly Chaperone for Hexadecameric Rubisco.
pubmed doi rcsb
molecule keywords RbcX protein
total genus 49
structure length 113
sequence length 115
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02341 RcbX RbcX protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 2peoA00
2PEOA 2PEQA 2PENA 4GR6A 3HYBA 2PEMA 2Z46A 2Z45A 2Z44A 2PEKA 2PEIA 3RG6C 4GR2A 2PEJA 5BS2A 5BS1A 3Q20A 2PY8A
chains in the Genus database with same CATH superfamily
2JYGA 3DS0A 2DNWA 2M8LA 2JO0A 5JPAA 7CEIA 1D1DA 4NEOA 1YHQP 1QVFO 2NO8A 2VLQA 1EOQA 2KODA 2FACA 4IPYA 2AFDA 1KD1Q 1NQ4A 3G1GA 2CNRA 2MR7A 1RNIA 2MR8A 3GKLC 4H2YC 2PEJA 5KP8B 1YJWP 4U0DA 2N6YA 1L0HA 3U43A 1AUMA 2VLPA 1Z6MA 1N8RQ 1KQSO 3CD6P 2OTJP 5HGLA 1VQKP 2QNWA 1YITP 2Z44A 2CGQA 1W2BO 2PY8A 1JJ2O 2PEQA 4XFXA 1GXHA 3CMEP 1X3OA 4UHPB 1EMVA 2JAZA 2KGEA 3LMOA 2PEMA 2JBGA 1M74A 3DPHA 2PEOA 3G71P 1VQNP 2AVAA 2XV6A 4R0MA 3CCMP 2LF4A 1L0IA 3G26A 5BS1A 2GZFA 1Q81Q 2VLNA 2PNGA 4H2XC 1QRJA 2EG5A 4IZ6A 1Q86Q 1EIAA 2FVFA 2L0QA 4BPHA 2GZJA 2EHSA 5BS2A 2N5IA 3DS5A 1FR2A 4XROA 1E0HA 2EFJA 3CCSP 4U0CA 3GZLA 4XRQA 4F37A 2M8PA 1IMPA 3GZMA 2AFEA 4U0EA 1VQ5P 5HGNA 3DS2A 3CCQP 3G29A 4MRTC 1A43A 4H2WC 2L9FA 2ROQA 3G28A 3CE7A 2KGCA 4XFYA 2K2QA 5HGOA 5HV8A 4COCA 2FADA 3B5IA 2MY5A 5DCKA 2MF4A 3I56P 2PEKA 2LKIA 3NTEA 1E6JP 3OW2O 1S72P 2FQ2A 3GJNA 1VQ4P 2L22A 3G6EP 1VQPP 5EW5E 2FQ0A 2GDWA 1K8AQ 1QVGO 2X2BA 2PEIA 2FQ1A 2K0YA 1HY8A 1AF8A 4DG9A 2CWOA 3DS1A 2LMLA 3P05A 2L6EA 1Q7YQ 2N6ZA 3G21A 1M6EX 1UJZA 3Q20A 2M8NA 5HGMA 1KLPA 3EJDA 2K92A 2LOLA 3CC7P 3MGEA 2KG6A 5HVCA 1M90Q 2JU2A 1IMQA 5KP6B 3CCEP 1M6NA 2GZEA 2LTEA 1VQLP 3I55P 4XFZA 3CXCO 2QA4P 2K5XA 1VQ8P 5F2KA 4QNBA 2Z45A 2KGAA 2FHSC 1Q82Q 4BPGA 1VHNA 2KG8A 1OR5A 1AYIA 3HYBA 1HQBA 2QEXP 1BXIA 4QKOA 4U0FA 4COPA 1ZMBA 3G4SP 2EHTA 2KORA 3HZQA 3VRLC 1DV5A 2JB0A 4U0BA 3E2DA 1K30A 2MVUA 4PWVB 3CCUP 2FAEA 2K93A 3NY7B 3CCJP 3M1MA 3H47A 3DTJA 2GZGA 2ONTA 1VQOP 4PH1A 3WBHA 2VSQA 2PENA 2CG5B 2GZIA 2XXMA 1K9MQ 4HKGA 3EJBA 4PH0A 2N98A 3CPWO 2P9XA 2FVEA 2L4BA 1VKUA 1IUQA 2MVVA 2WPTA 1VQ7P 4U0AA 2LIWA 2JU1A 1VQMP 3CC2P 1RO2A 2OTLP 2GDXA 2K94A 2KWLA 3G0VA 2DGYA 2LPKA 1GPJA 3CMAP 3DS3A 2KW2A 2XZ1C 5F2OA 1RO0A 2LL8A 3LRYA 2N5HA 4GR2A 3DS4A 1A8OA 3H0DA 2GDYA 1F80D 2OARA 2XZ0D 1K73Q 4PXHB 5I4TG 3EJEA 4BPFA 5F2NA 3CCLP 3G1IA 3H4EA 4CA3A 2AF8A 2Z46A 1T8KA 3RG6C 1VQ9P 2JYLA 1GXGA 3CC4P 1YJ9P 2KOQA 1VQ6P 2ERHA 1NJIQ 2CQ8A 2GYKA 3CCVP 2VLOA 2K0XA 1MZ8A 2JGPA 2KG9A 2FVAA 1YJNP 1YIJP 2BHVA 2E1MA 2KR5A 2KOSA 2KOPA 2KGDA 1KC8Q 1ACPA 2EIAA 2LIUA 1CEIA 4M0IA 1YI2P 5KP7B 3RG2A 1UNKA 3B4QA 2K0DX 4WYMA 2M5RA 5EJDA 2BUOA 2N50A 3CCRP 5CZDB 4GR6A 2XT1A 1M1KQ 1BAJA 2KOOA 1ZNVA 2JQ4A 2MD9A 1DNYA
chains in the Genus database with same CATH topology
2JYGA 2M8NA 5HGMA 1QRJA 3DS0A 3G0VA 2EG5A 2M8LA 2JO0A 1Q86Q 1EIAA 2DGYA 5JPAA 3CMAP 1D1DA 3DS3A 5BS2A 3CC7P 5F2OA 1YHQP 1RO0A 3LRYA 1QVFO 3DS5A 3MGEA 4XROA 1EOQA 1M90Q 4GR2A 2EFJA 3DS4A 3CCEP 2KODA 3CCSP 1M6NA 1A8OA 4U0CA 3H0DA 1VQLP 3I55P 4XRQA 4XFZA 4IPYA 3CXCO 2M8PA 1KD1Q 3G1GA 2QA4P 2OARA 1VQ8P 5F2KA 4QNBA 2Z45A 1K73Q 5I4TG 1Q82Q 5F2NA 1Q81Q 1RNIA 4U0EA 1VQ5P 5HGNA 3CCLP 2PEJA 3DS2A 3G1IA 3CCQP 3G29A 3H4EA 3HYBA 1A43A 2QEXP 2Z46A 3RG6C 1VQ9P 2JYLA 1YJWP 4U0DA 4U0FA 4COPA 1ZMBA 3G28A 3CC4P 3G4SP 1AUMA 4XFYA 1YJ9P 3HZQA 5HGOA 3VRLC 1VQ6P 1NJIQ 4U0BA 1N8RQ 3CCVP 1KQSO 3CD6P 2OTJP 3E2DA 4COCA 5HGLA 3B5IA 1VQKP 1K30A 5DCKA 1YITP 3CCUP 3I56P 2Z44A 2PEKA 3CCJP 3M1MA 1W2BO 3H47A 2PY8A 3DTJA 3NTEA 1E6JP 2PEQA 3OW2O 1YIJP 1YJNP 2BHVA 1S72P 2ONTA 1JJ2O 4XFXA 1VQOP 2E1MA 1VQ4P 3CMEP 3G6EP 4PH1A 3WBHA 2PENA 1KC8Q 1VQPP 2XXMA 1K9MQ 2EIAA 4PH0A 2PEMA 1K8AQ 1QVGO 2PEIA 4M0IA 3CPWO 1M74A 3DPHA 2PEOA 2P9XA 1YI2P 3G71P 4WYMA 1IUQA 2CWOA 3DS1A 2BUOA 3CCRP 1VQ7P 1VQNP 2XV6A 3CCMP 4GR6A 2XT1A 1M1KQ 4U0AA 1BAJA 1VQMP 3P05A 3CC2P 1RO2A 2L6EA 2LF4A 3G26A 2OTLP 1Q7YQ 5BS1A 3G21A 1M6EX 3Q20A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PEO A;  2PEQ A;  2PEN A;  4GR6 A;  3HYB A;  2PEM A;  2Z46 A;  2Z45 A;  2Z44 A;  2PEK A;  2PEI A;  3RG6 C;  4GR2 A;  2PEJ A;  5BS2 A;  5BS1 A;  3Q20 A;  2PY8 A; 
#chains in the Genus database with same CATH topology
 2JYG A;  3DS0 A;  2DNW A;  2M8L A;  2JO0 A;  5JPA A;  7CEI A;  1D1D A;  4NEO A;  1YHQ P;  1QVF O;  2NO8 A;  2VLQ A;  1EOQ A;  2KOD A;  2FAC A;  4IPY A;  2AFD A;  1KD1 Q;  1NQ4 A;  3G1G A;  2CNR A;  2MR7 A;  1RNI A;  2MR8 A;  3GKL C;  4H2Y C;  2PEJ A;  5KP8 B;  1YJW P;  4U0D A;  2N6Y A;  1L0H A;  3U43 A;  1AUM A;  2VLP A;  1Z6M A;  1N8R Q;  1KQS O;  3CD6 P;  2OTJ P;  5HGL A;  1VQK P;  2QNW A;  1YIT P;  2Z44 A;  2CGQ A;  1W2B O;  2PY8 A;  1JJ2 O;  2PEQ A;  4XFX A;  1GXH A;  3CME P;  1X3O A;  4UHP B;  1EMV A;  2JAZ A;  2KGE A;  3LMO A;  2PEM A;  2JBG A;  1M74 A;  3DPH A;  2PEO A;  3G71 P;  1VQN P;  2AVA A;  2XV6 A;  4R0M A;  3CCM P;  2LF4 A;  1L0I A;  3G26 A;  5BS1 A;  2GZF A;  1Q81 Q;  2VLN A;  2PNG A;  4H2X C;  1QRJ A;  2EG5 A;  4IZ6 A;  1Q86 Q;  1EIA A;  2FVF A;  2L0Q A;  4BPH A;  2GZJ A;  2EHS A;  5BS2 A;  2N5I A;  3DS5 A;  1FR2 A;  4XRO A;  1E0H A;  2EFJ A;  3CCS P;  4U0C A;  3GZL A;  4XRQ A;  4F37 A;  2M8P A;  1IMP A;  3GZM A;  2AFE A;  4U0E A;  1VQ5 P;  5HGN A;  3DS2 A;  3CCQ P;  3G29 A;  4MRT C;  1A43 A;  4H2W C;  2L9F A;  2ROQ A;  3G28 A;  3CE7 A;  2KGC A;  4XFY A;  2K2Q A;  5HGO A;  5HV8 A;  4COC A;  2FAD A;  3B5I A;  2MY5 A;  5DCK A;  2MF4 A;  3I56 P;  2PEK A;  2LKI A;  3NTE A;  1E6J P;  3OW2 O;  1S72 P;  2FQ2 A;  3GJN A;  1VQ4 P;  2L22 A;  3G6E P;  1VQP P;  5EW5 E;  2FQ0 A;  2GDW A;  1K8A Q;  1QVG O;  2X2B A;  2PEI A;  2FQ1 A;  2K0Y A;  1HY8 A;  1AF8 A;  4DG9 A;  2CWO A;  3DS1 A;  2LML A;  3P05 A;  2L6E A;  1Q7Y Q;  2N6Z A;  3G21 A;  1M6E X;  1UJZ A;  3Q20 A;  2M8N A;  5HGM A;  1KLP A;  3EJD A;  2K92 A;  2LOL A;  3CC7 P;  3MGE A;  2KG6 A;  5HVC A;  1M90 Q;  2JU2 A;  1IMQ A;  5KP6 B;  3CCE P;  1M6N A;  2GZE A;  2LTE A;  1VQL P;  3I55 P;  4XFZ A;  3CXC O;  2QA4 P;  2K5X A;  1VQ8 P;  5F2K A;  4QNB A;  2Z45 A;  2KGA A;  2FHS C;  1Q82 Q;  4BPG A;  1VHN A;  2KG8 A;  1OR5 A;  1AYI A;  3HYB A;  1HQB A;  2QEX P;  1BXI A;  4QKO A;  4U0F A;  4COP A;  1ZMB A;  3G4S P;  2EHT A;  2KOR A;  3HZQ A;  3VRL C;  1DV5 A;  2JB0 A;  4U0B A;  3E2D A;  1K30 A;  2MVU A;  4PWV B;  3CCU P;  2FAE A;  2K93 A;  3NY7 B;  3CCJ P;  3M1M A;  3H47 A;  3DTJ A;  2GZG A;  2ONT A;  1VQO P;  4PH1 A;  3WBH A;  2VSQ A;  2PEN A;  2CG5 B;  2GZI A;  2XXM A;  1K9M Q;  4HKG A;  3EJB A;  4PH0 A;  2N98 A;  3CPW O;  2P9X A;  2FVE A;  2L4B A;  1VKU A;  1IUQ A;  2MVV A;  2WPT A;  1VQ7 P;  4U0A A;  2LIW A;  2JU1 A;  1VQM P;  3CC2 P;  1RO2 A;  2OTL P;  2GDX A;  2K94 A;  2KWL A;  3G0V A;  2DGY A;  2LPK A;  1GPJ A;  3CMA P;  3DS3 A;  2KW2 A;  2XZ1 C;  5F2O A;  1RO0 A;  2LL8 A;  3LRY A;  2N5H A;  4GR2 A;  3DS4 A;  1A8O A;  3H0D A;  2GDY A;  1F80 D;  2OAR A;  2XZ0 D;  1K73 Q;  4PXH B;  5I4T G;  3EJE A;  4BPF A;  5F2N A;  3CCL P;  3G1I A;  3H4E A;  4CA3 A;  2AF8 A;  2Z46 A;  1T8K A;  3RG6 C;  1VQ9 P;  2JYL A;  1GXG A;  3CC4 P;  1YJ9 P;  2KOQ A;  1VQ6 P;  2ERH A;  1NJI Q;  2CQ8 A;  2GYK A;  3CCV P;  2VLO A;  2K0X A;  1MZ8 A;  2JGP A;  2KG9 A;  2FVA A;  1YJN P;  1YIJ P;  2BHV A;  2E1M A;  2KR5 A;  2KOS A;  2KOP A;  2KGD A;  1KC8 Q;  1ACP A;  2EIA A;  2LIU A;  1CEI A;  4M0I A;  1YI2 P;  5KP7 B;  3RG2 A;  1UNK A;  3B4Q A;  2K0D X;  4WYM A;  2M5R A;  5EJD A;  2BUO A;  2N50 A;  3CCR P;  5CZD B;  4GR6 A;  2XT1 A;  1M1K Q;  1BAJ A;  2KOO A;  1ZNV A;  2JQ4 A;  2MD9 A;  1DNY A; 
#chains in the Genus database with same CATH homology
 2JYG A;  2M8N A;  5HGM A;  1QRJ A;  3DS0 A;  3G0V A;  2EG5 A;  2M8L A;  2JO0 A;  1Q86 Q;  1EIA A;  2DGY A;  5JPA A;  3CMA P;  1D1D A;  3DS3 A;  5BS2 A;  3CC7 P;  5F2O A;  1YHQ P;  1RO0 A;  3LRY A;  1QVF O;  3DS5 A;  3MGE A;  4XRO A;  1EOQ A;  1M90 Q;  4GR2 A;  2EFJ A;  3DS4 A;  3CCE P;  2KOD A;  3CCS P;  1M6N A;  1A8O A;  4U0C A;  3H0D A;  1VQL P;  3I55 P;  4XRQ A;  4XFZ A;  4IPY A;  3CXC O;  2M8P A;  1KD1 Q;  3G1G A;  2QA4 P;  2OAR A;  1VQ8 P;  5F2K A;  4QNB A;  2Z45 A;  1K73 Q;  5I4T G;  1Q82 Q;  5F2N A;  1Q81 Q;  1RNI A;  4U0E A;  1VQ5 P;  5HGN A;  3CCL P;  2PEJ A;  3DS2 A;  3G1I A;  3CCQ P;  3G29 A;  3H4E A;  3HYB A;  1A43 A;  2QEX P;  2Z46 A;  3RG6 C;  1VQ9 P;  2JYL A;  1YJW P;  4U0D A;  4U0F A;  4COP A;  1ZMB A;  3G28 A;  3CC4 P;  3G4S P;  1AUM A;  4XFY A;  1YJ9 P;  3HZQ A;  5HGO A;  3VRL C;  1VQ6 P;  1NJI Q;  4U0B A;  1N8R Q;  3CCV P;  1KQS O;  3CD6 P;  2OTJ P;  3E2D A;  4COC A;  5HGL A;  3B5I A;  1VQK P;  1K30 A;  5DCK A;  1YIT P;  3CCU P;  3I56 P;  2Z44 A;  2PEK A;  3CCJ P;  3M1M A;  1W2B O;  3H47 A;  2PY8 A;  3DTJ A;  3NTE A;  1E6J P;  2PEQ A;  3OW2 O;  1YIJ P;  1YJN P;  2BHV A;  1S72 P;  2ONT A;  1JJ2 O;  4XFX A;  1VQO P;  2E1M A;  1VQ4 P;  3CME P;  3G6E P;  4PH1 A;  3WBH A;  2PEN A;  1KC8 Q;  1VQP P;  2XXM A;  1K9M Q;  2EIA A;  4PH0 A;  2PEM A;  1K8A Q;  1QVG O;  2PEI A;  4M0I A;  3CPW O;  1M74 A;  3DPH A;  2PEO A;  2P9X A;  1YI2 P;  3G71 P;  4WYM A;  1IUQ A;  2CWO A;  3DS1 A;  2BUO A;  3CCR P;  1VQ7 P;  1VQN P;  2XV6 A;  3CCM P;  4GR6 A;  2XT1 A;  1M1K Q;  4U0A A;  1BAJ A;  1VQM P;  3P05 A;  3CC2 P;  1RO2 A;  2L6E A;  2LF4 A;  3G26 A;  2OTL P;  1Q7Y Q;  5BS1 A;  3G21 A;  1M6E X;  3Q20 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.