2VLOA

K97a mutant of e9 dnase domain in complex with im9
Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
90
structure length
90
Chain Sequence
KHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQGLEHHHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (7-9)AH4 (64-78)AH1 (12-24)O1 (25-27)EMPTYTI1 (46-49)AH3 (50-54)TII1 (57-60)AH2 (30-44)Updating...
connected with : NaN
molecule tags Protein binding
source organism Escherichia coli
publication title Experimental and Computational Analyses of the Energetic Basis for Dual Recognition of Immunity Proteins by Colicin Endonucleases.
pubmed doi rcsb
molecule keywords COLICIN-E9 IMMUNITY PROTEIN
total genus 28
structure length 90
sequence length 90
ec nomenclature
pdb deposition date 2008-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2vloA00
1EMVA 1IMPA 2K0DX 4F37A 1UNKA 2VLPA 2VLNA 7CEIA 1E0HA 2ERHA 1ZNVA 3GJNA 4QKOA 2GZEA 1BXIA 2JBGA 1FR2A 1IMQA 2NO8A 1CEIA 2VLQA 2GZFA 2JB0A 3GKLC 1GXGA 2GZIA 2GZGA 2K5XA 2JAZA 2WPTA 1UJZA 5EW5E 1GXHA 3U43A 2GZJA 2VLOA 4UHPB 2GYKA 1MZ8A 1AYIA
chains in the Genus database with same CATH superfamily
2FQ1A 2KW2A 2KG9A 1Z6MA 2XV6A 4H2WC 2L9FA 4U0AA 3GZMA 2M5RA 1VQNP 2PEQA 2KGAA 1K8AQ 1GXHA 2GYKA 1BAJA 3CC7P 2K92A 2L22A 5F2OA 1F80D 3DS1A 3CCUP 4U0CA 3CE7A 2MR8A 2P9XA 2VLQA 3EJEA 1L0HA 3G1GA 2CG5B 5HGLA 2AF8A 2CGQA 2KOQA 2LMLA 3DTJA 4HKGA 2Z45A 4GR2A 4U0BA 2X2BA 3RG6C 3HYBA 4BPFA 2JU2A 2ERHA 1EIAA 2JBGA 2N50A 2M8NA 4PWVB 3CCLP 2PNGA 2WPTA 5HGOA 3DS5A 2FADA 5BS1A 2VLOA 1VQ8P 1VHNA 1T8KA 2MVUA 1RO2A 2FACA 5DCKA 3DS3A 3GZLA 2M8PA 2KR5A 1M90Q 3EJBA 2EHTA 2JO0A 3P05A 2LIUA 1AYIA 2K0DX 2PEJA 4U0FA 2ROQA 2N6YA 1VQ9P 2KODA 2LOLA 3OW2O 1IUQA 2GDXA 1BXIA 1HQBA 1YJWP 1QVFO 4NEOA 2N5IA 1Q86Q 1ACPA 1GXGA 1X3OA 1YIJP 1K73Q 1JJ2O 2K5XA 3CXCO 3CCRP 3HZQA 3CPWO 2LF4A 4DG9A 4UHPB 1RO0A 1YJNP 3DPHA 4IPYA 2OTJP 3H4EA 5HGMA 3B5IA 2PENA 2LIWA 3VRLC 1VQOP 1YHQP 2CNRA 2QA4P 3GKLC 2PEOA 3G4SP 5KP6B 1ZMBA 3H47A 4QNBA 2EFJA 3LRYA 1IMPA 1EMVA 3CCEP 3G71P 4M0IA 4CA3A 2DNWA 4QKOA 3EJDA 5EJDA 1AF8A 2N6ZA 2GZFA 2ONTA 2KORA 2EG5A 1DNYA 4BPHA 3MGEA 3M1MA 1OR5A 2QEXP 2FVAA 3RG2A 2FHSC 3I55P 2GDYA 3I56P 5CZDB 1A8OA 3B4QA 2L0QA 1Q81Q 5JPAA 4XFYA 2FVEA 2XZ1C 3NY7B 3CCMP 2GZEA 2XXMA 2FQ0A 2XZ0D 1KC8Q 2KOSA 5KP7B 2MD9A 1YITP 4PXHB 3CMEP 2GZJA 2LL8A 1K9MQ 2JGPA 3H0DA 5HVCA 2K0XA 1L0IA 2CQ8A 3G1IA 1VKUA 5F2NA 3CCJP 4BPGA 1Q82Q 2QNWA 4MRTC 2JAZA 5BS2A 2FAEA 2OTLP 1M1KQ 2AFDA 1YJ9P 2JQ4A 3CC2P 3WBHA 3G6EP 1FR2A 1CEIA 1QRJA 3CMAP 2GZIA 2GZGA 3G29A 2VSQA 2CWOA 1EOQA 2Z44A 1M74A 4GR6A 2KOOA 1MZ8A 3CD6P 2VLPA 2VLNA 4PH0A 1S72P 4XFXA 1IMQA 2LKIA 2MY5A 2PY8A 2LPKA 3CCSP 5HV8A 2K93A 1NQ4A 1HY8A 2N98A 5F2KA 2BUOA 3CCQP 1KQSO 2KG8A 2KWLA 2BHVA 1VQ7P 2FVFA 2MR7A 4PH1A 1KLPA 2K2QA 4H2YC 2KGDA 3CC4P 1VQMP 1A43A 5KP8B 3NTEA 2KGEA 2L6EA 1VQ6P 1UJZA 1M6NA 3U43A 2JYLA 1M6EX 2FQ2A 2MVVA 1ZNVA 1K30A 2AVAA 1QVGO 2JB0A 2JU1A 2KOPA 1RNIA 4XRQA 5I4TG 4IZ6A 4U0EA 1GPJA 3E2DA 2PEMA 1VQ4P 1KD1Q 2N5HA 4XROA 2L4BA 2NO8A 1W2BO 2EIAA 4XFZA 2EHSA 5HGNA 1AUMA 2KGCA 2K94A 4R0MA 3G28A 4COCA 1D1DA 1Q7YQ 1NJIQ 1UNKA 1DV5A 2MF4A 2PEIA 3CCVP 2DGYA 2GDWA 3LMOA 2OARA 2K0YA 2M8LA 4COPA 5EW5E 2AFEA 1VQ5P 2KG6A 1N8RQ 4H2XC 3Q20A 1VQLP 4F37A 1YI2P 7CEIA 1E0HA 4WYMA 3GJNA 2Z46A 3DS4A 2LTEA 3G26A 2PEKA 4U0DA 3G0VA 3DS2A 1E6JP 2E1MA 3DS0A 2JYGA 2XT1A 3G21A 1VQPP 1VQKP
chains in the Genus database with same CATH topology
1EMVA 1IMPA 2K0DX 4F37A 1UNKA 2VLPA 2VLNA 7CEIA 1E0HA 2ERHA 1ZNVA 3GJNA 4QKOA 2GZEA 1BXIA 2JBGA 1FR2A 1IMQA 2NO8A 1CEIA 2VLQA 2GZFA 2JB0A 3GKLC 1GXGA 2GZIA 2GZGA 2K5XA 2JAZA 2WPTA 1UJZA 5EW5E 1GXHA 3U43A 2GZJA 2VLOA 4UHPB 2GYKA 1MZ8A 1AYIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EMV A;  1IMP A;  2K0D X;  4F37 A;  1UNK A;  2VLP A;  2VLN A;  7CEI A;  1E0H A;  2ERH A;  1ZNV A;  3GJN A;  4QKO A;  2GZE A;  1BXI A;  2JBG A;  1FR2 A;  1IMQ A;  2NO8 A;  1CEI A;  2VLQ A;  2GZF A;  2JB0 A;  3GKL C;  1GXG A;  2GZI A;  2GZG A;  2K5X A;  2JAZ A;  2WPT A;  1UJZ A;  5EW5 E;  1GXH A;  3U43 A;  2GZJ A;  2VLO A;  4UHP B;  2GYK A;  1MZ8 A;  1AYI A; 
#chains in the Genus database with same CATH topology
 2FQ1 A;  2KW2 A;  2KG9 A;  1Z6M A;  2XV6 A;  4H2W C;  2L9F A;  4U0A A;  3GZM A;  2M5R A;  1VQN P;  2PEQ A;  2KGA A;  1K8A Q;  1GXH A;  2GYK A;  1BAJ A;  3CC7 P;  2K92 A;  2L22 A;  5F2O A;  1F80 D;  3DS1 A;  3CCU P;  4U0C A;  3CE7 A;  2MR8 A;  2P9X A;  2VLQ A;  3EJE A;  1L0H A;  3G1G A;  2CG5 B;  5HGL A;  2AF8 A;  2CGQ A;  2KOQ A;  2LML A;  3DTJ A;  4HKG A;  2Z45 A;  4GR2 A;  4U0B A;  2X2B A;  3RG6 C;  3HYB A;  4BPF A;  2JU2 A;  2ERH A;  1EIA A;  2JBG A;  2N50 A;  2M8N A;  4PWV B;  3CCL P;  2PNG A;  2WPT A;  5HGO A;  3DS5 A;  2FAD A;  5BS1 A;  2VLO A;  1VQ8 P;  1VHN A;  1T8K A;  2MVU A;  1RO2 A;  2FAC A;  5DCK A;  3DS3 A;  3GZL A;  2M8P A;  2KR5 A;  1M90 Q;  3EJB A;  2EHT A;  2JO0 A;  3P05 A;  2LIU A;  1AYI A;  2K0D X;  2PEJ A;  4U0F A;  2ROQ A;  2N6Y A;  1VQ9 P;  2KOD A;  2LOL A;  3OW2 O;  1IUQ A;  2GDX A;  1BXI A;  1HQB A;  1YJW P;  1QVF O;  4NEO A;  2N5I A;  1Q86 Q;  1ACP A;  1GXG A;  1X3O A;  1YIJ P;  1K73 Q;  1JJ2 O;  2K5X A;  3CXC O;  3CCR P;  3HZQ A;  3CPW O;  2LF4 A;  4DG9 A;  4UHP B;  1RO0 A;  1YJN P;  3DPH A;  4IPY A;  2OTJ P;  3H4E A;  5HGM A;  3B5I A;  2PEN A;  2LIW A;  3VRL C;  1VQO P;  1YHQ P;  2CNR A;  2QA4 P;  3GKL C;  2PEO A;  3G4S P;  5KP6 B;  1ZMB A;  3H47 A;  4QNB A;  2EFJ A;  3LRY A;  1IMP A;  1EMV A;  3CCE P;  3G71 P;  4M0I A;  4CA3 A;  2DNW A;  4QKO A;  3EJD A;  5EJD A;  1AF8 A;  2N6Z A;  2GZF A;  2ONT A;  2KOR A;  2EG5 A;  1DNY A;  4BPH A;  3MGE A;  3M1M A;  1OR5 A;  2QEX P;  2FVA A;  3RG2 A;  2FHS C;  3I55 P;  2GDY A;  3I56 P;  5CZD B;  1A8O A;  3B4Q A;  2L0Q A;  1Q81 Q;  5JPA A;  4XFY A;  2FVE A;  2XZ1 C;  3NY7 B;  3CCM P;  2GZE A;  2XXM A;  2FQ0 A;  2XZ0 D;  1KC8 Q;  2KOS A;  5KP7 B;  2MD9 A;  1YIT P;  4PXH B;  3CME P;  2GZJ A;  2LL8 A;  1K9M Q;  2JGP A;  3H0D A;  5HVC A;  2K0X A;  1L0I A;  2CQ8 A;  3G1I A;  1VKU A;  5F2N A;  3CCJ P;  4BPG A;  1Q82 Q;  2QNW A;  4MRT C;  2JAZ A;  5BS2 A;  2FAE A;  2OTL P;  1M1K Q;  2AFD A;  1YJ9 P;  2JQ4 A;  3CC2 P;  3WBH A;  3G6E P;  1FR2 A;  1CEI A;  1QRJ A;  3CMA P;  2GZI A;  2GZG A;  3G29 A;  2VSQ A;  2CWO A;  1EOQ A;  2Z44 A;  1M74 A;  4GR6 A;  2KOO A;  1MZ8 A;  3CD6 P;  2VLP A;  2VLN A;  4PH0 A;  1S72 P;  4XFX A;  1IMQ A;  2LKI A;  2MY5 A;  2PY8 A;  2LPK A;  3CCS P;  5HV8 A;  2K93 A;  1NQ4 A;  1HY8 A;  2N98 A;  5F2K A;  2BUO A;  3CCQ P;  1KQS O;  2KG8 A;  2KWL A;  2BHV A;  1VQ7 P;  2FVF A;  2MR7 A;  4PH1 A;  1KLP A;  2K2Q A;  4H2Y C;  2KGD A;  3CC4 P;  1VQM P;  1A43 A;  5KP8 B;  3NTE A;  2KGE A;  2L6E A;  1VQ6 P;  1UJZ A;  1M6N A;  3U43 A;  2JYL A;  1M6E X;  2FQ2 A;  2MVV A;  1ZNV A;  1K30 A;  2AVA A;  1QVG O;  2JB0 A;  2JU1 A;  2KOP A;  1RNI A;  4XRQ A;  5I4T G;  4IZ6 A;  4U0E A;  1GPJ A;  3E2D A;  2PEM A;  1VQ4 P;  1KD1 Q;  2N5H A;  4XRO A;  2L4B A;  2NO8 A;  1W2B O;  2EIA A;  4XFZ A;  2EHS A;  5HGN A;  1AUM A;  2KGC A;  2K94 A;  4R0M A;  3G28 A;  4COC A;  1D1D A;  1Q7Y Q;  1NJI Q;  1UNK A;  1DV5 A;  2MF4 A;  2PEI A;  3CCV P;  2DGY A;  2GDW A;  3LMO A;  2OAR A;  2K0Y A;  2M8L A;  4COP A;  5EW5 E;  2AFE A;  1VQ5 P;  2KG6 A;  1N8R Q;  4H2X C;  3Q20 A;  1VQL P;  4F37 A;  1YI2 P;  7CEI A;  1E0H A;  4WYM A;  3GJN A;  2Z46 A;  3DS4 A;  2LTE A;  3G26 A;  2PEK A;  4U0D A;  3G0V A;  3DS2 A;  1E6J P;  2E1M A;  3DS0 A;  2JYG A;  2XT1 A;  3G21 A;  1VQP P;  1VQK P; 
#chains in the Genus database with same CATH homology
 1EMV A;  1IMP A;  2K0D X;  4F37 A;  1UNK A;  2VLP A;  2VLN A;  7CEI A;  1E0H A;  2ERH A;  1ZNV A;  3GJN A;  4QKO A;  2GZE A;  1BXI A;  2JBG A;  1FR2 A;  1IMQ A;  2NO8 A;  1CEI A;  2VLQ A;  2GZF A;  2JB0 A;  3GKL C;  1GXG A;  2GZI A;  2GZG A;  2K5X A;  2JAZ A;  2WPT A;  1UJZ A;  5EW5 E;  1GXH A;  3U43 A;  2GZJ A;  2VLO A;  4UHP B;  2GYK A;  1MZ8 A;  1AYI A; 
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similar chains in the pdb database (?% sequence similarity)

 
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