The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
29
|
sequence length |
90
|
structure length |
87
|
Chain Sequence |
LNSAPTPRDVVANAPAPVQAAVAGAQEYAAQAGLNTEELAVDALYNAIKVRLAGGIPPQIEAFYQANRTNFNGFYMANRGAIDFIFS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The structure of a conserved protein domain (unknown function) from Corynebacterium diphtheriae.
rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Corynebacterium diphtheriae nctc 13129
|
| molecule keywords |
Uncharacterized protein
|
| total genus |
29
|
| structure length |
87
|
| sequence length |
90
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2007-10-24 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A | conserved protein domain from corynebacterium diphtheriae |
#chains in the Genus database with same CATH superfamily 3B4Q A; #chains in the Genus database with same CATH topology 2K93 A; 2ERH A; 2CQ8 A; 2FVE A; 1QVF O; 1UJZ A; 1T8K A; 3MGE A; 2XZ0 D; 2NO8 A; 2KWL A; 1NJI Q; 1GXH A; 2K0D X; 2OTJ P; 1VQ5 P; 2JB0 A; 2GDW A; 1VQN P; 4U0D A; 4UHP B; 2FAD A; 5HV8 A; 2PEO A; 1E0H A; 2FQ0 A; 1UNK A; 2KG8 A; 1YHQ P; 2KOQ A; 5F2N A; 5JPA A; 1QRJ A; 3GJN A; 3G28 A; 2AFE A; 3CCR P; 2E1M A; 1Q86 Q; 4WYM A; 1QVG O; 3U43 A; 2KG6 A; 3H4E A; 1L0I A; 2PEM A; 3CE7 A; 2KOD A; 2LIU A; 3H47 A; 4M0I A; 1VQ7 P; 5I4T G; 1YIT P; 3G1G A; 1KQS O; 2MF4 A; 1KLP A; 1VHN A; 4QKO A; 3G29 A; 2X2B A; 3RG2 A; 2QNW A; 2LKI A; 4XRQ A; 2ROQ A; 3GZL A; 2KOR A; 3CCV P; 4U0F A; 4F37 A; 3NTE A; 5F2O A; 3I55 P; 5KP8 B; 2JU1 A; 3G21 A; 2KOP A; 2JYG A; 3CCL P; 2LIW A; 2DNW A; 1KC8 Q; 2GZE A; 3M1M A; 4XRO A; 3CPW O; 4HKG A; 1CEI A; 2GZJ A; 3DS5 A; 3Q20 A; 4MRT C; 1Q7Y Q; 2M8N A; 5HGL A; 3RG6 C; 2XXM A; 5CZD B; 4COP A; 4XFY A; 2KGD A; 3G71 P; 2BUO A; 3H0D A; 1IMQ A; 1RO2 A; 2LTE A; 2Z44 A; 1ZMB A; 2DGY A; 1D1D A; 1FR2 A; 3CMA P; 3CD6 P; 2K94 A; 4XFX A; 3OW2 O; 4XFZ A; 1A43 A; 3B5I A; 4U0B A; 1MZ8 A; 3DPH A; 5KP6 B; 4U0C A; 1DNY A; 2VLQ A; 2GYK A; 3CCJ P; 4BPF A; 2L6E A; 2M8L A; 3CCM P; 2FHS C; 2N5H A; 1K9M Q; 2MVU A; 4R0M A; 1VQ4 P; 3DS2 A; 4PH0 A; 2VLP A; 2JO0 A; 3CXC O; 4PWV B; 3CC7 P; 3G6E P; 2JQ4 A; 3DTJ A; 1EIA A; 1K8A Q; 4IZ6 A; 2PEN A; 1BXI A; 5HGM A; 2XV6 A; 2JBG A; 2MD9 A; 1ACP A; 1M6N A; 2FAE A; 5EJD A; 1VQP P; 2KGA A; 1RO0 A; 2WPT A; 4NEO A; 3LRY A; 5DCK A; 4COC A; 1Q81 Q; 1HQB A; 2PEI A; 2PEK A; 3EJE A; 4H2Y C; 3DS1 A; 2MVV A; 2EFJ A; 2OAR A; 2K5X A; 3I56 P; 2AF8 A; 1YJN P; 5EW5 E; 3G26 A; 1F80 D; 1S72 P; 2MR7 A; 2KOS A; 2QEX P; 2LOL A; 2FAC A; 1M6E X; 2MY5 A; 2K92 A; 2VLN A; 2VSQ A; 2XT1 A; 2KW2 A; 2AVA A; 4PH1 A; 1GXG A; 1AUM A; 2PNG A; 1VQL P; 1RNI A; 2PY8 A; 2KOO A; 3G4S P; 3CCU P; 1EOQ A; 2N5I A; 1KD1 Q; 3CCE P; 2L9F A; 1VQ9 P; 1EMV A; 1ZNV A; 2GZF A; 2PEJ A; 1A8O A; 2CG5 B; 3EJB A; 1Z6M A; 3CCS P; 2EHS A; 1OR5 A; 2M8P A; 2P9X A; 2CWO A; 3CC4 P; 2KR5 A; 1X3O A; 3CME P; 3B4Q A; 1W2B O; 1DV5 A; 2FVA A; 3DS0 A; 2K0Y A; 2VLO A; 1Q82 Q; 1N8R Q; 1IUQ A; 1JJ2 O; 3P05 A; 2OTL P; 2Z45 A; 2L22 A; 1VQO P; 5BS1 A; 2K2Q A; 2KGC A; 1YJ9 P; 1AF8 A; 3NY7 B; 2L0Q A; 2CNR A; 2M5R A; 2ONT A; 2GDY A; 3G1I A; 1BAJ A; 2LL8 A; 4GR2 A; 3HZQ A; 1IMP A; 3WBH A; 2JYL A; 2LF4 A; 3GKL C; 3LMO A; 2N6Y A; 2LPK A; 5HGO A; 2K0X A; 2FQ1 A; 2QA4 P; 1GPJ A; 2L4B A; 3E2D A; 1VQ8 P; 4CA3 A; 3VRL C; 2FVF A; 2N50 A; 1M74 A; 5BS2 A; 5F2K A; 2N6Z A; 4IPY A; 5KP7 B; 2GZG A; 3HYB A; 2BHV A; 2Z46 A; 2GDX A; 1YIJ P; 1HY8 A; 4GR6 A; 4QNB A; 1L0H A; 1YJW P; 4BPH A; 2MR8 A; 3EJD A; 2AFD A; 2EIA A; 5HGN A; 3CC2 P; 3DS4 A; 4PXH B; 2EHT A; 1YI2 P; 3DS3 A; 1M90 Q; 1K73 Q; 1VKU A; 1VQK P; 1VQ6 P; 1AYI A; 2LML A; 2KG9 A; 3GZM A; 1K30 A; 2XZ1 C; 2JGP A; 4DG9 A; 2EG5 A; 2CGQ A; 2GZI A; 3CCQ P; 2FQ2 A; 1VQM P; 3G0V A; 1M1K Q; 5HVC A; 7CEI A; 2KGE A; 1E6J P; 2JU2 A; 4U0A A; 2PEQ A; 4H2W C; 2N98 A; 4H2X C; 4U0E A; 2JAZ A; 4BPG A; 1NQ4 A; #chains in the Genus database with same CATH homology 3B4Q A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
