3DS0A

Hiv-1 capsid c-terminal domain mutant (n183a) in complex with an inhibitor of particle assembly (cai)
Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
82
structure length
82
Chain Sequence
PTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKAWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Human immunodeficiency virus 1
publication title Residues in the HIV-1 Capsid Assembly Inhibitor Binding Site Are Essential for Maintaining the Assembly-competent Quaternary Structure of the Capsid Protein.
pubmed doi rcsb
molecule keywords HIV-1 CAPSID PROTEIN
total genus 26
structure length 82
sequence length 82
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2008-07-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3ds0A00
4PH0A 4WYMA 2XXMA 4QNBA 4U0EA 3G21A 2BUOA 1QRJA 5HGNA 1A8OA 2LF4A 3VRLC 2JO0A 5DCKA 1AUMA 4U0FA 4XFXA 2JYLA 2M8PA 2JYGA 4XFYA 1E6JP 4COCA 3DS0A 3DS1A 5HGOA 3NTEA 3P05A 5I4TG 3G26A 4U0DA 1BAJA 4COPA 2XT1A 3G0VA 4U0BA 3DS5A 4XRQA 3LRYA 3G1IA 4U0AA 2KODA 1A43A 3H47A 1EOQA 2L6EA 2M8NA 4IPYA 2M8LA 4PH1A 3DPHA 2EIAA 3G1GA 3G28A 3DS4A 3DTJA 4XROA 4XFZA 1EIAA 5HGLA 1D1DA 4M0IA 4U0CA 2XV6A 5JPAA 2ONTA 5HGMA 3G29A 3DS3A 3MGEA 3DS2A 3H4EA
chains in the Genus database with same CATH superfamily
3GKLC 1M1KQ 3EJEA 2KWLA 1IMPA 2MR7A 4U0BA 3H0DA 3G1IA 1A43A 4BPFA 4PH1A 5HV8A 5HGMA 4H2XC 2LF4A 2K93A 5DCKA 2JYLA 2GDWA 1VQLP 3CD6P 1YJ9P 1VQKP 3WBHA 3G6EP 2OTLP 7CEIA 4GR2A 3CCEP 2K0DX 1EIAA 1NJIQ 2CG5B 4QNBA 1QRJA 2DNWA 1AUMA 2OARA 2FVEA 1GXGA 2LTEA 3CC4P 5HVCA 4CA3A 3I55P 3CCUP 1MZ8A 2GZEA 2N98A 1VQ4P 1M6NA 4QKOA 2JBGA 4U0CA 3GZLA 1VQ6P 2AFEA 2CNRA 1M74A 2XXMA 2KG9A 3CC7P 2MY5A 1YHQP 2LIWA 1ZNVA 1KC8Q 4U0DA 2VSQA 4BPGA 1VKUA 2L6EA 2Z46A 1HY8A 3DS4A 1OR5A 1D1DA 2LIUA 2JU1A 3CMAP 3G21A 2BUOA 2JO0A 4COCA 2GDXA 1VQNP 2MF4A 3B5IA 1KD1Q 2MR8A 2PEIA 2ROQA 1YI2P 1VHNA 2KOQA 2LL8A 1RNIA 2FQ0A 2K0YA 1RO0A 2KOPA 3CCJP 2KGDA 3P05A 2KGEA 5I4TG 2DGYA 2EFJA 3GZMA 2EHSA 2E1MA 3G0VA 1QVGO 1VQ9P 5KP7B 3DTJA 5JPAA 3DS2A 2KR5A 5EJDA 1Z6MA 2Z45A 3G26A 2JGPA 1N8RQ 5BS1A 2K5XA 2XT1A 3DS5A 2QA4P 3LRYA 4DG9A 2M8LA 3HYBA 2X2BA 1K30A 2KG8A 5F2NA 5HGLA 2AF8A 4M0IA 3G29A 4WYMA 4IZ6A 4GR6A 3CCMP 2WPTA 1Q86Q 1K8AQ 2N5HA 2BHVA 4U0AA 4BPHA 4PWVB 2VLQA 1UJZA 3B4QA 5HGNA 4XFXA 1W2BO 3Q20A 2N6ZA 2JU2A 2XZ0D 3DS1A 2XZ1C 3NTEA 1YJWP 4H2WC 2QNWA 2L22A 2VLPA 4XROA 2GZGA 1YITP 4H2YC 3CCLP 1Q7YQ 5EW5E 2KW2A 2FHSC 1AYIA 2GZJA 3NY7B 3CCVP 2FQ1A 1Q81Q 2FQ2A 2AVAA 3G4SP 1ACPA 3GJNA 3CXCO 1AF8A 4NEOA 2PEOA 1M90Q 3CCSP 1K73Q 2LOLA 1VQ5P 1YJNP 1F80D 3G1GA 5CZDB 4XFZA 3CPWO 2MVVA 1S72P 2ONTA 3G71P 2FVFA 1IMQA 2FADA 2K94A 5HGOA 2EHTA 4UHPB 1GXHA 2N5IA 1FR2A 3U43A 1Q82Q 3G28A 2FVAA 3H4EA 2M5RA 2EG5A 2VLOA 3VRLC 2KOOA 1UNKA 2KGAA 2N50A 3EJBA 2QEXP 1E0HA 1NQ4A 3E2DA 1VQ7P 1T8KA 4IPYA 2M8NA 1EMVA 1GPJA 2NO8A 2KGCA 1VQOP 2GZIA 1DV5A 1KLPA 1VQ8P 1DNYA 2PY8A 2LKIA 2PNGA 2ERHA 5F2KA 3CCQP 3CCRP 1CEIA 2KG6A 4PXHB 2L9FA 3RG2A 2L0QA 3HZQA 2CWOA 2KORA 2EIAA 1VQMP 2AFDA 3CC2P 2N6YA 3DS3A 3MGEA 3OW2O 5KP8B 5F2OA 4HKGA 1RO2A 4U0EA 1A8OA 2KOSA 4U0FA 2GZFA 3CE7A 1VQPP 2MD9A 1QVFO 3LMOA 3CMEP 2K92A 2GYKA 3EJDA 4XRQA 1KQSO 1BXIA 2KODA 2LPKA 2CGQA 1YIJP 5KP6B 2JAZA 1M6EX 4R0MA 5BS2A 4XFYA 2K2QA 1L0IA 3RG6C 2GDYA 4COPA 2LMLA 1X3OA 3H47A 1EOQA 1K9MQ 1HQBA 2JQ4A 2CQ8A 2PEJA 3DPHA 2PEMA 2XV6A 3I56P 4PH0A 2L4BA 1IUQA 2M8PA 2JYGA 1E6JP 3DS0A 2FACA 2P9XA 1L0HA 2OTJP 1BAJA 2PEQA 2Z44A 3M1MA 2PEKA 4F37A 2PENA 2MVUA 1JJ2O 2FAEA 4MRTC 2VLNA 1ZMBA 2K0XA 2JB0A
chains in the Genus database with same CATH topology
2PY8A 3CMAP 3G21A 2BUOA 5HGNA 2JO0A 5F2KA 4XFXA 1W2BO 1M1KQ 3Q20A 4COCA 3DS1A 3NTEA 3CCQP 1VQNP 3CCRP 1YJWP 3B5IA 4U0BA 3H0DA 1KD1Q 3G1IA 2PEIA 1A43A 1YI2P 3HZQA 4PH1A 2CWOA 2EIAA 4XROA 1VQMP 1YITP 3CC2P 5HGMA 3CCLP 3DS3A 3MGEA 3OW2O 1Q7YQ 5F2OA 1RO2A 1Q81Q 4U0EA 3CCVP 1A8OA 2LF4A 1RO0A 5DCKA 4U0FA 3G4SP 2JYLA 1VQLP 3CCJP 3P05A 5I4TG 2DGYA 1VQPP 2EFJA 1YJ9P 1QVFO 3CD6P 1VQKP 3WBHA 3G6EP 3CXCO 3CMEP 2PEOA 2E1MA 1M90Q 3G0VA 2OTLP 3CCSP 4XRQA 1QVGO 1K73Q 1KQSO 1VQ9P 2KODA 4GR2A 1VQ5P 1YJNP 3G1GA 3CCEP 3DTJA 4XFZA 1EIAA 3CPWO 1NJIQ 1YIJP 5JPAA 1S72P 2ONTA 3G71P 3DS2A 1M6EX 4QNBA 1QRJA 1AUMA 2OARA 5BS2A 2Z45A 4XFYA 5HGOA 3CC4P 3G26A 3RG6C 4COPA 3I55P 5BS1A 2XT1A 1N8RQ 3CCUP 3DS5A 2QA4P 3LRYA 3H47A 1EOQA 1K9MQ 2M8LA 2PEJA 3HYBA 1Q82Q 3DPHA 3G28A 1VQ4P 1K30A 1M6NA 5F2NA 5HGLA 2PEMA 4M0IA 4U0CA 2XV6A 1VQ6P 3G29A 3H4EA 3I56P 4PH0A 4WYMA 1M74A 2EG5A 2XXMA 1IUQA 3VRLC 3CC7P 1YHQP 2M8PA 2JYGA 1E6JP 3DS0A 4GR6A 3CCMP 2P9XA 1Q86Q 1K8AQ 1KC8Q 4U0DA 2QEXP 1BAJA 2OTJP 2BHVA 2PEQA 2Z44A 3M1MA 2PEKA 3E2DA 4U0AA 1VQ7P 2PENA 4IPYA 2L6EA 2Z46A 2M8NA 1JJ2O 3DS4A 1VQOP 1D1DA 1ZMBA 1VQ8P 1RNIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PH0 A;  4WYM A;  2XXM A;  4QNB A;  4U0E A;  3G21 A;  2BUO A;  1QRJ A;  5HGN A;  1A8O A;  2LF4 A;  3VRL C;  2JO0 A;  5DCK A;  1AUM A;  4U0F A;  4XFX A;  2JYL A;  2M8P A;  2JYG A;  4XFY A;  1E6J P;  4COC A;  3DS0 A;  3DS1 A;  5HGO A;  3NTE A;  3P05 A;  5I4T G;  3G26 A;  4U0D A;  1BAJ A;  4COP A;  2XT1 A;  3G0V A;  4U0B A;  3DS5 A;  4XRQ A;  3LRY A;  3G1I A;  4U0A A;  2KOD A;  1A43 A;  3H47 A;  1EOQ A;  2L6E A;  2M8N A;  4IPY A;  2M8L A;  4PH1 A;  3DPH A;  2EIA A;  3G1G A;  3G28 A;  3DS4 A;  3DTJ A;  4XRO A;  4XFZ A;  1EIA A;  5HGL A;  1D1D A;  4M0I A;  4U0C A;  2XV6 A;  5JPA A;  2ONT A;  5HGM A;  3G29 A;  3DS3 A;  3MGE A;  3DS2 A;  3H4E A; 
#chains in the Genus database with same CATH topology
 3GKL C;  1M1K Q;  3EJE A;  2KWL A;  1IMP A;  2MR7 A;  4U0B A;  3H0D A;  3G1I A;  1A43 A;  4BPF A;  4PH1 A;  5HV8 A;  5HGM A;  4H2X C;  2LF4 A;  2K93 A;  5DCK A;  2JYL A;  2GDW A;  1VQL P;  3CD6 P;  1YJ9 P;  1VQK P;  3WBH A;  3G6E P;  2OTL P;  7CEI A;  4GR2 A;  3CCE P;  2K0D X;  1EIA A;  1NJI Q;  2CG5 B;  4QNB A;  1QRJ A;  2DNW A;  1AUM A;  2OAR A;  2FVE A;  1GXG A;  2LTE A;  3CC4 P;  5HVC A;  4CA3 A;  3I55 P;  3CCU P;  1MZ8 A;  2GZE A;  2N98 A;  1VQ4 P;  1M6N A;  4QKO A;  2JBG A;  4U0C A;  3GZL A;  1VQ6 P;  2AFE A;  2CNR A;  1M74 A;  2XXM A;  2KG9 A;  3CC7 P;  2MY5 A;  1YHQ P;  2LIW A;  1ZNV A;  1KC8 Q;  4U0D A;  2VSQ A;  4BPG A;  1VKU A;  2L6E A;  2Z46 A;  1HY8 A;  3DS4 A;  1OR5 A;  1D1D A;  2LIU A;  2JU1 A;  3CMA P;  3G21 A;  2BUO A;  2JO0 A;  4COC A;  2GDX A;  1VQN P;  2MF4 A;  3B5I A;  1KD1 Q;  2MR8 A;  2PEI A;  2ROQ A;  1YI2 P;  1VHN A;  2KOQ A;  2LL8 A;  1RNI A;  2FQ0 A;  2K0Y A;  1RO0 A;  2KOP A;  3CCJ P;  2KGD A;  3P05 A;  2KGE A;  5I4T G;  2DGY A;  2EFJ A;  3GZM A;  2EHS A;  2E1M A;  3G0V A;  1QVG O;  1VQ9 P;  5KP7 B;  3DTJ A;  5JPA A;  3DS2 A;  2KR5 A;  5EJD A;  1Z6M A;  2Z45 A;  3G26 A;  2JGP A;  1N8R Q;  5BS1 A;  2K5X A;  2XT1 A;  3DS5 A;  2QA4 P;  3LRY A;  4DG9 A;  2M8L A;  3HYB A;  2X2B A;  1K30 A;  2KG8 A;  5F2N A;  5HGL A;  2AF8 A;  4M0I A;  3G29 A;  4WYM A;  4IZ6 A;  4GR6 A;  3CCM P;  2WPT A;  1Q86 Q;  1K8A Q;  2N5H A;  2BHV A;  4U0A A;  4BPH A;  4PWV B;  2VLQ A;  1UJZ A;  3B4Q A;  5HGN A;  4XFX A;  1W2B O;  3Q20 A;  2N6Z A;  2JU2 A;  2XZ0 D;  3DS1 A;  2XZ1 C;  3NTE A;  1YJW P;  4H2W C;  2QNW A;  2L22 A;  2VLP A;  4XRO A;  2GZG A;  1YIT P;  4H2Y C;  3CCL P;  1Q7Y Q;  5EW5 E;  2KW2 A;  2FHS C;  1AYI A;  2GZJ A;  3NY7 B;  3CCV P;  2FQ1 A;  1Q81 Q;  2FQ2 A;  2AVA A;  3G4S P;  1ACP A;  3GJN A;  3CXC O;  1AF8 A;  4NEO A;  2PEO A;  1M90 Q;  3CCS P;  1K73 Q;  2LOL A;  1VQ5 P;  1YJN P;  1F80 D;  3G1G A;  5CZD B;  4XFZ A;  3CPW O;  2MVV A;  1S72 P;  2ONT A;  3G71 P;  2FVF A;  1IMQ A;  2FAD A;  2K94 A;  5HGO A;  2EHT A;  4UHP B;  1GXH A;  2N5I A;  1FR2 A;  3U43 A;  1Q82 Q;  3G28 A;  2FVA A;  3H4E A;  2M5R A;  2EG5 A;  2VLO A;  3VRL C;  2KOO A;  1UNK A;  2KGA A;  2N50 A;  3EJB A;  2QEX P;  1E0H A;  1NQ4 A;  3E2D A;  1VQ7 P;  1T8K A;  4IPY A;  2M8N A;  1EMV A;  1GPJ A;  2NO8 A;  2KGC A;  1VQO P;  2GZI A;  1DV5 A;  1KLP A;  1VQ8 P;  1DNY A;  2PY8 A;  2LKI A;  2PNG A;  2ERH A;  5F2K A;  3CCQ P;  3CCR P;  1CEI A;  2KG6 A;  4PXH B;  2L9F A;  3RG2 A;  2L0Q A;  3HZQ A;  2CWO A;  2KOR A;  2EIA A;  1VQM P;  2AFD A;  3CC2 P;  2N6Y A;  3DS3 A;  3MGE A;  3OW2 O;  5KP8 B;  5F2O A;  4HKG A;  1RO2 A;  4U0E A;  1A8O A;  2KOS A;  4U0F A;  2GZF A;  3CE7 A;  1VQP P;  2MD9 A;  1QVF O;  3LMO A;  3CME P;  2K92 A;  2GYK A;  3EJD A;  4XRQ A;  1KQS O;  1BXI A;  2KOD A;  2LPK A;  2CGQ A;  1YIJ P;  5KP6 B;  2JAZ A;  1M6E X;  4R0M A;  5BS2 A;  4XFY A;  2K2Q A;  1L0I A;  3RG6 C;  2GDY A;  4COP A;  2LML A;  1X3O A;  3H47 A;  1EOQ A;  1K9M Q;  1HQB A;  2JQ4 A;  2CQ8 A;  2PEJ A;  3DPH A;  2PEM A;  2XV6 A;  3I56 P;  4PH0 A;  2L4B A;  1IUQ A;  2M8P A;  2JYG A;  1E6J P;  3DS0 A;  2FAC A;  2P9X A;  1L0H A;  2OTJ P;  1BAJ A;  2PEQ A;  2Z44 A;  3M1M A;  2PEK A;  4F37 A;  2PEN A;  2MVU A;  1JJ2 O;  2FAE A;  4MRT C;  2VLN A;  1ZMB A;  2K0X A;  2JB0 A; 
#chains in the Genus database with same CATH homology
 2PY8 A;  3CMA P;  3G21 A;  2BUO A;  5HGN A;  2JO0 A;  5F2K A;  4XFX A;  1W2B O;  1M1K Q;  3Q20 A;  4COC A;  3DS1 A;  3NTE A;  3CCQ P;  1VQN P;  3CCR P;  1YJW P;  3B5I A;  4U0B A;  3H0D A;  1KD1 Q;  3G1I A;  2PEI A;  1A43 A;  1YI2 P;  3HZQ A;  4PH1 A;  2CWO A;  2EIA A;  4XRO A;  1VQM P;  1YIT P;  3CC2 P;  5HGM A;  3CCL P;  3DS3 A;  3MGE A;  3OW2 O;  1Q7Y Q;  5F2O A;  1RO2 A;  1Q81 Q;  4U0E A;  3CCV P;  1A8O A;  2LF4 A;  1RO0 A;  5DCK A;  4U0F A;  3G4S P;  2JYL A;  1VQL P;  3CCJ P;  3P05 A;  5I4T G;  2DGY A;  1VQP P;  2EFJ A;  1YJ9 P;  1QVF O;  3CD6 P;  1VQK P;  3WBH A;  3G6E P;  3CXC O;  3CME P;  2PEO A;  2E1M A;  1M90 Q;  3G0V A;  2OTL P;  3CCS P;  4XRQ A;  1QVG O;  1K73 Q;  1KQS O;  1VQ9 P;  2KOD A;  4GR2 A;  1VQ5 P;  1YJN P;  3G1G A;  3CCE P;  3DTJ A;  4XFZ A;  1EIA A;  3CPW O;  1NJI Q;  1YIJ P;  5JPA A;  1S72 P;  2ONT A;  3G71 P;  3DS2 A;  1M6E X;  4QNB A;  1QRJ A;  1AUM A;  2OAR A;  5BS2 A;  2Z45 A;  4XFY A;  5HGO A;  3CC4 P;  3G26 A;  3RG6 C;  4COP A;  3I55 P;  5BS1 A;  2XT1 A;  1N8R Q;  3CCU P;  3DS5 A;  2QA4 P;  3LRY A;  3H47 A;  1EOQ A;  1K9M Q;  2M8L A;  2PEJ A;  3HYB A;  1Q82 Q;  3DPH A;  3G28 A;  1VQ4 P;  1K30 A;  1M6N A;  5F2N A;  5HGL A;  2PEM A;  4M0I A;  4U0C A;  2XV6 A;  1VQ6 P;  3G29 A;  3H4E A;  3I56 P;  4PH0 A;  4WYM A;  1M74 A;  2EG5 A;  2XXM A;  1IUQ A;  3VRL C;  3CC7 P;  1YHQ P;  2M8P A;  2JYG A;  1E6J P;  3DS0 A;  4GR6 A;  3CCM P;  2P9X A;  1Q86 Q;  1K8A Q;  1KC8 Q;  4U0D A;  2QEX P;  1BAJ A;  2OTJ P;  2BHV A;  2PEQ A;  2Z44 A;  3M1M A;  2PEK A;  3E2D A;  4U0A A;  1VQ7 P;  2PEN A;  4IPY A;  2L6E A;  2Z46 A;  2M8N A;  1JJ2 O;  3DS4 A;  1VQO P;  1D1D A;  1ZMB A;  1VQ8 P;  1RNI A; 
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