3DS1A

Hiv-1 capsid c-terminal domain mutant (e187a) in complex with an inhibitor of particle assembly (cai)
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
81
structure length
81
Chain Sequence
TSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTATLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Human immunodeficiency virus 1
publication title Residues in the HIV-1 Capsid Assembly Inhibitor Binding Site Are Essential for Maintaining the Assembly-competent Quaternary Structure of the Capsid Protein.
pubmed doi rcsb
molecule keywords HIV-1 CAPSID PROTEIN
total genus 29
structure length 81
sequence length 81
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2008-07-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3ds1A00
3G1GA 4M0IA 5HGMA 5JPAA 4COPA 2EIAA 3G1IA 1A43A 3DS2A 4U0AA 4XRQA 3DS0A 3H47A 3P05A 5HGLA 5HGOA 4XFXA 2L6EA 3G0VA 1AUMA 4WYMA 4PH1A 1QRJA 3DS3A 4XROA 1EOQA 4U0DA 2XV6A 2JYLA 4IPYA 4XFZA 4COCA 2JO0A 3H4EA 3MGEA 4U0EA 2XXMA 5HGNA 2JYGA 4U0FA 1BAJA 4PH0A 3G21A 4QNBA 3G28A 1D1DA 2ONTA 5I4TG 1EIAA 4XFYA 1E6JP 2KODA 5DCKA 3G29A 3VRLC 2XT1A 3G26A 2BUOA 3DS1A 2M8NA 3DPHA 3DS5A 3DS4A 3DTJA 1A8OA 2M8PA 2M8LA 3NTEA 2LF4A 3LRYA 4U0CA 4U0BA
chains in the Genus database with same CATH superfamily
1L0IA 2DNWA 1A43A 2CWOA 2JB0A 2FAEA 3G6EP 2XZ0D 4WYMA 5KP7B 5KP6B 1QVGO 2MR7A 2X2BA 2K0YA 3DS1A 2JBGA 4UHPB 2Z44A 1VQKP 1GXHA 1AF8A 1VHNA 3P05A 2L6EA 2MF4A 3DS3A 4XFZA 4DG9A 1BAJA 3G28A 3CMEP 2FVEA 2PEJA 3NTEA 1UNKA 3LRYA 2M5RA 2AFDA 1M6NA 2KG8A 1AYIA 2GZIA 2AF8A 2L9FA 2CNRA 2KG6A 2ERHA 2N5HA 1E0HA 4BPHA 5EW5E 2EFJA 2LTEA 2JGPA 2L0QA 2FVFA 3M1MA 2K92A 2LIUA 4H2YC 3OW2O 1Q81Q 4U0AA 3DS2A 4CA3A 3HZQA 1M90Q 2GDYA 4R0MA 2CQ8A 2VSQA 3NY7B 1YIJP 2JYGA 2EHTA 4GR2A 4QKOA 1Z6MA 2LOLA 2MVUA 3I55P 1T8KA 2GZEA 4IZ6A 4U0BA 1IMQA 3I56P 2KORA 2PY8A 1IUQA 1YJWP 4XFXA 2N50A 3GJNA 3CCUP 2XXMA 1D1DA 2AVAA 3CD6P 4H2XC 1M1KQ 2M8NA 1A8OA 2KGAA 3EJDA 3CC4P 2LF4A 5HV8A 2PEMA 1YI2P 5JPAA 2N6YA 2EHSA 1Q86Q 2KOQA 3CCJP 2VLOA 1RNIA 1JJ2O 4MRTC 2LL8A 4PH0A 1L0HA 3G29A 5KP8B 5BS2A 3HYBA 2MD9A 1VQ5P 1K73Q 2DGYA 2KOSA 3CCQP 3CCVP 5HGOA 3CPWO 2Z46A 1K30A 3B5IA 3GZMA 1QRJA 4COCA 3G26A 2LMLA 1X3OA 1KD1Q 2BHVA 1GXGA 3G1GA 2KOPA 7CEIA 1YJ9P 2NO8A 2ROQA 2KOOA 3CCEP 4PH1A 1VQ8P 2XV6A 3H4EA 3CXCO 4H2WC 3U43A 2CG5B 3RG6C 3G4SP 1MZ8A 5F2KA 2WPTA 2FADA 4U0CA 5HGMA 5HVCA 2LIWA 2XZ1C 1HY8A 2N98A 4XROA 2GDWA 3CMAP 2KGDA 2LPKA 1EIAA 3VRLC 2M8LA 2KW2A 1S72P 2KG9A 5F2NA 4M0IA 2MY5A 4BPGA 5CZDB 2QA4P 1DNYA 2EG5A 3CCLP 3B4QA 1BXIA 1GPJA 1W2BO 3EJEA 2PNGA 2K2QA 4U0FA 3CCRP 2FVAA 2KODA 3CCMP 3CE7A 2VLPA 3H0DA 1IMPA 4HKGA 2K5XA 2PEQA 4COPA 2L22A 1VQ7P 4XRQA 3RG2A 2CGQA 1CEIA 1RO2A 3GKLC 2K0DX 2JO0A 2JU2A 2K94A 4QNBA 1FR2A 3E2DA 2QNWA 3DS5A 3DTJA 1Q7YQ 3CC7P 1EMVA 3GZLA 1HQBA 2GDXA 2GZGA 1ZMBA 5BS1A 1AUMA 3LMOA 2KWLA 3WBHA 4U0DA 2FQ2A 2FQ0A 1VQ9P 2JYLA 1KLPA 4U0EA 1K9MQ 1E6JP 3DS4A 4PWVB 3DS0A 3H47A 1K8AQ 3CCSP 2PEIA 1YJNP 2GYKA 1EOQA 2KR5A 1VKUA 1M74A 3G21A 1VQNP 4PXHB 2OTJP 2P9XA 1YITP 2VLNA 4BPFA 1KQSO 2L4BA 1F80D 1UJZA 1OR5A 3G1IA 1VQMP 2MVVA 3EJBA 2VLQA 2JQ4A 2QEXP 4NEOA 3MGEA 5HGNA 1RO0A 4F37A 2JU1A 2MR8A 2GZJA 2ONTA 2PENA 5I4TG 2GZFA 2JAZA 2KGEA 1QVFO 2E1MA 2KGCA 2AFEA 5HGLA 4GR6A 1N8RQ 1VQOP 1YHQP 1NQ4A 2FACA 4IPYA 2N6ZA 1Q82Q 1VQ4P 2FHSC 2K0XA 5F2OA 2BUOA 2OARA 1VQ6P 2PEOA 3CC2P 1M6EX 2PEKA 2FQ1A 1ACPA 2EIAA 2OTLP 1ZNVA 3G0VA 2Z45A 1KC8Q 2K93A 1VQPP 2LKIA 2N5IA 5EJDA 3G71P 1DV5A 1VQLP 4XFYA 5DCKA 2XT1A 3DPHA 2M8PA 1NJIQ 3Q20A
chains in the Genus database with same CATH topology
5HGMA 3I56P 2PY8A 1A43A 2CWOA 1IUQA 3DS0A 3H47A 1YJWP 1K8AQ 3CCSP 2PEIA 4XFXA 3G6EP 4WYMA 1YJNP 4XROA 1EOQA 3CCUP 3CMAP 1M74A 2XXMA 1D1DA 1QVGO 3G21A 3CD6P 1VQNP 1EIAA 3VRLC 1M1KQ 3DS1A 2OTJP 2M8NA 2P9XA 1A8OA 2M8LA 2Z44A 1S72P 1VQKP 3CC4P 1YITP 2LF4A 2PEMA 5F2NA 1YI2P 5JPAA 4M0IA 1KQSO 1Q86Q 2QA4P 3CCJP 3G1IA 2EG5A 1VQMP 3P05A 3CCLP 2L6EA 1RNIA 3DS3A 1JJ2O 1W2BO 2QEXP 4XFZA 3MGEA 5HGNA 4U0FA 1RO0A 1BAJA 4PH0A 3CCRP 3G28A 2ONTA 5I4TG 2PENA 2KODA 3CMEP 3G29A 3CCMP 5BS2A 2PEJA 3HYBA 3H0DA 3NTEA 3LRYA 1VQ5P 1QVFO 2PEQA 1M6NA 2E1MA 1K73Q 2DGYA 4COPA 1VQ7P 3CCQP 4XRQA 3CCVP 5HGLA 5HGOA 4GR6A 3CPWO 1N8RQ 2Z46A 1K30A 3B5IA 1VQOP 1RO2A 1QRJA 1YHQP 4IPYA 4COCA 2JO0A 1Q82Q 4QNBA 1VQ4P 5F2OA 3E2DA 2EFJA 3G26A 2BUOA 3DS5A 2OARA 3DTJA 1VQ6P 1KD1Q 2PEOA 3M1MA 2BHVA 3CC2P 1M6EX 1Q7YQ 3CC7P 3G1GA 2PEKA 1YJ9P 2EIAA 3OW2O 1Q81Q 4U0AA 3DS2A 2OTLP 3CCEP 1ZMBA 3G0VA 3HZQA 5BS1A 1AUMA 2Z45A 4PH1A 1VQ8P 3WBHA 4U0DA 1KC8Q 1M90Q 2XV6A 1VQ9P 2JYLA 3H4EA 1VQPP 3CXCO 4U0EA 1YIJP 2JYGA 3G71P 4GR2A 1VQLP 1K9MQ 4XFYA 1E6JP 5DCKA 3RG6C 3G4SP 2XT1A 3DPHA 3DS4A 2M8PA 1NJIQ 5F2KA 3I55P 3Q20A 4U0CA 4U0BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G1G A;  4M0I A;  5HGM A;  5JPA A;  4COP A;  2EIA A;  3G1I A;  1A43 A;  3DS2 A;  4U0A A;  4XRQ A;  3DS0 A;  3H47 A;  3P05 A;  5HGL A;  5HGO A;  4XFX A;  2L6E A;  3G0V A;  1AUM A;  4WYM A;  4PH1 A;  1QRJ A;  3DS3 A;  4XRO A;  1EOQ A;  4U0D A;  2XV6 A;  2JYL A;  4IPY A;  4XFZ A;  4COC A;  2JO0 A;  3H4E A;  3MGE A;  4U0E A;  2XXM A;  5HGN A;  2JYG A;  4U0F A;  1BAJ A;  4PH0 A;  3G21 A;  4QNB A;  3G28 A;  1D1D A;  2ONT A;  5I4T G;  1EIA A;  4XFY A;  1E6J P;  2KOD A;  5DCK A;  3G29 A;  3VRL C;  2XT1 A;  3G26 A;  2BUO A;  3DS1 A;  2M8N A;  3DPH A;  3DS5 A;  3DS4 A;  3DTJ A;  1A8O A;  2M8P A;  2M8L A;  3NTE A;  2LF4 A;  3LRY A;  4U0C A;  4U0B A; 
#chains in the Genus database with same CATH topology
 1L0I A;  2DNW A;  1A43 A;  2CWO A;  2JB0 A;  2FAE A;  3G6E P;  2XZ0 D;  4WYM A;  5KP7 B;  5KP6 B;  1QVG O;  2MR7 A;  2X2B A;  2K0Y A;  3DS1 A;  2JBG A;  4UHP B;  2Z44 A;  1VQK P;  1GXH A;  1AF8 A;  1VHN A;  3P05 A;  2L6E A;  2MF4 A;  3DS3 A;  4XFZ A;  4DG9 A;  1BAJ A;  3G28 A;  3CME P;  2FVE A;  2PEJ A;  3NTE A;  1UNK A;  3LRY A;  2M5R A;  2AFD A;  1M6N A;  2KG8 A;  1AYI A;  2GZI A;  2AF8 A;  2L9F A;  2CNR A;  2KG6 A;  2ERH A;  2N5H A;  1E0H A;  4BPH A;  5EW5 E;  2EFJ A;  2LTE A;  2JGP A;  2L0Q A;  2FVF A;  3M1M A;  2K92 A;  2LIU A;  4H2Y C;  3OW2 O;  1Q81 Q;  4U0A A;  3DS2 A;  4CA3 A;  3HZQ A;  1M90 Q;  2GDY A;  4R0M A;  2CQ8 A;  2VSQ A;  3NY7 B;  1YIJ P;  2JYG A;  2EHT A;  4GR2 A;  4QKO A;  1Z6M A;  2LOL A;  2MVU A;  3I55 P;  1T8K A;  2GZE A;  4IZ6 A;  4U0B A;  1IMQ A;  3I56 P;  2KOR A;  2PY8 A;  1IUQ A;  1YJW P;  4XFX A;  2N50 A;  3GJN A;  3CCU P;  2XXM A;  1D1D A;  2AVA A;  3CD6 P;  4H2X C;  1M1K Q;  2M8N A;  1A8O A;  2KGA A;  3EJD A;  3CC4 P;  2LF4 A;  5HV8 A;  2PEM A;  1YI2 P;  5JPA A;  2N6Y A;  2EHS A;  1Q86 Q;  2KOQ A;  3CCJ P;  2VLO A;  1RNI A;  1JJ2 O;  4MRT C;  2LL8 A;  4PH0 A;  1L0H A;  3G29 A;  5KP8 B;  5BS2 A;  3HYB A;  2MD9 A;  1VQ5 P;  1K73 Q;  2DGY A;  2KOS A;  3CCQ P;  3CCV P;  5HGO A;  3CPW O;  2Z46 A;  1K30 A;  3B5I A;  3GZM A;  1QRJ A;  4COC A;  3G26 A;  2LML A;  1X3O A;  1KD1 Q;  2BHV A;  1GXG A;  3G1G A;  2KOP A;  7CEI A;  1YJ9 P;  2NO8 A;  2ROQ A;  2KOO A;  3CCE P;  4PH1 A;  1VQ8 P;  2XV6 A;  3H4E A;  3CXC O;  4H2W C;  3U43 A;  2CG5 B;  3RG6 C;  3G4S P;  1MZ8 A;  5F2K A;  2WPT A;  2FAD A;  4U0C A;  5HGM A;  5HVC A;  2LIW A;  2XZ1 C;  1HY8 A;  2N98 A;  4XRO A;  2GDW A;  3CMA P;  2KGD A;  2LPK A;  1EIA A;  3VRL C;  2M8L A;  2KW2 A;  1S72 P;  2KG9 A;  5F2N A;  4M0I A;  2MY5 A;  4BPG A;  5CZD B;  2QA4 P;  1DNY A;  2EG5 A;  3CCL P;  3B4Q A;  1BXI A;  1GPJ A;  1W2B O;  3EJE A;  2PNG A;  2K2Q A;  4U0F A;  3CCR P;  2FVA A;  2KOD A;  3CCM P;  3CE7 A;  2VLP A;  3H0D A;  1IMP A;  4HKG A;  2K5X A;  2PEQ A;  4COP A;  2L22 A;  1VQ7 P;  4XRQ A;  3RG2 A;  2CGQ A;  1CEI A;  1RO2 A;  3GKL C;  2K0D X;  2JO0 A;  2JU2 A;  2K94 A;  4QNB A;  1FR2 A;  3E2D A;  2QNW A;  3DS5 A;  3DTJ A;  1Q7Y Q;  3CC7 P;  1EMV A;  3GZL A;  1HQB A;  2GDX A;  2GZG A;  1ZMB A;  5BS1 A;  1AUM A;  3LMO A;  2KWL A;  3WBH A;  4U0D A;  2FQ2 A;  2FQ0 A;  1VQ9 P;  2JYL A;  1KLP A;  4U0E A;  1K9M Q;  1E6J P;  3DS4 A;  4PWV B;  3DS0 A;  3H47 A;  1K8A Q;  3CCS P;  2PEI A;  1YJN P;  2GYK A;  1EOQ A;  2KR5 A;  1VKU A;  1M74 A;  3G21 A;  1VQN P;  4PXH B;  2OTJ P;  2P9X A;  1YIT P;  2VLN A;  4BPF A;  1KQS O;  2L4B A;  1F80 D;  1UJZ A;  1OR5 A;  3G1I A;  1VQM P;  2MVV A;  3EJB A;  2VLQ A;  2JQ4 A;  2QEX P;  4NEO A;  3MGE A;  5HGN A;  1RO0 A;  4F37 A;  2JU1 A;  2MR8 A;  2GZJ A;  2ONT A;  2PEN A;  5I4T G;  2GZF A;  2JAZ A;  2KGE A;  1QVF O;  2E1M A;  2KGC A;  2AFE A;  5HGL A;  4GR6 A;  1N8R Q;  1VQO P;  1YHQ P;  1NQ4 A;  2FAC A;  4IPY A;  2N6Z A;  1Q82 Q;  1VQ4 P;  2FHS C;  2K0X A;  5F2O A;  2BUO A;  2OAR A;  1VQ6 P;  2PEO A;  3CC2 P;  1M6E X;  2PEK A;  2FQ1 A;  1ACP A;  2EIA A;  2OTL P;  1ZNV A;  3G0V A;  2Z45 A;  1KC8 Q;  2K93 A;  1VQP P;  2LKI A;  2N5I A;  5EJD A;  3G71 P;  1DV5 A;  1VQL P;  4XFY A;  5DCK A;  2XT1 A;  3DPH A;  2M8P A;  1NJI Q;  3Q20 A; 
#chains in the Genus database with same CATH homology
 5HGM A;  3I56 P;  2PY8 A;  1A43 A;  2CWO A;  1IUQ A;  3DS0 A;  3H47 A;  1YJW P;  1K8A Q;  3CCS P;  2PEI A;  4XFX A;  3G6E P;  4WYM A;  1YJN P;  4XRO A;  1EOQ A;  3CCU P;  3CMA P;  1M74 A;  2XXM A;  1D1D A;  1QVG O;  3G21 A;  3CD6 P;  1VQN P;  1EIA A;  3VRL C;  1M1K Q;  3DS1 A;  2OTJ P;  2M8N A;  2P9X A;  1A8O A;  2M8L A;  2Z44 A;  1S72 P;  1VQK P;  3CC4 P;  1YIT P;  2LF4 A;  2PEM A;  5F2N A;  1YI2 P;  5JPA A;  4M0I A;  1KQS O;  1Q86 Q;  2QA4 P;  3CCJ P;  3G1I A;  2EG5 A;  1VQM P;  3P05 A;  3CCL P;  2L6E A;  1RNI A;  3DS3 A;  1JJ2 O;  1W2B O;  2QEX P;  4XFZ A;  3MGE A;  5HGN A;  4U0F A;  1RO0 A;  1BAJ A;  4PH0 A;  3CCR P;  3G28 A;  2ONT A;  5I4T G;  2PEN A;  2KOD A;  3CME P;  3G29 A;  3CCM P;  5BS2 A;  2PEJ A;  3HYB A;  3H0D A;  3NTE A;  3LRY A;  1VQ5 P;  1QVF O;  2PEQ A;  1M6N A;  2E1M A;  1K73 Q;  2DGY A;  4COP A;  1VQ7 P;  3CCQ P;  4XRQ A;  3CCV P;  5HGL A;  5HGO A;  4GR6 A;  3CPW O;  1N8R Q;  2Z46 A;  1K30 A;  3B5I A;  1VQO P;  1RO2 A;  1QRJ A;  1YHQ P;  4IPY A;  4COC A;  2JO0 A;  1Q82 Q;  4QNB A;  1VQ4 P;  5F2O A;  3E2D A;  2EFJ A;  3G26 A;  2BUO A;  3DS5 A;  2OAR A;  3DTJ A;  1VQ6 P;  1KD1 Q;  2PEO A;  3M1M A;  2BHV A;  3CC2 P;  1M6E X;  1Q7Y Q;  3CC7 P;  3G1G A;  2PEK A;  1YJ9 P;  2EIA A;  3OW2 O;  1Q81 Q;  4U0A A;  3DS2 A;  2OTL P;  3CCE P;  1ZMB A;  3G0V A;  3HZQ A;  5BS1 A;  1AUM A;  2Z45 A;  4PH1 A;  1VQ8 P;  3WBH A;  4U0D A;  1KC8 Q;  1M90 Q;  2XV6 A;  1VQ9 P;  2JYL A;  3H4E A;  1VQP P;  3CXC O;  4U0E A;  1YIJ P;  2JYG A;  3G71 P;  4GR2 A;  1VQL P;  1K9M Q;  4XFY A;  1E6J P;  5DCK A;  3RG6 C;  3G4S P;  2XT1 A;  3DPH A;  3DS4 A;  2M8P A;  1NJI Q;  5F2K A;  3I55 P;  3Q20 A;  4U0C A;  4U0B A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.