3DS3A

Hiv-1 capsid c-terminal domain mutant (y169a) in complex with an inhibitor of particle assembly (cai)
Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
73
structure length
73
Chain Sequence
TSILDIRQGPKEPFRDYVDRFAKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Human immunodeficiency virus 1
publication title Residues in the HIV-1 Capsid Assembly Inhibitor Binding Site Are Essential for Maintaining the Assembly-competent Quaternary Structure of the Capsid Protein.
pubmed doi rcsb
molecule keywords HIV-1 CAPSID PROTEIN
total genus 26
structure length 73
sequence length 73
chains with identical sequence B
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2008-07-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3ds3A00
2EIAA 2JYGA 3G0VA 2XT1A 3DS0A 3NTEA 5DCKA 5HGOA 4U0EA 4XROA 4U0CA 3G1GA 4PH0A 5JPAA 1EIAA 1A43A 4XFXA 2XXMA 3DTJA 3DS3A 3DS4A 3MGEA 4WYMA 1BAJA 2L6EA 4COCA 4U0DA 4U0BA 3DS2A 4XFZA 3G26A 4U0FA 3G29A 4COPA 5I4TG 3DS1A 5HGLA 3G28A 4IPYA 2JYLA 3G1IA 1AUMA 3H4EA 4XFYA 2M8LA 2KODA 5HGMA 3VRLC 1EOQA 4M0IA 4PH1A 1QRJA 2LF4A 5HGNA 3P05A 1E6JP 3LRYA 4QNBA 2ONTA 1D1DA 4U0AA 1A8OA 3G21A 3H47A 2M8NA 3DPHA 4XRQA 2BUOA 3DS5A 2XV6A 2JO0A 2M8PA
chains in the Genus database with same CATH superfamily
2JYGA 2KW2A 2N6ZA 4PH0A 2DNWA 2KORA 2GZGA 1OR5A 1YJNP 3HYBA 1S72P 3GZMA 2M8LA 4XFYA 4M0IA 3GZLA 7CEIA 2LL8A 1VKUA 2VLNA 1VQ8P 1QVGO 2ERHA 1HQBA 2Z45A 2JO0A 2PENA 1VQMP 2K94A 1ZMBA 2L0QA 2KOSA 4U0FA 5BS2A 3H4EA 1YI2P 2QNWA 1RO0A 5EW5E 2MVVA 4HKGA 3CC7P 2QA4P 2JB0A 3GKLC 2KG9A 1VQ5P 1VQOP 4QNBA 2KGEA 2N5IA 2N50A 2XV6A 3CE7A 1DV5A 2OTJP 3G1GA 1MZ8A 3DTJA 1DNYA 1AUMA 5KP7B 3CCMP 2L4BA 2AFEA 2FQ0A 2N98A 2PEQA 1K73Q 2FVEA 2GZEA 3CXCO 1M6NA 2FQ1A 2KGAA 1BXIA 2L6EA 2NO8A 1HY8A 3B5IA 4COPA 3DS1A 2EG5A 1VQKP 3CCJP 2KR5A 2CG5B 4PH1A 2DGYA 3EJBA 2M5RA 1EMVA 3I55P 2ROQA 3B4QA 3RG6C 2K93A 2MR7A 1M1KQ 4U0BA 3CCUP 2JYLA 3CC4P 1M90Q 2KG8A 1RO2A 2JAZA 3LRYA 4NEOA 2KGDA 1IMQA 2L22A 2EHSA 1YIJP 1YJ9P 3G0VA 5HVCA 1Q82Q 2XZ0D 2JU2A 2FVFA 2K92A 3G1IA 2WPTA 2K0YA 1EOQA 5F2KA 3WBHA 2EFJA 3G21A 2P9XA 4BPHA 2M8PA 1M74A 4U0CA 3CC2P 3GJNA 2MVUA 2CGQA 2FQ2A 4XROA 1VQ4P 1A43A 1AF8A 3DS3A 4XFZA 4GR2A 1NJIQ 3CCQP 4QKOA 5KP8B 2CQ8A 1FR2A 2Z44A 1E0HA 2PEOA 3HZQA 1A8OA 1VQLP 4MRTC 1VQPP 2JGPA 2OARA 3EJDA 2OTLP 2N6YA 5HGLA 4BPGA 1E6JP 4DG9A 1YHQP 4BPFA 3DPHA 3CCLP 3DS0A 3EJEA 5HV8A 1CEIA 3CCRP 1K30A 1KQSO 2PEIA 1RNIA 4IPYA 2GDXA 2KOPA 1L0IA 2MF4A 2LTEA 3RG2A 1N8RQ 3G71P 2PY8A 1W2BO 1Q86Q 2Z46A 5HGOA 2AF8A 5JPAA 2FHSC 2PEJA 3DS4A 1IMPA 4PWVB 1L0HA 3G29A 3G28A 2JU1A 1ZNVA 2PEKA 2GZJA 2K5XA 2AFDA 2GYKA 1UNKA 2ONTA 2E1MA 3CMAP 2LIWA 4R0MA 4U0AA 3DS5A 2MD9A 5BS1A 3OW2O 1BAJA 4UHPB 2MR8A 4U0DA 5I4TG 1M6EX 1UJZA 2KODA 5HGMA 1GXHA 2X2BA 1Z6MA 3Q20A 5EJDA 1JJ2O 3NY7B 4H2XC 1F80D 4GR6A 2K0DX 2LOLA 1T8KA 3NTEA 4U0EA 1GPJA 1EIAA 2N5HA 3DS2A 3G26A 1VQ7P 3CCEP 2EHTA 5CZDB 2BHVA 1QRJA 2LF4A 1K8AQ 4H2YC 2JQ4A 2KOOA 3U43A 2BUOA 2VSQA 1VHNA 1Q81Q 2JBGA 4H2WC 2CNRA 2XT1A 5F2OA 2PEMA 2XXMA 4WYMA 3MGEA 2LIUA 1VQNP 1KC8Q 2CWOA 4F37A 2KOQA 3G4SP 2GZFA 5HGNA 3E2DA 2MY5A 2GDWA 5KP6B 2LPKA 2VLPA 2AVAA 2XZ1C 4CA3A 1ACPA 2KWLA 3G6EP 1X3OA 4IZ6A 4XFXA 3H0DA 3CPWO 2GZIA 2VLOA 3VRLC 2K0XA 5F2NA 3P05A 2LKIA 1QVFO 2GDYA 2M8NA 1Q7YQ 2VLQA 3M1MA 2EIAA 5DCKA 2KG6A 1AYIA 2FADA 1YITP 2PNGA 1KD1Q 1VQ6P 2FACA 4PXHB 4COCA 2FAEA 1VQ9P 3LMOA 3CD6P 1D1DA 1YJWP 3CCVP 2LMLA 2L9FA 1GXGA 3CCSP 3I56P 2QEXP 1K9MQ 1NQ4A 1KLPA 1IUQA 2FVAA 3H47A 2KGCA 4XRQA 3CMEP 2K2QA
chains in the Genus database with same CATH topology
3I55P 2JYGA 2BUOA 2XT1A 3DS0A 3RG6C 5F2OA 2PEMA 4PH0A 2XXMA 4WYMA 3MGEA 3CCRP 1K30A 1KQSO 1YJNP 3HYBA 1M1KQ 4U0BA 2PEIA 3CCUP 1VQNP 1S72P 1RNIA 4IPYA 2JYLA 2M8LA 4XFYA 1KC8Q 2CWOA 3CC4P 4M0IA 3G4SP 1M90Q 1RO2A 5HGNA 3LRYA 3E2DA 1N8RQ 3G71P 3CMEP 2PY8A 1VQ8P 1QVGO 2Z45A 2JO0A 1YIJP 1YJ9P 1W2BO 1Q86Q 3G0VA 2PENA 2Z46A 1VQMP 5HGOA 1ZMBA 1Q82Q 3G6EP 5JPAA 2PEJA 4XFXA 3H0DA 3DS4A 3CPWO 4U0FA 5BS2A 3G29A 3G28A 3G1IA 3H4EA 2PEKA 1YI2P 1RO0A 3VRLC 1EOQA 5F2KA 3WBHA 3CC7P 5F2NA 3P05A 2QA4P 2EFJA 1QVFO 1VQ5P 1VQOP 2ONTA 2E1MA 3G21A 3CMAP 2M8NA 1Q7YQ 2P9XA 4U0AA 3DS5A 2XV6A 3M1MA 1M74A 2M8PA 4QNBA 4U0CA 2EIAA 3CC2P 5DCKA 4XROA 2OTJP 5BS1A 3G1GA 1VQ4P 3OW2O 1YITP 1A43A 3DTJA 1KD1Q 3DS3A 1VQ6P 1BAJA 4COCA 4U0DA 4XFZA 4GR2A 5I4TG 1NJIQ 3CCQP 1AUMA 1M6EX 2KODA 5HGMA 1VQ9P 2Z44A 3Q20A 3CCMP 1JJ2O 2PEOA 3HZQA 3CD6P 1D1DA 1A8OA 1YJWP 4GR6A 1VQLP 2PEQA 1K73Q 1VQPP 3CCVP 2OARA 3NTEA 3CCLP 3CXCO 4U0EA 1M6NA 1EIAA 3CCSP 3I56P 2L6EA 2OTLP 3DS2A 3G26A 3B5IA 1VQ7P 4COPA 2QEXP 1K9MQ 3DS1A 5HGLA 2EG5A 1VQKP 3CCJP 3CCEP 4PH1A 2BHVA 1QRJA 2LF4A 2DGYA 1K8AQ 1E6JP 1IUQA 1YHQP 3H47A 4XRQA 3DPHA 1Q81Q
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EIA A;  2JYG A;  3G0V A;  2XT1 A;  3DS0 A;  3NTE A;  5DCK A;  5HGO A;  4U0E A;  4XRO A;  4U0C A;  3G1G A;  4PH0 A;  5JPA A;  1EIA A;  1A43 A;  4XFX A;  2XXM A;  3DTJ A;  3DS3 A;  3DS4 A;  3MGE A;  4WYM A;  1BAJ A;  2L6E A;  4COC A;  4U0D A;  4U0B A;  3DS2 A;  4XFZ A;  3G26 A;  4U0F A;  3G29 A;  4COP A;  5I4T G;  3DS1 A;  5HGL A;  3G28 A;  4IPY A;  2JYL A;  3G1I A;  1AUM A;  3H4E A;  4XFY A;  2M8L A;  2KOD A;  5HGM A;  3VRL C;  1EOQ A;  4M0I A;  4PH1 A;  1QRJ A;  2LF4 A;  5HGN A;  3P05 A;  1E6J P;  3LRY A;  4QNB A;  2ONT A;  1D1D A;  4U0A A;  1A8O A;  3G21 A;  3H47 A;  2M8N A;  3DPH A;  4XRQ A;  2BUO A;  3DS5 A;  2XV6 A;  2JO0 A;  2M8P A; 
#chains in the Genus database with same CATH topology
 2JYG A;  2KW2 A;  2N6Z A;  4PH0 A;  2DNW A;  2KOR A;  2GZG A;  1OR5 A;  1YJN P;  3HYB A;  1S72 P;  3GZM A;  2M8L A;  4XFY A;  4M0I A;  3GZL A;  7CEI A;  2LL8 A;  1VKU A;  2VLN A;  1VQ8 P;  1QVG O;  2ERH A;  1HQB A;  2Z45 A;  2JO0 A;  2PEN A;  1VQM P;  2K94 A;  1ZMB A;  2L0Q A;  2KOS A;  4U0F A;  5BS2 A;  3H4E A;  1YI2 P;  2QNW A;  1RO0 A;  5EW5 E;  2MVV A;  4HKG A;  3CC7 P;  2QA4 P;  2JB0 A;  3GKL C;  2KG9 A;  1VQ5 P;  1VQO P;  4QNB A;  2KGE A;  2N5I A;  2N50 A;  2XV6 A;  3CE7 A;  1DV5 A;  2OTJ P;  3G1G A;  1MZ8 A;  3DTJ A;  1DNY A;  1AUM A;  5KP7 B;  3CCM P;  2L4B A;  2AFE A;  2FQ0 A;  2N98 A;  2PEQ A;  1K73 Q;  2FVE A;  2GZE A;  3CXC O;  1M6N A;  2FQ1 A;  2KGA A;  1BXI A;  2L6E A;  2NO8 A;  1HY8 A;  3B5I A;  4COP A;  3DS1 A;  2EG5 A;  1VQK P;  3CCJ P;  2KR5 A;  2CG5 B;  4PH1 A;  2DGY A;  3EJB A;  2M5R A;  1EMV A;  3I55 P;  2ROQ A;  3B4Q A;  3RG6 C;  2K93 A;  2MR7 A;  1M1K Q;  4U0B A;  3CCU P;  2JYL A;  3CC4 P;  1M90 Q;  2KG8 A;  1RO2 A;  2JAZ A;  3LRY A;  4NEO A;  2KGD A;  1IMQ A;  2L22 A;  2EHS A;  1YIJ P;  1YJ9 P;  3G0V A;  5HVC A;  1Q82 Q;  2XZ0 D;  2JU2 A;  2FVF A;  2K92 A;  3G1I A;  2WPT A;  2K0Y A;  1EOQ A;  5F2K A;  3WBH A;  2EFJ A;  3G21 A;  2P9X A;  4BPH A;  2M8P A;  1M74 A;  4U0C A;  3CC2 P;  3GJN A;  2MVU A;  2CGQ A;  2FQ2 A;  4XRO A;  1VQ4 P;  1A43 A;  1AF8 A;  3DS3 A;  4XFZ A;  4GR2 A;  1NJI Q;  3CCQ P;  4QKO A;  5KP8 B;  2CQ8 A;  1FR2 A;  2Z44 A;  1E0H A;  2PEO A;  3HZQ A;  1A8O A;  1VQL P;  4MRT C;  1VQP P;  2JGP A;  2OAR A;  3EJD A;  2OTL P;  2N6Y A;  5HGL A;  4BPG A;  1E6J P;  4DG9 A;  1YHQ P;  4BPF A;  3DPH A;  3CCL P;  3DS0 A;  3EJE A;  5HV8 A;  1CEI A;  3CCR P;  1K30 A;  1KQS O;  2PEI A;  1RNI A;  4IPY A;  2GDX A;  2KOP A;  1L0I A;  2MF4 A;  2LTE A;  3RG2 A;  1N8R Q;  3G71 P;  2PY8 A;  1W2B O;  1Q86 Q;  2Z46 A;  5HGO A;  2AF8 A;  5JPA A;  2FHS C;  2PEJ A;  3DS4 A;  1IMP A;  4PWV B;  1L0H A;  3G29 A;  3G28 A;  2JU1 A;  1ZNV A;  2PEK A;  2GZJ A;  2K5X A;  2AFD A;  2GYK A;  1UNK A;  2ONT A;  2E1M A;  3CMA P;  2LIW A;  4R0M A;  4U0A A;  3DS5 A;  2MD9 A;  5BS1 A;  3OW2 O;  1BAJ A;  4UHP B;  2MR8 A;  4U0D A;  5I4T G;  1M6E X;  1UJZ A;  2KOD A;  5HGM A;  1GXH A;  2X2B A;  1Z6M A;  3Q20 A;  5EJD A;  1JJ2 O;  3NY7 B;  4H2X C;  1F80 D;  4GR6 A;  2K0D X;  2LOL A;  1T8K A;  3NTE A;  4U0E A;  1GPJ A;  1EIA A;  2N5H A;  3DS2 A;  3G26 A;  1VQ7 P;  3CCE P;  2EHT A;  5CZD B;  2BHV A;  1QRJ A;  2LF4 A;  1K8A Q;  4H2Y C;  2JQ4 A;  2KOO A;  3U43 A;  2BUO A;  2VSQ A;  1VHN A;  1Q81 Q;  2JBG A;  4H2W C;  2CNR A;  2XT1 A;  5F2O A;  2PEM A;  2XXM A;  4WYM A;  3MGE A;  2LIU A;  1VQN P;  1KC8 Q;  2CWO A;  4F37 A;  2KOQ A;  3G4S P;  2GZF A;  5HGN A;  3E2D A;  2MY5 A;  2GDW A;  5KP6 B;  2LPK A;  2VLP A;  2AVA A;  2XZ1 C;  4CA3 A;  1ACP A;  2KWL A;  3G6E P;  1X3O A;  4IZ6 A;  4XFX A;  3H0D A;  3CPW O;  2GZI A;  2VLO A;  3VRL C;  2K0X A;  5F2N A;  3P05 A;  2LKI A;  1QVF O;  2GDY A;  2M8N A;  1Q7Y Q;  2VLQ A;  3M1M A;  2EIA A;  5DCK A;  2KG6 A;  1AYI A;  2FAD A;  1YIT P;  2PNG A;  1KD1 Q;  1VQ6 P;  2FAC A;  4PXH B;  4COC A;  2FAE A;  1VQ9 P;  3LMO A;  3CD6 P;  1D1D A;  1YJW P;  3CCV P;  2LML A;  2L9F A;  1GXG A;  3CCS P;  3I56 P;  2QEX P;  1K9M Q;  1NQ4 A;  1KLP A;  1IUQ A;  2FVA A;  3H47 A;  2KGC A;  4XRQ A;  3CME P;  2K2Q A; 
#chains in the Genus database with same CATH homology
 3I55 P;  2JYG A;  2BUO A;  2XT1 A;  3DS0 A;  3RG6 C;  5F2O A;  2PEM A;  4PH0 A;  2XXM A;  4WYM A;  3MGE A;  3CCR P;  1K30 A;  1KQS O;  1YJN P;  3HYB A;  1M1K Q;  4U0B A;  2PEI A;  3CCU P;  1VQN P;  1S72 P;  1RNI A;  4IPY A;  2JYL A;  2M8L A;  4XFY A;  1KC8 Q;  2CWO A;  3CC4 P;  4M0I A;  3G4S P;  1M90 Q;  1RO2 A;  5HGN A;  3LRY A;  3E2D A;  1N8R Q;  3G71 P;  3CME P;  2PY8 A;  1VQ8 P;  1QVG O;  2Z45 A;  2JO0 A;  1YIJ P;  1YJ9 P;  1W2B O;  1Q86 Q;  3G0V A;  2PEN A;  2Z46 A;  1VQM P;  5HGO A;  1ZMB A;  1Q82 Q;  3G6E P;  5JPA A;  2PEJ A;  4XFX A;  3H0D A;  3DS4 A;  3CPW O;  4U0F A;  5BS2 A;  3G29 A;  3G28 A;  3G1I A;  3H4E A;  2PEK A;  1YI2 P;  1RO0 A;  3VRL C;  1EOQ A;  5F2K A;  3WBH A;  3CC7 P;  5F2N A;  3P05 A;  2QA4 P;  2EFJ A;  1QVF O;  1VQ5 P;  1VQO P;  2ONT A;  2E1M A;  3G21 A;  3CMA P;  2M8N A;  1Q7Y Q;  2P9X A;  4U0A A;  3DS5 A;  2XV6 A;  3M1M A;  1M74 A;  2M8P A;  4QNB A;  4U0C A;  2EIA A;  3CC2 P;  5DCK A;  4XRO A;  2OTJ P;  5BS1 A;  3G1G A;  1VQ4 P;  3OW2 O;  1YIT P;  1A43 A;  3DTJ A;  1KD1 Q;  3DS3 A;  1VQ6 P;  1BAJ A;  4COC A;  4U0D A;  4XFZ A;  4GR2 A;  5I4T G;  1NJI Q;  3CCQ P;  1AUM A;  1M6E X;  2KOD A;  5HGM A;  1VQ9 P;  2Z44 A;  3Q20 A;  3CCM P;  1JJ2 O;  2PEO A;  3HZQ A;  3CD6 P;  1D1D A;  1A8O A;  1YJW P;  4GR6 A;  1VQL P;  2PEQ A;  1K73 Q;  1VQP P;  3CCV P;  2OAR A;  3NTE A;  3CCL P;  3CXC O;  4U0E A;  1M6N A;  1EIA A;  3CCS P;  3I56 P;  2L6E A;  2OTL P;  3DS2 A;  3G26 A;  3B5I A;  1VQ7 P;  4COP A;  2QEX P;  1K9M Q;  3DS1 A;  5HGL A;  2EG5 A;  1VQK P;  3CCJ P;  3CCE P;  4PH1 A;  2BHV A;  1QRJ A;  2LF4 A;  2DGY A;  1K8A Q;  1E6J P;  1IUQ A;  1YHQ P;  3H47 A;  4XRQ A;  3DPH A;  1Q81 Q; 
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