3G26A

Crystal structure of the c-terminal domain of the rous sarcoma virus capsid protein: mutant a184c
Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
77
structure length
77
Chain Sequence
AGPWADIMQGPSESFVDFANRLIKAVEGSDLPPSCRAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Rous sarcoma virus
publication title Proton-linked dimerization of a retroviral capsid protein initiates capsid assembly
pubmed doi rcsb
molecule keywords Gag polyprotein
total genus 25
structure length 77
sequence length 77
ec nomenclature ec 3.4.23.-:
pdb deposition date 2009-01-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3g26A00
3LRYA 4COCA 4COPA 1AUMA 3DS0A 4U0AA 2XXMA 4U0DA 4WYMA 4XFXA 4XRQA 5HGLA 3VRLC 1D1DA 2JYLA 1QRJA 5DCKA 2L6EA 3P05A 2LF4A 1BAJA 3NTEA 3DS3A 2M8PA 2BUOA 2M8NA 1A43A 4IPYA 2EIAA 1E6JP 3G0VA 4M0IA 4U0CA 3DS4A 4U0FA 4XFZA 3DPHA 5HGMA 5HGOA 3DS2A 4U0EA 3DTJA 5I4TG 3G1GA 3H4EA 4XROA 1A8OA 4XFYA 3H47A 3G1IA 3DS5A 4PH1A 2ONTA 4U0BA 3DS1A 2M8LA 3G29A 3MGEA 1EOQA 2JYGA 5HGNA 2JO0A 2KODA 1EIAA 4PH0A 3G26A 3G21A 2XT1A 4QNBA 5JPAA 3G28A 2XV6A
chains in the Genus database with same CATH superfamily
1NJIQ 3GJNA 1YJWP 4BPGA 1YHQP 2BUOA 2JBGA 1UJZA 1VQ7P 1IMQA 4U0BA 4R0MA 2PEKA 4QNBA 2PEJA 1L0HA 3CCUP 1DV5A 2XXMA 2PNGA 5KP8B 2JU1A 3M1MA 2GDWA 2Z45A 2KG8A 2GZJA 3CPWO 5I4TG 1M74A 3DPHA 1KD1Q 3DS5A 2E1MA 2KW2A 3G29A 2ERHA 5HGNA 2JU2A 2JYGA 2JO0A 2L0QA 3G21A 1KLPA 3CCMP 2XZ0D 2MF4A 1D1DA 2CQ8A 3I56P 2K93A 1VQPP 1M6NA 3CCRP 2LL8A 5BS2A 1OR5A 2KOQA 3CC4P 2FAEA 2P9XA 4IZ6A 3DS2A 3CC2P 2L9FA 4XFYA 5EJDA 4BPHA 4PH0A 3CCEP 1Q81Q 2JQ4A 2ROQA 1VQ9P 3G71P 3P05A 1UNKA 2N6ZA 1YJ9P 4PXHB 2VLPA 2Z46A 5HGOA 4XROA 2QEXP 1CEIA 2K5XA 2AFEA 4U0CA 4HKGA 2FQ0A 2PEOA 3G1GA 3GZMA 3CE7A 4PH1A 4BPFA 1N8RQ 3DS1A 2PEQA 2N50A 2KWLA 4COCA 1M1KQ 2VLNA 2MVUA 2MD9A 3HYBA 1W2BO 2N5HA 4H2XC 1FR2A 1VQLP 1VQKP 2KORA 2KODA 3GZLA 1VQ4P 2CG5B 1RO0A 4XRQA 2K0YA 3VRLC 5KP6B 2JYLA 1Q86Q 2FVFA 4CA3A 2M8NA 3HZQA 4MRTC 1VQMP 1AYIA 2VLOA 3DTJA 2M5RA 3EJEA 3CMEP 2N98A 1VQ5P 2CGQA 1K9MQ 1BAJA 2FVEA 2QA4P 1K30A 2GZIA 2KG9A 4M0IA 1KC8Q 3H0DA 3CC7P 3GKLC 3RG2A 1RO2A 1VQ6P 2XT1A 5EW5E 5F2KA 3LRYA 4COPA 3CD6P 2OTLP 4U0DA 2OTJP 2XZ1C 2KGCA 1YITP 1ZNVA 5CZDB 1NQ4A 1HY8A 2KG6A 2LMLA 1IMPA 2K0XA 2GZGA 2FQ1A 2LIUA 3G1IA 4GR6A 2AF8A 1GXHA 1X3OA 2LPKA 3E2DA 2FADA 3U43A 1QVGO 2GDYA 2KGAA 1IUQA 2MY5A 2DGYA 1DNYA 2JGPA 3G0VA 2JB0A 5F2NA 3EJDA 2AFDA 4U0EA 1YIJP 4UHPB 2LIWA 2EHSA 1VQNP 3I55P 3CMAP 2WPTA 3WBHA 4DG9A 3CXCO 4U0AA 2EG5A 3G4SP 5DCKA 1ACPA 1Q7YQ 3DS3A 5KP7B 1L0IA 1M6EX 1A43A 1E6JP 2Z44A 2FVAA 3DS4A 3EJBA 2FACA 2KR5A 2M8LA 4QKOA 3G28A 1M90Q 3CCQP 3CCSP 2KGDA 4GR2A 2L22A 3LMOA 2VLQA 1ZMBA 2PY8A 1GXGA 1YJNP 1YI2P 1K73Q 3RG6C 4XFZA 3CCJP 2PENA 4F37A 2K2QA 2BHVA 2NO8A 2CWOA 2GZFA 3Q20A 1QVFO 1AF8A 3NY7B 2KOOA 1VQ8P 1AUMA 2MVVA 5HGLA 1KQSO 2GZEA 7CEIA 2LKIA 2L6EA 4H2WC 2KOSA 2GDXA 5HV8A 2M8PA 5HVCA 2PEIA 3B4QA 4H2YC 4U0FA 2EHTA 1RNIA 1BXIA 1T8KA 2VSQA 4PWVB 5JPAA 3OW2O 2XV6A 3CCVP 2PEMA 3DS0A 2K94A 4XFXA 2N6YA 2X2BA 1Q82Q 1F80D 1HQBA 4IPYA 2EIAA 3G6EP 2MR8A 5HGMA 2N5IA 3H4EA 2LOLA 2JAZA 1EOQA 1EIAA 5F2OA 2LTEA 1VQOP 4WYMA 2K0DX 3CCLP 1QRJA 2K92A 2LF4A 2DNWA 3NTEA 2L4BA 1JJ2O 1VKUA 2KGEA 1K8AQ 1Z6MA 2EFJA 3B5IA 1EMVA 3MGEA 3G26A 4NEOA 2GYKA 1S72P 1MZ8A 2KOPA 5BS1A 1VHNA 2MR7A 2OARA 2AVAA 1A8OA 3H47A 2ONTA 2FHSC 1GPJA 1E0HA 2CNRA 2FQ2A 2QNWA
chains in the Genus database with same CATH topology
3LRYA 4COPA 1VQ8P 3CD6P 2OTLP 1AUMA 5HGLA 4U0DA 1NJIQ 1KQSO 2OTJP 1YITP 2L6EA 1YJWP 2M8PA 2BUOA 2PEIA 1YHQP 1VQ7P 4U0CA 4U0FA 2PEOA 3G1GA 1RNIA 4PH1A 3G1IA 4U0BA 1N8RQ 3DS1A 2PEQA 4GR6A 2PEKA 4QNBA 5JPAA 3OW2O 2PEJA 3CCUP 2XV6A 3CCVP 3E2DA 1QVGO 4COCA 2PEMA 3DS0A 1M1KQ 2XXMA 4XFXA 1IUQA 3M1MA 1Q82Q 2Z45A 2DGYA 4IPYA 3HYBA 2EIAA 3G6EP 3G0VA 5HGMA 1W2BO 3CPWO 1M74A 3DPHA 5F2NA 5I4TG 4U0EA 1YIJP 3H4EA 1KD1Q 3DS5A 1VQLP 2E1MA 3G29A 1VQNP 5HGNA 1EOQA 2JYGA 1VQKP 2JO0A 2KODA 1EIAA 5F2OA 3G21A 3I55P 1VQ4P 3CCMP 1RO0A 3CMAP 3WBHA 4U0AA 4XRQA 2EG5A 4WYMA 3VRLC 3CXCO 3G4SP 1VQOP 1D1DA 2JYLA 1Q86Q 1QRJA 5DCKA 3CCLP 2LF4A 3NTEA 1Q7YQ 1JJ2O 3DS3A 2M8NA 3HZQA 1M6EX 1A43A 3I56P 1VQPP 1M6NA 3CCRP 1E6JP 2Z44A 5BS2A 3DS4A 1K8AQ 2P9XA 2EFJA 1VQMP 3CC4P 3DS2A 3DTJA 3CC2P 3B5IA 4XFYA 2M8LA 3MGEA 3CMEP 4PH0A 3G26A 3CCEP 3G28A 1S72P 1M90Q 3CCQP 1Q81Q 1VQ5P 3CCSP 4GR2A 1K9MQ 5BS1A 1ZMBA 2PY8A 1VQ9P 3G71P 3P05A 1YJNP 1BAJA 1YI2P 2QA4P 1K30A 2OARA 1YJ9P 1K73Q 3RG6C 4XFZA 2Z46A 4M0IA 5HGOA 3CCJP 2PENA 1KC8Q 2BHVA 3H0DA 4XROA 2QEXP 3CC7P 1A8OA 3H47A 2ONTA 2CWOA 1RO2A 1VQ6P 3Q20A 2XT1A 1QVFO 5F2KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LRY A;  4COC A;  4COP A;  1AUM A;  3DS0 A;  4U0A A;  2XXM A;  4U0D A;  4WYM A;  4XFX A;  4XRQ A;  5HGL A;  3VRL C;  1D1D A;  2JYL A;  1QRJ A;  5DCK A;  2L6E A;  3P05 A;  2LF4 A;  1BAJ A;  3NTE A;  3DS3 A;  2M8P A;  2BUO A;  2M8N A;  1A43 A;  4IPY A;  2EIA A;  1E6J P;  3G0V A;  4M0I A;  4U0C A;  3DS4 A;  4U0F A;  4XFZ A;  3DPH A;  5HGM A;  5HGO A;  3DS2 A;  4U0E A;  3DTJ A;  5I4T G;  3G1G A;  3H4E A;  4XRO A;  1A8O A;  4XFY A;  3H47 A;  3G1I A;  3DS5 A;  4PH1 A;  2ONT A;  4U0B A;  3DS1 A;  2M8L A;  3G29 A;  3MGE A;  1EOQ A;  2JYG A;  5HGN A;  2JO0 A;  2KOD A;  1EIA A;  4PH0 A;  3G26 A;  3G21 A;  2XT1 A;  4QNB A;  5JPA A;  3G28 A;  2XV6 A; 
#chains in the Genus database with same CATH topology
 1NJI Q;  3GJN A;  1YJW P;  4BPG A;  1YHQ P;  2BUO A;  2JBG A;  1UJZ A;  1VQ7 P;  1IMQ A;  4U0B A;  4R0M A;  2PEK A;  4QNB A;  2PEJ A;  1L0H A;  3CCU P;  1DV5 A;  2XXM A;  2PNG A;  5KP8 B;  2JU1 A;  3M1M A;  2GDW A;  2Z45 A;  2KG8 A;  2GZJ A;  3CPW O;  5I4T G;  1M74 A;  3DPH A;  1KD1 Q;  3DS5 A;  2E1M A;  2KW2 A;  3G29 A;  2ERH A;  5HGN A;  2JU2 A;  2JYG A;  2JO0 A;  2L0Q A;  3G21 A;  1KLP A;  3CCM P;  2XZ0 D;  2MF4 A;  1D1D A;  2CQ8 A;  3I56 P;  2K93 A;  1VQP P;  1M6N A;  3CCR P;  2LL8 A;  5BS2 A;  1OR5 A;  2KOQ A;  3CC4 P;  2FAE A;  2P9X A;  4IZ6 A;  3DS2 A;  3CC2 P;  2L9F A;  4XFY A;  5EJD A;  4BPH A;  4PH0 A;  3CCE P;  1Q81 Q;  2JQ4 A;  2ROQ A;  1VQ9 P;  3G71 P;  3P05 A;  1UNK A;  2N6Z A;  1YJ9 P;  4PXH B;  2VLP A;  2Z46 A;  5HGO A;  4XRO A;  2QEX P;  1CEI A;  2K5X A;  2AFE A;  4U0C A;  4HKG A;  2FQ0 A;  2PEO A;  3G1G A;  3GZM A;  3CE7 A;  4PH1 A;  4BPF A;  1N8R Q;  3DS1 A;  2PEQ A;  2N50 A;  2KWL A;  4COC A;  1M1K Q;  2VLN A;  2MVU A;  2MD9 A;  3HYB A;  1W2B O;  2N5H A;  4H2X C;  1FR2 A;  1VQL P;  1VQK P;  2KOR A;  2KOD A;  3GZL A;  1VQ4 P;  2CG5 B;  1RO0 A;  4XRQ A;  2K0Y A;  3VRL C;  5KP6 B;  2JYL A;  1Q86 Q;  2FVF A;  4CA3 A;  2M8N A;  3HZQ A;  4MRT C;  1VQM P;  1AYI A;  2VLO A;  3DTJ A;  2M5R A;  3EJE A;  3CME P;  2N98 A;  1VQ5 P;  2CGQ A;  1K9M Q;  1BAJ A;  2FVE A;  2QA4 P;  1K30 A;  2GZI A;  2KG9 A;  4M0I A;  1KC8 Q;  3H0D A;  3CC7 P;  3GKL C;  3RG2 A;  1RO2 A;  1VQ6 P;  2XT1 A;  5EW5 E;  5F2K A;  3LRY A;  4COP A;  3CD6 P;  2OTL P;  4U0D A;  2OTJ P;  2XZ1 C;  2KGC A;  1YIT P;  1ZNV A;  5CZD B;  1NQ4 A;  1HY8 A;  2KG6 A;  2LML A;  1IMP A;  2K0X A;  2GZG A;  2FQ1 A;  2LIU A;  3G1I A;  4GR6 A;  2AF8 A;  1GXH A;  1X3O A;  2LPK A;  3E2D A;  2FAD A;  3U43 A;  1QVG O;  2GDY A;  2KGA A;  1IUQ A;  2MY5 A;  2DGY A;  1DNY A;  2JGP A;  3G0V A;  2JB0 A;  5F2N A;  3EJD A;  2AFD A;  4U0E A;  1YIJ P;  4UHP B;  2LIW A;  2EHS A;  1VQN P;  3I55 P;  3CMA P;  2WPT A;  3WBH A;  4DG9 A;  3CXC O;  4U0A A;  2EG5 A;  3G4S P;  5DCK A;  1ACP A;  1Q7Y Q;  3DS3 A;  5KP7 B;  1L0I A;  1M6E X;  1A43 A;  1E6J P;  2Z44 A;  2FVA A;  3DS4 A;  3EJB A;  2FAC A;  2KR5 A;  2M8L A;  4QKO A;  3G28 A;  1M90 Q;  3CCQ P;  3CCS P;  2KGD A;  4GR2 A;  2L22 A;  3LMO A;  2VLQ A;  1ZMB A;  2PY8 A;  1GXG A;  1YJN P;  1YI2 P;  1K73 Q;  3RG6 C;  4XFZ A;  3CCJ P;  2PEN A;  4F37 A;  2K2Q A;  2BHV A;  2NO8 A;  2CWO A;  2GZF A;  3Q20 A;  1QVF O;  1AF8 A;  3NY7 B;  2KOO A;  1VQ8 P;  1AUM A;  2MVV A;  5HGL A;  1KQS O;  2GZE A;  7CEI A;  2LKI A;  2L6E A;  4H2W C;  2KOS A;  2GDX A;  5HV8 A;  2M8P A;  5HVC A;  2PEI A;  3B4Q A;  4H2Y C;  4U0F A;  2EHT A;  1RNI A;  1BXI A;  1T8K A;  2VSQ A;  4PWV B;  5JPA A;  3OW2 O;  2XV6 A;  3CCV P;  2PEM A;  3DS0 A;  2K94 A;  4XFX A;  2N6Y A;  2X2B A;  1Q82 Q;  1F80 D;  1HQB A;  4IPY A;  2EIA A;  3G6E P;  2MR8 A;  5HGM A;  2N5I A;  3H4E A;  2LOL A;  2JAZ A;  1EOQ A;  1EIA A;  5F2O A;  2LTE A;  1VQO P;  4WYM A;  2K0D X;  3CCL P;  1QRJ A;  2K92 A;  2LF4 A;  2DNW A;  3NTE A;  2L4B A;  1JJ2 O;  1VKU A;  2KGE A;  1K8A Q;  1Z6M A;  2EFJ A;  3B5I A;  1EMV A;  3MGE A;  3G26 A;  4NEO A;  2GYK A;  1S72 P;  1MZ8 A;  2KOP A;  5BS1 A;  1VHN A;  2MR7 A;  2OAR A;  2AVA A;  1A8O A;  3H47 A;  2ONT A;  2FHS C;  1GPJ A;  1E0H A;  2CNR A;  2FQ2 A;  2QNW A; 
#chains in the Genus database with same CATH homology
 3LRY A;  4COP A;  1VQ8 P;  3CD6 P;  2OTL P;  1AUM A;  5HGL A;  4U0D A;  1NJI Q;  1KQS O;  2OTJ P;  1YIT P;  2L6E A;  1YJW P;  2M8P A;  2BUO A;  2PEI A;  1YHQ P;  1VQ7 P;  4U0C A;  4U0F A;  2PEO A;  3G1G A;  1RNI A;  4PH1 A;  3G1I A;  4U0B A;  1N8R Q;  3DS1 A;  2PEQ A;  4GR6 A;  2PEK A;  4QNB A;  5JPA A;  3OW2 O;  2PEJ A;  3CCU P;  2XV6 A;  3CCV P;  3E2D A;  1QVG O;  4COC A;  2PEM A;  3DS0 A;  1M1K Q;  2XXM A;  4XFX A;  1IUQ A;  3M1M A;  1Q82 Q;  2Z45 A;  2DGY A;  4IPY A;  3HYB A;  2EIA A;  3G6E P;  3G0V A;  5HGM A;  1W2B O;  3CPW O;  1M74 A;  3DPH A;  5F2N A;  5I4T G;  4U0E A;  1YIJ P;  3H4E A;  1KD1 Q;  3DS5 A;  1VQL P;  2E1M A;  3G29 A;  1VQN P;  5HGN A;  1EOQ A;  2JYG A;  1VQK P;  2JO0 A;  2KOD A;  1EIA A;  5F2O A;  3G21 A;  3I55 P;  1VQ4 P;  3CCM P;  1RO0 A;  3CMA P;  3WBH A;  4U0A A;  4XRQ A;  2EG5 A;  4WYM A;  3VRL C;  3CXC O;  3G4S P;  1VQO P;  1D1D A;  2JYL A;  1Q86 Q;  1QRJ A;  5DCK A;  3CCL P;  2LF4 A;  3NTE A;  1Q7Y Q;  1JJ2 O;  3DS3 A;  2M8N A;  3HZQ A;  1M6E X;  1A43 A;  3I56 P;  1VQP P;  1M6N A;  3CCR P;  1E6J P;  2Z44 A;  5BS2 A;  3DS4 A;  1K8A Q;  2P9X A;  2EFJ A;  1VQM P;  3CC4 P;  3DS2 A;  3DTJ A;  3CC2 P;  3B5I A;  4XFY A;  2M8L A;  3MGE A;  3CME P;  4PH0 A;  3G26 A;  3CCE P;  3G28 A;  1S72 P;  1M90 Q;  3CCQ P;  1Q81 Q;  1VQ5 P;  3CCS P;  4GR2 A;  1K9M Q;  5BS1 A;  1ZMB A;  2PY8 A;  1VQ9 P;  3G71 P;  3P05 A;  1YJN P;  1BAJ A;  1YI2 P;  2QA4 P;  1K30 A;  2OAR A;  1YJ9 P;  1K73 Q;  3RG6 C;  4XFZ A;  2Z46 A;  4M0I A;  5HGO A;  3CCJ P;  2PEN A;  1KC8 Q;  2BHV A;  3H0D A;  4XRO A;  2QEX P;  3CC7 P;  1A8O A;  3H47 A;  2ONT A;  2CWO A;  1RO2 A;  1VQ6 P;  3Q20 A;  2XT1 A;  1QVF O;  5F2K A; 
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