3LMOA

Crystal structure of specialized acyl carrier protein (rpa2022) from rhodopseudomonas palustris, northeast structural genomics consortium target rpr324
Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
94
structure length
94
Chain Sequence
TSTFDRVATIIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWTQEVNDGKATTEQYFVLKNLAARIDELVAAKGALE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (4-16)AH2 (37-51)AH5 (77-94)TI1 (24-27)TVIII1 (28-31)AH4 (71-75)TIV2 (31-34)EMPTYO1 (55-57)AH3 (57-66)3H1 (20-22)TI'1 (32-35)Updating...
connected with : NaN
molecule tags Transferase
source organism Rhodopseudomonas palustris
publication title Structure of a specialized acyl carrier protein essential for lipid A biosynthesis with very long-chain fatty acids in open and closed conformations.
pubmed doi rcsb
molecule keywords Specialized acyl carrier protein
total genus 30
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2010-01-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 3lmoA00
2JU2A 4BPHA 2KGCA 2FHSC 2N50A 2FQ0A 2KG8A 2N6ZA 2AF8A 2MVVA 2MY5A 1L0IA 2L0QA 2QNWA 2L4BA 3NY7B 4PXHB 2LPKA 2KW2A 3GZLA 1DV5A 2JQ4A 3CE7A 2AFDA 4HKGA 1HY8A 2XZ1C 2VSQA 3EJEA 2MF4A 2KOQA 3EJDA 2CNRA 3GZMA 2MR7A 2N6YA 3RG2A 2GDXA 2CG5B 2LKIA 2FQ1A 1NQ4A 5KP7B 2M5RA 2FACA 1KLPA 2MVUA 1ACPA 2FVAA 2LMLA 2K92A 2L22A 2FAEA 2CGQA 2EHSA 5CZDB 1X3OA 2KGDA 2LIUA 2JU1A 2KOSA 2GDYA 2KOPA 2LTEA 5KP8B 1T8KA 1L0HA 2AFEA 4PWVB 4R0MA 2GDWA 1DNYA 4NEOA 2PNGA 1HQBA 2MR8A 1F80D 2LIWA 2K93A 2L9FA 2ROQA 4DG9A 5KP6B 2FADA 4H2YC 2FVFA 2KGAA 2CQ8A 2KGEA 2EHTA 2KG6A 2LOLA 2XZ0D 4IZ6A 2N5HA 2N5IA 2KWLA 2K2QA 4H2XC 1OR5A 2AVAA 2K0XA 1AF8A 2FQ2A 2KR5A 1VKUA 4BPGA 2K94A 2JGPA 4BPFA 2LL8A 3LMOA 2X2BA 5HV8A 3EJBA 5EJDA 2KORA 2FVEA 4H2WC 2DNWA 2K0YA 2KOOA 4MRTC 2KG9A 4CA3A 2MD9A 5HVCA 2N98A
chains in the Genus database with same CATH superfamily
1YITP 2JYGA 2FHSC 2N50A 2KG8A 5HGOA 2EG5A 1ZMBA 2L0QA 2QNWA 2KW2A 3G4SP 3CD6P 1N8RQ 3P05A 1AUMA 2VSQA 3CCMP 3EJDA 1K30A 4XROA 2M8NA 1FR2A 3GZMA 3G29A 3CCRP 3RG2A 2GDXA 1K9MQ 2QEXP 1KQSO 2FQ1A 2M5RA 1GXHA 2PEOA 2DGYA 2CGQA 3U43A 2EHSA 1QVGO 4U0AA 1GXGA 1RO0A 2LTEA 2JO0A 2GZEA 5KP8B 1L0HA 2VLOA 5DCKA 4IPYA 1AYIA 1HQBA 3WBHA 2Z46A 5BS1A 2OARA 4XRQA 4DG9A 3DS3A 3CCQP 2FADA 1VQ5P 3H47A 2JYLA 3HYBA 3DS0A 2LOLA 1VQKP 2N5HA 3DS5A 3DS4A 2N5IA 2GZGA 3DS2A 3Q20A 2KR5A 1VQ4P 1JJ2O 4U0DA 5HV8A 3H4EA 2FVEA 2PY8A 3DTJA 2KOOA 2Z45A 2KG9A 5HVCA 4COPA 3VRLC 2M8LA 2FQ0A 1UJZA 3G28A 1RO2A 2MVVA 2MY5A 3OW2O 2LF4A 4PXHB 1DV5A 1NJIQ 5HGNA 1A8OA 4HKGA 1HY8A 1M1KQ 2XZ1C 1VQ8P 3NTEA 2PEQA 1M6NA 2MF4A 2KOQA 4PH1A 1VQ9P 1KD1Q 1QRJA 2CG5B 4U0BA 4GR6A 3G0VA 1IUQA 3G21A 4WYMA 1IMPA 2MVUA 1ACPA 4XFXA 2L6EA 5I4TG 5CZDB 2PEIA 1Q86Q 3RG6C 3G1GA 2GDYA 1K8AQ 1E6JP 1UNKA 1EIAA 3CC7P 2AFEA 1S72P 5F2OA 5F2NA 4GR2A 2PNGA 2BUOA 2JAZA 1F80D 1Q7YQ 2K93A 2ROQA 5KP6B 4U0FA 1EOQA 1VQ7P 3HZQA 4PH0A 1YJNP 2KGAA 3G71P 1VQOP 2E1MA 2KG6A 2GZFA 2XZ0D 2XXMA 4XFZA 1BAJA 2KODA 2VLNA 1AF8A 2K0XA 1M74A 1M90Q 1YIJP 2CWOA 1E0HA 4BPFA 3I56P 1EMVA 3EJBA 5EJDA 2KORA 1VQLP 1A43A 1YJWP 1BXIA 4CA3A 2MD9A 2N98A 7CEIA 5HGLA 2JU2A 4BPHA 2KGCA 2GZIA 2AF8A 2OTJP 3G6EP 5JPAA 2L4BA 2PENA 4QNBA 3GZLA 3CE7A 3I55P 1YHQP 2VLQA 3B4QA 3CC4P 2MR7A 2N6YA 1RNIA 2ERHA 2LKIA 2JB0A 3LRYA 2PEKA 1VQPP 2FVAA 2LMLA 2FAEA 2KGDA 2LIUA 2JU1A 1Z6MA 3M1MA 3MGEA 1T8KA 4PWVB 1VQMP 1IMQA 4R0MA 4NEOA 3CXCO 3CCEP 4H2YC 1M6EX 2K5XA 2CQ8A 3G26A 2KGEA 5HGMA 2QA4P 5BS2A 4H2XC 1OR5A 3CMAP 3CCUP 2PEMA 1VKUA 2XT1A 3DPHA 3DS1A 1K73Q 2K94A 2M8PA 3G1IA 2EFJA 1CEIA 2LL8A 3LMOA 2WPTA 2Z44A 2P9XA 4MRTC 4F37A 3CCVP 2N6ZA 1D1DA 3CPWO 1L0IA 2OTLP 3NY7B 2LPKA 4UHPB 2JQ4A 3GJNA 2AFDA 2PEJA 3EJEA 2GYKA 4COCA 1VQNP 2CNRA 3H0DA 1NQ4A 5KP7B 2FACA 1KLPA 3CCLP 2K92A 2L22A 1KC8Q 5EW5E 1X3OA 4QKOA 1VQ6P 1QVFO 3CC2P 1MZ8A 2KOSA 4U0CA 2KOPA 1Q82Q 3B5IA 3GKLC 2GDWA 2JBGA 4U0EA 1DNYA 2MR8A 2GZJA 2LIWA 2L9FA 2XV6A 3E2DA 2FVFA 3CCSP 2EHTA 2NO8A 1W2BO 4IZ6A 2KWLA 2K2QA 2ONTA 2AVAA 4M0IA 2FQ2A 1ZNVA 2BHVA 1YJ9P 4BPGA 1VHNA 1YI2P 2K0DX 2VLPA 1Q81Q 5F2KA 2JGPA 4XFYA 2EIAA 2X2BA 4H2WC 3CMEP 2DNWA 2K0YA 1GPJA 3CCJP
chains in the Genus database with same CATH topology
2JU2A 4BPHA 2KGCA 2FHSC 2N50A 2FQ0A 2KG8A 2N6ZA 2AF8A 2MVVA 2MY5A 1L0IA 2L0QA 2QNWA 2L4BA 3NY7B 4PXHB 2LPKA 2KW2A 3GZLA 1DV5A 2JQ4A 3CE7A 2AFDA 4HKGA 1HY8A 2XZ1C 2VSQA 3EJEA 2MF4A 2KOQA 3EJDA 2CNRA 3GZMA 2MR7A 2N6YA 3RG2A 2GDXA 2CG5B 2LKIA 2FQ1A 1NQ4A 5KP7B 2M5RA 2FACA 1KLPA 2MVUA 1ACPA 2FVAA 2LMLA 2K92A 2L22A 2FAEA 2CGQA 2EHSA 5CZDB 1X3OA 2KGDA 2LIUA 2JU1A 2KOSA 2GDYA 2KOPA 2LTEA 5KP8B 1T8KA 1L0HA 2AFEA 4PWVB 4R0MA 2GDWA 1DNYA 4NEOA 2PNGA 1HQBA 2MR8A 1F80D 2LIWA 2K93A 2L9FA 2ROQA 4DG9A 5KP6B 2FADA 4H2YC 2FVFA 2KGAA 2CQ8A 2KGEA 2EHTA 2KG6A 2LOLA 2XZ0D 4IZ6A 2N5HA 2N5IA 2KWLA 2K2QA 4H2XC 1OR5A 2AVAA 2K0XA 1AF8A 2FQ2A 2KR5A 1VKUA 4BPGA 2K94A 2JGPA 4BPFA 2LL8A 3LMOA 2X2BA 5HV8A 3EJBA 5EJDA 2KORA 2FVEA 4H2WC 2DNWA 2K0YA 2KOOA 4MRTC 2KG9A 4CA3A 2MD9A 5HVCA 2N98A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JU2 A;  4BPH A;  2KGC A;  2FHS C;  2N50 A;  2FQ0 A;  2KG8 A;  2N6Z A;  2AF8 A;  2MVV A;  2MY5 A;  1L0I A;  2L0Q A;  2QNW A;  2L4B A;  3NY7 B;  4PXH B;  2LPK A;  2KW2 A;  3GZL A;  1DV5 A;  2JQ4 A;  3CE7 A;  2AFD A;  4HKG A;  1HY8 A;  2XZ1 C;  2VSQ A;  3EJE A;  2MF4 A;  2KOQ A;  3EJD A;  2CNR A;  3GZM A;  2MR7 A;  2N6Y A;  3RG2 A;  2GDX A;  2CG5 B;  2LKI A;  2FQ1 A;  1NQ4 A;  5KP7 B;  2M5R A;  2FAC A;  1KLP A;  2MVU A;  1ACP A;  2FVA A;  2LML A;  2K92 A;  2L22 A;  2FAE A;  2CGQ A;  2EHS A;  5CZD B;  1X3O A;  2KGD A;  2LIU A;  2JU1 A;  2KOS A;  2GDY A;  2KOP A;  2LTE A;  5KP8 B;  1T8K A;  1L0H A;  2AFE A;  4PWV B;  4R0M A;  2GDW A;  1DNY A;  4NEO A;  2PNG A;  1HQB A;  2MR8 A;  1F80 D;  2LIW A;  2K93 A;  2L9F A;  2ROQ A;  4DG9 A;  5KP6 B;  2FAD A;  4H2Y C;  2FVF A;  2KGA A;  2CQ8 A;  2KGE A;  2EHT A;  2KG6 A;  2LOL A;  2XZ0 D;  4IZ6 A;  2N5H A;  2N5I A;  2KWL A;  2K2Q A;  4H2X C;  1OR5 A;  2AVA A;  2K0X A;  1AF8 A;  2FQ2 A;  2KR5 A;  1VKU A;  4BPG A;  2K94 A;  2JGP A;  4BPF A;  2LL8 A;  3LMO A;  2X2B A;  5HV8 A;  3EJB A;  5EJD A;  2KOR A;  2FVE A;  4H2W C;  2DNW A;  2K0Y A;  2KOO A;  4MRT C;  2KG9 A;  4CA3 A;  2MD9 A;  5HVC A;  2N98 A; 
#chains in the Genus database with same CATH topology
 1YIT P;  2JYG A;  2FHS C;  2N50 A;  2KG8 A;  5HGO A;  2EG5 A;  1ZMB A;  2L0Q A;  2QNW A;  2KW2 A;  3G4S P;  3CD6 P;  1N8R Q;  3P05 A;  1AUM A;  2VSQ A;  3CCM P;  3EJD A;  1K30 A;  4XRO A;  2M8N A;  1FR2 A;  3GZM A;  3G29 A;  3CCR P;  3RG2 A;  2GDX A;  1K9M Q;  2QEX P;  1KQS O;  2FQ1 A;  2M5R A;  1GXH A;  2PEO A;  2DGY A;  2CGQ A;  3U43 A;  2EHS A;  1QVG O;  4U0A A;  1GXG A;  1RO0 A;  2LTE A;  2JO0 A;  2GZE A;  5KP8 B;  1L0H A;  2VLO A;  5DCK A;  4IPY A;  1AYI A;  1HQB A;  3WBH A;  2Z46 A;  5BS1 A;  2OAR A;  4XRQ A;  4DG9 A;  3DS3 A;  3CCQ P;  2FAD A;  1VQ5 P;  3H47 A;  2JYL A;  3HYB A;  3DS0 A;  2LOL A;  1VQK P;  2N5H A;  3DS5 A;  3DS4 A;  2N5I A;  2GZG A;  3DS2 A;  3Q20 A;  2KR5 A;  1VQ4 P;  1JJ2 O;  4U0D A;  5HV8 A;  3H4E A;  2FVE A;  2PY8 A;  3DTJ A;  2KOO A;  2Z45 A;  2KG9 A;  5HVC A;  4COP A;  3VRL C;  2M8L A;  2FQ0 A;  1UJZ A;  3G28 A;  1RO2 A;  2MVV A;  2MY5 A;  3OW2 O;  2LF4 A;  4PXH B;  1DV5 A;  1NJI Q;  5HGN A;  1A8O A;  4HKG A;  1HY8 A;  1M1K Q;  2XZ1 C;  1VQ8 P;  3NTE A;  2PEQ A;  1M6N A;  2MF4 A;  2KOQ A;  4PH1 A;  1VQ9 P;  1KD1 Q;  1QRJ A;  2CG5 B;  4U0B A;  4GR6 A;  3G0V A;  1IUQ A;  3G21 A;  4WYM A;  1IMP A;  2MVU A;  1ACP A;  4XFX A;  2L6E A;  5I4T G;  5CZD B;  2PEI A;  1Q86 Q;  3RG6 C;  3G1G A;  2GDY A;  1K8A Q;  1E6J P;  1UNK A;  1EIA A;  3CC7 P;  2AFE A;  1S72 P;  5F2O A;  5F2N A;  4GR2 A;  2PNG A;  2BUO A;  2JAZ A;  1F80 D;  1Q7Y Q;  2K93 A;  2ROQ A;  5KP6 B;  4U0F A;  1EOQ A;  1VQ7 P;  3HZQ A;  4PH0 A;  1YJN P;  2KGA A;  3G71 P;  1VQO P;  2E1M A;  2KG6 A;  2GZF A;  2XZ0 D;  2XXM A;  4XFZ A;  1BAJ A;  2KOD A;  2VLN A;  1AF8 A;  2K0X A;  1M74 A;  1M90 Q;  1YIJ P;  2CWO A;  1E0H A;  4BPF A;  3I56 P;  1EMV A;  3EJB A;  5EJD A;  2KOR A;  1VQL P;  1A43 A;  1YJW P;  1BXI A;  4CA3 A;  2MD9 A;  2N98 A;  7CEI A;  5HGL A;  2JU2 A;  4BPH A;  2KGC A;  2GZI A;  2AF8 A;  2OTJ P;  3G6E P;  5JPA A;  2L4B A;  2PEN A;  4QNB A;  3GZL A;  3CE7 A;  3I55 P;  1YHQ P;  2VLQ A;  3B4Q A;  3CC4 P;  2MR7 A;  2N6Y A;  1RNI A;  2ERH A;  2LKI A;  2JB0 A;  3LRY A;  2PEK A;  1VQP P;  2FVA A;  2LML A;  2FAE A;  2KGD A;  2LIU A;  2JU1 A;  1Z6M A;  3M1M A;  3MGE A;  1T8K A;  4PWV B;  1VQM P;  1IMQ A;  4R0M A;  4NEO A;  3CXC O;  3CCE P;  4H2Y C;  1M6E X;  2K5X A;  2CQ8 A;  3G26 A;  2KGE A;  5HGM A;  2QA4 P;  5BS2 A;  4H2X C;  1OR5 A;  3CMA P;  3CCU P;  2PEM A;  1VKU A;  2XT1 A;  3DPH A;  3DS1 A;  1K73 Q;  2K94 A;  2M8P A;  3G1I A;  2EFJ A;  1CEI A;  2LL8 A;  3LMO A;  2WPT A;  2Z44 A;  2P9X A;  4MRT C;  4F37 A;  3CCV P;  2N6Z A;  1D1D A;  3CPW O;  1L0I A;  2OTL P;  3NY7 B;  2LPK A;  4UHP B;  2JQ4 A;  3GJN A;  2AFD A;  2PEJ A;  3EJE A;  2GYK A;  4COC A;  1VQN P;  2CNR A;  3H0D A;  1NQ4 A;  5KP7 B;  2FAC A;  1KLP A;  3CCL P;  2K92 A;  2L22 A;  1KC8 Q;  5EW5 E;  1X3O A;  4QKO A;  1VQ6 P;  1QVF O;  3CC2 P;  1MZ8 A;  2KOS A;  4U0C A;  2KOP A;  1Q82 Q;  3B5I A;  3GKL C;  2GDW A;  2JBG A;  4U0E A;  1DNY A;  2MR8 A;  2GZJ A;  2LIW A;  2L9F A;  2XV6 A;  3E2D A;  2FVF A;  3CCS P;  2EHT A;  2NO8 A;  1W2B O;  4IZ6 A;  2KWL A;  2K2Q A;  2ONT A;  2AVA A;  4M0I A;  2FQ2 A;  1ZNV A;  2BHV A;  1YJ9 P;  4BPG A;  1VHN A;  1YI2 P;  2K0D X;  2VLP A;  1Q81 Q;  5F2K A;  2JGP A;  4XFY A;  2EIA A;  2X2B A;  4H2W C;  3CME P;  2DNW A;  2K0Y A;  1GPJ A;  3CCJ P; 
#chains in the Genus database with same CATH homology
 2JU2 A;  4BPH A;  2KGC A;  2FHS C;  2N50 A;  2FQ0 A;  2KG8 A;  2N6Z A;  2AF8 A;  2MVV A;  2MY5 A;  1L0I A;  2L0Q A;  2QNW A;  2L4B A;  3NY7 B;  4PXH B;  2LPK A;  2KW2 A;  3GZL A;  1DV5 A;  2JQ4 A;  3CE7 A;  2AFD A;  4HKG A;  1HY8 A;  2XZ1 C;  2VSQ A;  3EJE A;  2MF4 A;  2KOQ A;  3EJD A;  2CNR A;  3GZM A;  2MR7 A;  2N6Y A;  3RG2 A;  2GDX A;  2CG5 B;  2LKI A;  2FQ1 A;  1NQ4 A;  5KP7 B;  2M5R A;  2FAC A;  1KLP A;  2MVU A;  1ACP A;  2FVA A;  2LML A;  2K92 A;  2L22 A;  2FAE A;  2CGQ A;  2EHS A;  5CZD B;  1X3O A;  2KGD A;  2LIU A;  2JU1 A;  2KOS A;  2GDY A;  2KOP A;  2LTE A;  5KP8 B;  1T8K A;  1L0H A;  2AFE A;  4PWV B;  4R0M A;  2GDW A;  1DNY A;  4NEO A;  2PNG A;  1HQB A;  2MR8 A;  1F80 D;  2LIW A;  2K93 A;  2L9F A;  2ROQ A;  4DG9 A;  5KP6 B;  2FAD A;  4H2Y C;  2FVF A;  2KGA A;  2CQ8 A;  2KGE A;  2EHT A;  2KG6 A;  2LOL A;  2XZ0 D;  4IZ6 A;  2N5H A;  2N5I A;  2KWL A;  2K2Q A;  4H2X C;  1OR5 A;  2AVA A;  2K0X A;  1AF8 A;  2FQ2 A;  2KR5 A;  1VKU A;  4BPG A;  2K94 A;  2JGP A;  4BPF A;  2LL8 A;  3LMO A;  2X2B A;  5HV8 A;  3EJB A;  5EJD A;  2KOR A;  2FVE A;  4H2W C;  2DNW A;  2K0Y A;  2KOO A;  4MRT C;  2KG9 A;  4CA3 A;  2MD9 A;  5HVC A;  2N98 A; 
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